FF:11860-125A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004938 | |DRA_sample_Accession=CAGE@SAMD00004938 | ||
|accession_numbers=CAGE;DRX008138;DRR009010;DRZ000435;DRZ001820 | |accession_numbers=CAGE;DRX008138;DRR009010;DRZ000435;DRZ001820;DRZ011785;DRZ013170 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.90!7988.93!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.96!914.57!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.76!579.12!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.73!1058.42!EGR2;;chr10:35484053..35484076,+!p1@CREM!2.68!1133.80!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.55!356.16!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.45!282.23!TFEC;;chr20:39317868..39317884,-!p1@MAFB!2.26!1987.09!MAFB;;chr11:64764435..64764449,-!p1@BATF2!2.23!230.15!BATF2;;chr2:70142232..70142251,+!p1@MXD1!2.22!867.10!MXD1;;chr6:106534192..106534224,+!p1@PRDM1!2.19!416.00!PRDM1;;chr6:36355431..36355466,-!p1@ETV7!2.12!130.32!ETV7;;chr7:128577972..128578047,+!p1@IRF5!2.11!195.92!IRF5;;chr11:47399947..47399961,-!p3@SPI1!2.11!127.45!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.09!121.41!SPI1;;chr11:65430554..65430579,-!p3@RELA!2.07!286.83!RELA;;chr5:131826457..131826514,-!p1@IRF1!2.06!4125.22!IRF1;;chr2:68592394..68592405,+!p2@PLEK!2.03!105.30!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.96!89.76!TBX21;;chr11:615942..615957,-!p1@IRF7!1.95!781.95!IRF7;;chr1:221052776..221052799,+!p1@HLX!1.94!150.18!HLX;;chr1:25256756..25256774,-!p1@RUNX3!1.93!153.34!RUNX3;;chr10:35484090..35484104,+!p6@CREM!1.93!84.87!CREM;;chr11:65430535..65430549,-!p4@RELA!1.91!91.77!RELA;;chr21:36260295..36260310,-!p3@RUNX1!1.90!123.42!RUNX1;;chr11:47399996..47400014,-!p4@SPI1!1.87!73.94!SPI1;;chr6:106534230..106534254,+!p2@PRDM1!1.83!161.40!PRDM1;;chr16:31885093..31885165,+!p1@ZNF267!1.81!904.79!ZNF267;;chr1:158985493..158985535,+!p4@IFI16!1.81!94.08!IFI16;;chr12:72056800..72056834,+!p1@THAP2!1.80!83.14!THAP2;;chr19:50432132..50432217,+!p2@ATF5!1.80!73.36!ATF5;;chr14:35872453..35872485,-!p2@NFKBIA!1.79!144.42!NFKBIA;;chr2:231084639..231084654,-!p2@SP110!1.79!97.53!SP110;;chr14:75988831..75988847,+!p2@BATF!1.77!57.54!BATF;;chr10:31288398..31288455,-!p2@ZNF438!1.75!63.58!ZNF438;;chr12:72056749..72056767,+!p6@THAP2!1.75!61.57!THAP2;;chr19:36391434..36391450,-!p1@NFKBID!1.74!102.13!NFKBID;;chr22:38597987..38598021,+!p2@MAFF!1.73!307.83!MAFF;;chr11:47400032..47400043,-!p5@SPI1!1.73!53.22!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.72!1320.22!ATF3;;chr10:64018918..64018936,+!p2@ZNF365!1.72!51.78!ZNF365;;chr14:35873947..35873965,-!p1@NFKBIA!1.69!2856.50!NFKBIA;;chr2:145277640..145277771,-!p1@ZEB2!1.69!607.32!ZEB2;;chr19:45971246..45971265,+!p1@FOSB!1.68!831.14!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.68!153.34!BACH1;;chr11:615570..615721,-!p2@IRF7!1.67!88.32!IRF7;;chr2:97202480..97202499,+!p1@ARID5A!1.66!425.50!ARID5A;;chr2:145275162..145275202,-!p2@ZEB2!1.66!251.73!ZEB2;;chr1:221052733..221052749,+!p2@HLX!1.66!58.11!HLX;;chr10:35484804..35484902,+!p2@CREM!1.63!151.90!CREM;;chr8:22550982..22550999,-!p1@EGR3!1.63!113.06!EGR3;;chr10:51572408..51572454,+!p3@NCOA4!1.61!221.52!NCOA4;;chr3:12329397..12329433,+!p2@PPARG!1.61!88.90!PPARG;;chr2:231090471..231090504,+!p2@SP140!1.61!39.70!SP140;;chr14:75988771..75988826,+!p1@BATF!1.59!50.06!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.58!37.40!ZNF385A;;chr1:158979872..158979898,+!p3@IFI16!1.56!105.58!IFI16;;chr4:185395590..185395627,-!p3@IRF2!1.56!43.15!IRF2;;chr6:126240380..126240430,+!p2@NCOA7!1.55!87.17!NCOA7;;chr21:30671235..30671253,+!p1@BACH1!1.54!411.40!BACH1;;chr2:157189180..157189290,-!p1@NR4A2!1.54!168.59!NR4A2;;chr12:72056773..72056796,+!p3@THAP2!1.54!43.44!THAP2;;chr10:31288370..31288393,-!p3@ZNF438!1.54!33.37!ZNF438;;chr21:34442439..34442455,+!p1@OLIG1!1.53!32.80!OLIG1;;chr19:33793430..33793447,-!p1@CEBPA!1.49!121.98!CEBPA;;chr10:51572339..51572376,+!p4@NCOA4!1.49!66.46!NCOA4;;chr4:185395633..185395651,-!p2@IRF2!1.48!46.32!IRF2;;chr2:70167296..70167306,+!p3@MXD1!1.48!43.73!MXD1;;chr3:39195037..39195069,-!p2@CSRNP1!1.47!170.31!CSRNP1;;chr4:103422499..103422632,+!p1@NFKB1!1.46!556.40!NFKB1;;chr16:79634624..79634642,-!p1@MAF!1.46!105.30!MAF;;chr21:36421535..36421610,-!p2@RUNX1!1.46!96.66!RUNX1;;chr14:35872962..35873025,-!p3@NFKBIA!1.46!68.47!NFKBIA;;chrX:153305787..153305807,-!p3@MECP2!1.46!27.91!MECP2;;chrX:129244454..129244488,-!p1@ELF4!1.45!189.01!ELF4;;chr21:36260343..36260402,-!p6@RUNX1!1.45!43.44!RUNX1;;chr6:106535598..106535637,+!p7@PRDM1!1.45!27.04!PRDM1;;chr2:145277882..145277967,-!p3@ZEB2!1.44!44.88!ZEB2;;chr11:47399920..47399931,-!p7@SPI1!1.44!26.76!SPI1;;chr10:104155480..104155534,+!p2@NFKB2!1.43!161.68!NFKB2;;chr6:15246200..15246214,+!p2@JARID2!1.43!69.33!JARID2;;chr12:48298765..48298783,-!p2@VDR!1.43!52.65!VDR;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.07!PLAGL1;;chr2:191885737..191885750,-!p4@STAT1!1.43!25.89!STAT1;;chr7:50344289..50344323,+!p1@IKZF1!1.42!25.03!IKZF1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.41!1216.08!NFKBIZ;;chr11:47400045..47400060,-!p6@SPI1!1.41!24.74!SPI1;;chr3:187455680..187455700,-!p4@BCL6!1.41!24.45!BCL6;;chr13:41593425..41593480,-!p1@ELF1!1.40!149.89!ELF1;;chr9:102584159..102584174,+!p2@NR4A3!1.40!43.15!NR4A3;;chr19:45251395..45251432,+!p8@BCL3!1.40!24.17!BCL3;;chr12:11802753..11802834,+!p2@ETV6!1.39!111.34!ETV6;;chr3:39195139..39195150,-!p3@CSRNP1!1.39!29.92!CSRNP1;;chr17:38497662..38497713,+!p4@RARA!1.39!27.33!RARA;;chr10:64575812..64575824,-!p4@EGR2!1.39!23.59!EGR2;;chr6:391743..391759,+!p1@IRF4!1.39!23.59!IRF4;;chr20:48807351..48807384,+!p1@CEBPB!1.38!2245.73!CEBPB;;chr9:102584262..102584276,+!p1@NR4A3!1.38!50.06!NR4A3;;chr3:187463179..187463201,-!p2@BCL6!1.37!90.05!BCL6;;chr19:45252008..45252024,+!p2@BCL3!1.37!71.64!BCL3;;chr1:38325227..38325246,-!p2@MTF1!1.37!30.78!MTF1;;chr9:110252035..110252057,-!p1@KLF4!1.36!340.92!KLF4;;chr12:56415246..56415286,+!p2@IKZF4!1.36!21.86!IKZF4;;chr6:44233252..44233296,-!p1@NFKBIE!1.35!205.70!NFKBIE;;chr8:116681123..116681143,-!p4@TRPS1!1.35!40.56!TRPS1;;chr22:38598086..38598105,+!p1@MAFF!1.34!216.63!MAFF;;chr2:61108695..61108753,+!p1@REL!1.34!140.39!REL;;chr3:12330560..12330579,+!p1@PPARG!1.34!24.17!PPARG;;chr21:40177845..40177863,+!p1@ETS2!1.33!1157.10!ETS2;;chr10:104154246..104154347,+!p3@NFKB2!1.33!120.83!NFKB2;;chr22:38598057..38598071,+!p3@MAFF!1.33!46.89!MAFF;;chr6:126240442..126240459,+!p4@NCOA7!1.33!25.89!NCOA7;;chr9:110250697..110250738,-!p2@KLF4!1.33!23.88!KLF4;;chr21:36260325..36260341,-!p14@RUNX1!1.33!20.14!RUNX1;;chr4:106068026..106068084,+!p1@TET2!1.32!174.92!TET2;;chr14:35872494..35872511,-!p5@NFKBIA!1.32!26.18!NFKBIA;;chr21:30672433..30672464,+!p6@BACH1!1.32!19.85!BACH1;;chr18:3449720..3449749,+!p2@TGIF1!1.31!40.85!TGIF1;;chr2:145275228..145275241,-!p11@ZEB2!1.31!23.30!ZEB2;;chr3:187455634..187455651,-!p7@BCL6!1.31!19.28!BCL6;;chr2:70314240..70314256,+!p4@PCBP1!1.30!38.26!PCBP1;;chr5:142782823..142782854,-!p3@NR3C1!1.30!26.76!NR3C1;;chr1:221052840..221052875,+!p4@HLX!1.30!22.44!HLX;;chr21:30672734..30672748,+!p11@BACH1!1.30!18.99!BACH1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.29!222.67!ZC3H12A;;chr9:102584128..102584144,+!p3@NR4A3!1.29!35.10!NR4A3;;chr6:126240463..126240489,+!p6@NCOA7!1.29!20.71!NCOA7;;chr2:231090433..231090469,+!p1@SP140!1.29!18.41!SP140;;chrX:129244430..129244442,-!p5@ELF4!1.29!18.41!ELF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!17.84!ZBED1;;chr14:35872926..35872951,-!p4@NFKBIA!1.26!24.45!NFKBIA;;chr2:192015701..192015743,-!p1@STAT4!1.26!23.59!STAT4;;chr7:115670792..115670797,-!p2@TFEC!1.26!17.26!TFEC;;chr19:45250948..45250998,+!p3@BCL3!1.25!41.72!BCL3;;chr21:36260980..36261011,-!p1@RUNX1!1.24!460.02!RUNX1;;chr2:231084659..231084721,-!p1@SP110!1.23!360.48!SP110;;chr12:52445218..52445237,+!p1@NR4A1!1.23!195.92!NR4A1;;chr10:64576035..64576046,-!p2@EGR2!1.23!15.82!EGR2;;chr1:25256439..25256476,-!p3@RUNX3!1.23!15.82!RUNX3;;chr18:3449586..3449617,+!p8@TGIF1!1.22!24.74!TGIF1;;chr4:103423079..103423112,+!p4@NFKB1!1.22!15.54!NFKB1;;chr9:129567282..129567353,+!p1@ZBTB43!1.21!197.93!ZBTB43;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.99!TGIF1;;chr1:221052994..221053008,+!p6@HLX!1.21!17.84!HLX;;chr10:104155455..104155479,+!p1@NFKB2!1.20!212.03!NFKB2;;chr3:39195075..39195088,-!p1@CSRNP1!1.20!91.49!CSRNP1;;chr2:231280954..231280965,+!p2@SP100!1.20!27.04!SP100;;chr3:187454281..187454300,-!p8@BCL6!1.20!14.67!BCL6;;chr3:187455486..187455504,-!p6@BCL6!1.19!14.38!BCL6;;chr7:17338266..17338282,+!p1@AHR!1.18!150.18!AHR;;chr20:48599506..48599526,+!p1@SNAI1!1.18!89.76!SNAI1;;chr16:3285119..3285133,-!p2@ZNF200!1.18!28.19!ZNF200;;chr2:28618532..28618610,+!p4@FOSL2!1.18!23.88!FOSL2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.18!20.14!NFKBIZ;;chr4:185395191..185395226,-!p4@IRF2!1.18!19.56!IRF2;;chr10:3827371..3827386,-!p2@KLF6!1.17!114.21!KLF6;;chr16:79634595..79634620,-!p2@MAF!1.16!24.45!MAF;;chr16:89787973..89788001,+!p3@ZNF276!1.15!25.03!ZNF276;;chr4:83822199..83822239,+!p2@THAP9!1.15!15.82!THAP9;;chr11:65430617..65430624,-!p8@RELA!1.15!13.23!RELA;;chr19:12902289..12902307,+!p1@JUNB!1.14!2876.64!JUNB;;chr7:28725740..28725778,+!p1@CREB5!1.14!114.79!CREB5;;chr8:116681409..116681431,-!p2@TRPS1!1.14!35.10!TRPS1;;chr8:116681150..116681164,-!p5@TRPS1!1.14!25.32!TRPS1;;chr1:221053049..221053075,+!p3@HLX!1.14!22.15!HLX;;chr19:45254529..45254561,+!p10@BCL3!1.14!17.26!BCL3;;chr2:145271342..145271377,-!p5@ZEB2!1.14!12.95!ZEB2;;chr11:65430038..65430053,-!p12@RELA!1.14!12.95!RELA;;chr17:79885537..79885554,-!p2@MAFG!1.13!23.88!MAFG;;chr14:35872414..35872425,-!p7@NFKBIA!1.13!14.10!NFKBIA;;chr14:35872542..35872553,-!p10@NFKBIA!1.13!12.37!NFKBIA;;chr1:221054922..221054933,+!p16@HLX!1.13!12.37!HLX;;chr12:48298785..48298828,-!p1@VDR!1.12!65.31!VDR;;chr11:65429891..65429915,-!p7@RELA!1.12!12.08!RELA;;chr7:150946376..150946389,-!p6@SMARCD3!1.12!12.08!SMARCD3;;chr1:158979792..158979814,+!p2@IFI16!1.11!113.06!IFI16;;chr2:70142189..70142223,+!p2@MXD1!1.11!84.01!MXD1;;chr14:74226747..74226779,-!p3@C14orf43!1.11!65.59!C14orf43;;chr10:35416142..35416169,+!p3@CREM!1.11!31.65!CREM;;chr18:3448455..3448480,+!p5@TGIF1!1.11!22.15!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!1.11!18.12!TGIF1;;chr15:85291372..85291405,+!p3@ZNF592!1.11!16.40!ZNF592;;chr11:65430586..65430593,-!p5@RELA!1.11!13.52!RELA;;chr3:187455529..187455544,-!p5@BCL6!1.11!11.80!BCL6;;chr1:158979922..158979933,+!p13@IFI16!1.11!11.80!IFI1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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.90!7988.93!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.96!914.57!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.76!579.12!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.73!1058.42!EGR2;;chr10:35484053..35484076,+!p1@CREM!2.68!1133.80!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.55!356.16!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.45!282.23!TFEC;;chr20:39317868..39317884,-!p1@MAFB!2.26!1987.09!MAFB;;chr11:64764435..64764449,-!p1@BATF2!2.23!230.15!BATF2;;chr2:70142232..70142251,+!p1@MXD1!2.22!867.10!MXD1;;chr6:106534192..106534224,+!p1@PRDM1!2.19!416.00!PRDM1;;chr6:36355431..36355466,-!p1@ETV7!2.12!130.32!ETV7;;chr7:128577972..128578047,+!p1@IRF5!2.11!195.92!IRF5;;chr11:47399947..47399961,-!p3@SPI1!2.11!127.45!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.09!121.41!SPI1;;chr11:65430554..65430579,-!p3@RELA!2.07!286.83!RELA;;chr5:131826457..131826514,-!p1@IRF1!2.06!4125.22!IRF1;;chr2:68592394..68592405,+!p2@PLEK!2.03!105.30!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.96!89.76!TBX21;;chr11:615942..615957,-!p1@IRF7!1.95!781.95!IRF7;;chr1:221052776..221052799,+!p1@HLX!1.94!150.18!HLX;;chr1:25256756..25256774,-!p1@RUNX3!1.93!153.34!RUNX3;;chr10:35484090..35484104,+!p6@CREM!1.93!84.87!CREM;;chr11:65430535..65430549,-!p4@RELA!1.91!91.77!RELA;;chr21:36260295..36260310,-!p3@RUNX1!1.90!123.42!RUNX1;;chr11:47399996..47400014,-!p4@SPI1!1.87!73.94!SPI1;;chr6:106534230..106534254,+!p2@PRDM1!1.83!161.40!PRDM1;;chr16:31885093..31885165,+!p1@ZNF267!1.81!904.79!ZNF267;;chr1:158985493..158985535,+!p4@IFI16!1.81!94.08!IFI16;;chr12:72056800..72056834,+!p1@THAP2!1.80!83.14!THAP2;;chr19:50432132..50432217,+!p2@ATF5!1.80!73.36!ATF5;;chr14:35872453..35872485,-!p2@NFKBIA!1.79!144.42!NFKBIA;;chr2:231084639..231084654,-!p2@SP110!1.79!97.53!SP110;;chr14:75988831..75988847,+!p2@BATF!1.77!57.54!BATF;;chr10:31288398..31288455,-!p2@ZNF438!1.75!63.58!ZNF438;;chr12:72056749..72056767,+!p6@THAP2!1.75!61.57!THAP2;;chr19:36391434..36391450,-!p1@NFKBID!1.74!102.13!NFKBID;;chr22:38597987..38598021,+!p2@MAFF!1.73!307.83!MAFF;;chr11:47400032..47400043,-!p5@SPI1!1.73!53.22!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.72!1320.22!ATF3;;chr10:64018918..64018936,+!p2@ZNF365!1.72!51.78!ZNF365;;chr14:35873947..35873965,-!p1@NFKBIA!1.69!2856.50!NFKBIA;;chr2:145277640..145277771,-!p1@ZEB2!1.69!607.32!ZEB2;;chr19:45971246..45971265,+!p1@FOSB!1.68!831.14!FOSB;;chr21:30671690..30671762,+!p2@BACH1!1.68!153.34!BACH1;;chr11:615570..615721,-!p2@IRF7!1.67!88.32!IRF7;;chr2:97202480..97202499,+!p1@ARID5A!1.66!425.50!ARID5A;;chr2:145275162..145275202,-!p2@ZEB2!1.66!251.73!ZEB2;;chr1:221052733..221052749,+!p2@HLX!1.66!58.11!HLX;;chr10:35484804..35484902,+!p2@CREM!1.63!151.90!CREM;;chr8:22550982..22550999,-!p1@EGR3!1.63!113.06!EGR3;;chr10:51572408..51572454,+!p3@NCOA4!1.61!221.52!NCOA4;;chr3:12329397..12329433,+!p2@PPARG!1.61!88.90!PPARG;;chr2:231090471..231090504,+!p2@SP140!1.61!39.70!SP140;;chr14:75988771..75988826,+!p1@BATF!1.59!50.06!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.58!37.40!ZNF385A;;chr1:158979872..158979898,+!p3@IFI16!1.56!105.58!IFI16;;chr4:185395590..185395627,-!p3@IRF2!1.56!43.15!IRF2;;chr6:126240380..126240430,+!p2@NCOA7!1.55!87.17!NCOA7;;chr21:30671235..30671253,+!p1@BACH1!1.54!411.40!BACH1;;chr2:157189180..157189290,-!p1@NR4A2!1.54!168.59!NR4A2;;chr12:72056773..72056796,+!p3@THAP2!1.54!43.44!THAP2;;chr10:31288370..31288393,-!p3@ZNF438!1.54!33.37!ZNF438;;chr21:34442439..34442455,+!p1@OLIG1!1.53!32.80!OLIG1;;chr19:33793430..33793447,-!p1@CEBPA!1.49!121.98!CEBPA;;chr10:51572339..51572376,+!p4@NCOA4!1.49!66.46!NCOA4;;chr4:185395633..185395651,-!p2@IRF2!1.48!46.32!IRF2;;chr2:70167296..70167306,+!p3@MXD1!1.48!43.73!MXD1;;chr3:39195037..39195069,-!p2@CSRNP1!1.47!170.31!CSRNP1;;chr4:103422499..103422632,+!p1@NFKB1!1.46!556.40!NFKB1;;chr16:79634624..79634642,-!p1@MAF!1.46!105.30!MAF;;chr21:36421535..36421610,-!p2@RUNX1!1.46!96.66!RUNX1;;chr14:35872962..35873025,-!p3@NFKBIA!1.46!68.47!NFKBIA;;chrX:153305787..153305807,-!p3@MECP2!1.46!27.91!MECP2;;chrX:129244454..129244488,-!p1@ELF4!1.45!189.01!ELF4;;chr21:36260343..36260402,-!p6@RUNX1!1.45!43.44!RUNX1;;chr6:106535598..106535637,+!p7@PRDM1!1.45!27.04!PRDM1;;chr2:145277882..145277967,-!p3@ZEB2!1.44!44.88!ZEB2;;chr11:47399920..47399931,-!p7@SPI1!1.44!26.76!SPI1;;chr10:104155480..104155534,+!p2@NFKB2!1.43!161.68!NFKB2;;chr6:15246200..15246214,+!p2@JARID2!1.43!69.33!JARID2;;chr12:48298765..48298783,-!p2@VDR!1.43!52.65!VDR;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.07!PLAGL1;;chr2:191885737..191885750,-!p4@STAT1!1.43!25.89!STAT1;;chr7:50344289..50344323,+!p1@IKZF1!1.42!25.03!IKZF1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.41!1216.08!NFKBIZ;;chr11:47400045..47400060,-!p6@SPI1!1.41!24.74!SPI1;;chr3:187455680..187455700,-!p4@BCL6!1.41!24.45!BCL6;;chr13:41593425..41593480,-!p1@ELF1!1.40!149.89!ELF1;;chr9:102584159..102584174,+!p2@NR4A3!1.40!43.15!NR4A3;;chr19:45251395..45251432,+!p8@BCL3!1.40!24.17!BCL3;;chr12:11802753..11802834,+!p2@ETV6!1.39!111.34!ETV6;;chr3:39195139..39195150,-!p3@CSRNP1!1.39!29.92!CSRNP1;;chr17:38497662..38497713,+!p4@RARA!1.39!27.33!RARA;;chr10:64575812..64575824,-!p4@EGR2!1.39!23.59!EGR2;;chr6:391743..391759,+!p1@IRF4!1.39!23.59!IRF4;;chr20:48807351..48807384,+!p1@CEBPB!1.38!2245.73!CEBPB;;chr9:102584262..102584276,+!p1@NR4A3!1.38!50.06!NR4A3;;chr3:187463179..187463201,-!p2@BCL6!1.37!90.05!BCL6;;chr19:45252008..45252024,+!p2@BCL3!1.37!71.64!BCL3;;chr1:38325227..38325246,-!p2@MTF1!1.37!30.78!MTF1;;chr9:110252035..110252057,-!p1@KLF4!1.36!340.92!KLF4;;chr12:56415246..56415286,+!p2@IKZF4!1.36!21.86!IKZF4;;chr6:44233252..44233296,-!p1@NFKBIE!1.35!205.70!NFKBIE;;chr8:116681123..116681143,-!p4@TRPS1!1.35!40.56!TRPS1;;chr22:38598086..38598105,+!p1@MAFF!1.34!216.63!MAFF;;chr2:61108695..61108753,+!p1@REL!1.34!140.39!REL;;chr3:12330560..12330579,+!p1@PPARG!1.34!24.17!PPARG;;chr21:40177845..40177863,+!p1@ETS2!1.33!1157.10!ETS2;;chr10:104154246..104154347,+!p3@NFKB2!1.33!120.83!NFKB2;;chr22:38598057..38598071,+!p3@MAFF!1.33!46.89!MAFF;;chr6:126240442..126240459,+!p4@NCOA7!1.33!25.89!NCOA7;;chr9:110250697..110250738,-!p2@KLF4!1.33!23.88!KLF4;;chr21:36260325..36260341,-!p14@RUNX1!1.33!20.14!RUNX1;;chr4:106068026..106068084,+!p1@TET2!1.32!174.92!TET2;;chr14:35872494..35872511,-!p5@NFKBIA!1.32!26.18!NFKBIA;;chr21:30672433..30672464,+!p6@BACH1!1.32!19.85!BACH1;;chr18:3449720..3449749,+!p2@TGIF1!1.31!40.85!TGIF1;;chr2:145275228..145275241,-!p11@ZEB2!1.31!23.30!ZEB2;;chr3:187455634..187455651,-!p7@BCL6!1.31!19.28!BCL6;;chr2:70314240..70314256,+!p4@PCBP1!1.30!38.26!PCBP1;;chr5:142782823..142782854,-!p3@NR3C1!1.30!26.76!NR3C1;;chr1:221052840..221052875,+!p4@HLX!1.30!22.44!HLX;;chr21:30672734..30672748,+!p11@BACH1!1.30!18.99!BACH1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.29!222.67!ZC3H12A;;chr9:102584128..102584144,+!p3@NR4A3!1.29!35.10!NR4A3;;chr6:126240463..126240489,+!p6@NCOA7!1.29!20.71!NCOA7;;chr2:231090433..231090469,+!p1@SP140!1.29!18.41!SP140;;chrX:129244430..129244442,-!p5@ELF4!1.29!18.41!ELF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!17.84!ZBED1;;chr14:35872926..35872951,-!p4@NFKBIA!1.26!24.45!NFKBIA;;chr2:192015701..192015743,-!p1@STAT4!1.26!23.59!STAT4;;chr7:115670792..115670797,-!p2@TFEC!1.26!17.26!TFEC;;chr19:45250948..45250998,+!p3@BCL3!1.25!41.72!BCL3;;chr21:36260980..36261011,-!p1@RUNX1!1.24!460.02!RUNX1;;chr2:231084659..231084721,-!p1@SP110!1.23!360.48!SP110;;chr12:52445218..52445237,+!p1@NR4A1!1.23!195.92!NR4A1;;chr10:64576035..64576046,-!p2@EGR2!1.23!15.82!EGR2;;chr1:25256439..25256476,-!p3@RUNX3!1.23!15.82!RUNX3;;chr18:3449586..3449617,+!p8@TGIF1!1.22!24.74!TGIF1;;chr4:103423079..103423112,+!p4@NFKB1!1.22!15.54!NFKB1;;chr9:129567282..129567353,+!p1@ZBTB43!1.21!197.93!ZBTB43;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.99!TGIF1;;chr1:221052994..221053008,+!p6@HLX!1.21!17.84!HLX;;chr10:104155455..104155479,+!p1@NFKB2!1.20!212.03!NFKB2;;chr3:39195075..39195088,-!p1@CSRNP1!1.20!91.49!CSRNP1;;chr2:231280954..231280965,+!p2@SP100!1.20!27.04!SP100;;chr3:187454281..187454300,-!p8@BCL6!1.20!14.67!BCL6;;chr3:187455486..187455504,-!p6@BCL6!1.19!14.38!BCL6;;chr7:17338266..17338282,+!p1@AHR!1.18!150.18!AHR;;chr20:48599506..48599526,+!p1@SNAI1!1.18!89.76!SNAI1;;chr16:3285119..3285133,-!p2@ZNF200!1.18!28.19!ZNF200;;chr2:28618532..28618610,+!p4@FOSL2!1.18!23.88!FOSL2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.18!20.14!NFKBIZ;;chr4:185395191..185395226,-!p4@IRF2!1.18!19.56!IRF2;;chr10:3827371..3827386,-!p2@KLF6!1.17!114.21!KLF6;;chr16:79634595..79634620,-!p2@MAF!1.16!24.45!MAF;;chr16:89787973..89788001,+!p3@ZNF276!1.15!25.03!ZNF276;;chr4:83822199..83822239,+!p2@THAP9!1.15!15.82!THAP9;;chr11:65430617..65430624,-!p8@RELA!1.15!13.23!RELA;;chr19:12902289..12902307,+!p1@JUNB!1.14!2876.64!JUNB;;chr7:28725740..28725778,+!p1@CREB5!1.14!114.79!CREB5;;chr8:116681409..116681431,-!p2@TRPS1!1.14!35.10!TRPS1;;chr8:116681150..116681164,-!p5@TRPS1!1.14!25.32!TRPS1;;chr1:221053049..221053075,+!p3@HLX!1.14!22.15!HLX;;chr19:45254529..45254561,+!p10@BCL3!1.14!17.26!BCL3;;chr2:145271342..145271377,-!p5@ZEB2!1.14!12.95!ZEB2;;chr11:65430038..65430053,-!p12@RELA!1.14!12.95!RELA;;chr17:79885537..79885554,-!p2@MAFG!1.13!23.88!MAFG;;chr14:35872414..35872425,-!p7@NFKBIA!1.13!14.10!NFKBIA;;chr14:35872542..35872553,-!p10@NFKBIA!1.13!12.37!NFKBIA;;chr1:221054922..221054933,+!p16@HLX!1.13!12.37!HLX;;chr12:48298785..48298828,-!p1@VDR!1.12!65.31!VDR;;chr11:65429891..65429915,-!p7@RELA!1.12!12.08!RELA;;chr7:150946376..150946389,-!p6@SMARCD3!1.12!12.08!SMARCD3;;chr1:158979792..158979814,+!p2@IFI16!1.11!113.06!IFI16;;chr2:70142189..70142223,+!p2@MXD1!1.11!84.01!MXD1;;chr14:74226747..74226779,-!p3@C14orf43!1.11!65.59!C14orf43;;chr10:35416142..35416169,+!p3@CREM!1.11!31.65!CREM;;chr18:3448455..3448480,+!p5@TGIF1!1.11!22.15!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!1.11!18.12!TGIF1;;chr15:85291372..85291405,+!p3@ZNF592!1.11!16.40!ZNF592;;chr11:65430586..65430593,-!p5@RELA!1.11!13.52!RELA;;chr3:187455529..187455544,-!p5@BCL6!1.11!11.80!BCL6;;chr1:158979922..158979933,+!p13@IFI16!1.11!11.80!IFI1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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11860-125A6 | |fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11860-125A6 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor1.CNhs13465.11860-125A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor1.CNhs13465.11860-125A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor1.CNhs13465.11860-125A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor1.CNhs13465.11860-125A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor1.CNhs13465.11860-125A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11860-125A6 | |id=FF:11860-125A6 | ||
|is_a=EFO:0002091;;FF:0011103 | |is_a=EFO:0002091;;FF:0011103 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13465 | |library_id=CNhs13465 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs13465 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11860 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11860 | |||
|name=CD14+ monocytes - treated with BCG, donor1 | |name=CD14+ monocytes - treated with BCG, donor1 | ||
|namespace= | |namespace= | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13465,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13465,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 90: | Line 101: | ||
|top_motifs=STAT5{A,B}:6.04730313201;STAT2,4,6:5.91780238851;FOSL2:4.7890680776;IRF7:4.75527392776;NFE2:4.74366025827;IRF1,2:4.72039007102;NFE2L2:4.59235091947;CEBPA,B_DDIT3:4.52556143357;FOS_FOS{B,L1}_JUN{B,D}:4.43574560952;BACH2:4.3581695063;HLF:4.32448295046;STAT1,3:4.19795499726;PAX2:3.58341693728;SPIB:3.43420274536;NANOG{mouse}:3.38750142984;NFIL3:3.05380925925;SPI1:3.03730311516;NR1H4:3.03108700897;NFKB1_REL_RELA:3.01073485757;SREBF1,2:2.95726593749;FOXP3:2.70455308098;ETS1,2:2.70358324222;ATF6:2.57804600478;ATF4:2.49474979493;ATF5_CREB3:2.49392021711;EP300:2.4615099249;DMAP1_NCOR{1,2}_SMARC:2.38201462932;FOXN1:2.20233157028;HSF1,2:2.15137127393;NFATC1..3:2.02883153083;NFE2L1:2.00854970535;CDX1,2,4:1.91412863075;RUNX1..3:1.87297209835;CREB1:1.82150118596;ALX4:1.75597098733;JUN:1.67005361974;PAX8:1.57818627505;HMGA1,2:1.51033363206;HIF1A:1.44771196577;XBP1:1.3754440942;RXRA_VDR{dimer}:1.37472831069;ELF1,2,4:1.31376153;PDX1:1.23209510797;ATF2:1.21739433649;TGIF1:1.20439126681;PITX1..3:1.15221139705;MAFB:1.09328793378;NR6A1:1.01723120209;ZBTB16:0.954377572836;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.867743247176;PPARG:0.76909738834;SRF:0.693132564624;IKZF1:0.644686364494;HOX{A5,B5}:0.637853214822;PAX3,7:0.60900319048;HMX1:0.554221847514;PRDM1:0.522830173785;PAX4:0.520669075985;TFCP2:0.403218036521;BPTF:0.348930428571;HBP1_HMGB_SSRP1_UBTF:0.224381386889;IKZF2:0.210574182803;GLI1..3:0.189472979779;FOXD3:0.183843905314;FOXO1,3,4:0.181337087507;EN1,2:0.128147966547;TLX2:0.116594917415;GATA4:0.0768607304719;ESRRA:0.0610812296695;SPZ1:-0.0688058073145;PAX1,9:-0.103063845346;TBP:-0.120481523577;FOXL1:-0.138282487934;DBP:-0.184602613228;MEF2{A,B,C,D}:-0.222697398661;AHR_ARNT_ARNT2:-0.246925844108;SMAD1..7,9:-0.258604784941;EGR1..3:-0.290653316842;MYB:-0.30860346431;ALX1:-0.319159570038;FOXM1:-0.324962951369;POU2F1..3:-0.395731631997;RXR{A,B,G}:-0.477730796166;NKX6-1,2:-0.496397818806;FOX{D1,D2}:-0.51369556726;NKX3-2:-0.519029591195;ESR1:-0.544964005404;VSX1,2:-0.553621765388;RBPJ:-0.564937529778;NKX3-1:-0.603825594256;OCT4_SOX2{dimer}:-0.637734464915;FOXP1:-0.645381325886;NR3C1:-0.680669789957;RFX2..5_RFXANK_RFXAP:-0.704248441492;NANOG:-0.733271871826;MZF1:-0.811506871536;TFAP4:-0.813454225681;HOX{A6,A7,B6,B7}:-0.873706848747;NKX2-2,8:-0.916295702463;POU6F1:-0.93644905736;ZNF238:-0.978398975586;REST:-0.983508015352;HOXA9_MEIS1:-1.01116114406;TAL1_TCF{3,4,12}:-1.03419613455;POU5F1:-1.10934735218;PAX6:-1.14797946713;HNF4A_NR2F1,2:-1.15039343831;HNF1A:-1.15722140928;SOX2:-1.16688034796;PRRX1,2:-1.2214259941;MYFfamily:-1.2351169369;HES1:-1.25394902063;GZF1:-1.33002643412;NFIX:-1.34528048653;FOX{F1,F2,J1}:-1.38274191411;NHLH1,2:-1.39128311316;RORA:-1.42917557536;T:-1.44269825571;MED-1{core}:-1.46097411214;ZBTB6:-1.52477168973;SOX5:-1.55483823707;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56416511331;RREB1:-1.58713928405;ADNP_IRX_SIX_ZHX:-1.58980339014;CRX:-1.63062865673;PATZ1:-1.63111092571;ZNF384:-1.64845411441;NKX2-1,4:-1.65770123309;MTE{core}:-1.6903735573;E2F1..5:-1.69665764039;GATA6:-1.70266460914;TOPORS:-1.72301921003;TEAD1:-1.74359453119;CUX2:-1.76449671508;POU3F1..4:-1.78548498533;MTF1:-1.7954340696;GTF2A1,2:-1.81200286605;TLX1..3_NFIC{dimer}:-1.82212951586;TFAP2B:-1.8304567053;ZNF148:-1.8372659229;ZFP161:-1.8565904012;XCPE1{core}:-1.87567243322;ZEB1:-1.88135803574;GTF2I:-1.8874735255;SOX{8,9,10}:-1.90227426097;UFEwm:-1.91346376984;RFX1:-1.91465618401;BREu{core}:-1.94852941798;TP53:-1.96960638762;SP1:-1.97325075482;ZIC1..3:-1.97855667074;TFDP1:-2.01188026806;MAZ:-2.01671023313;NKX2-3_NKX2-5:-2.05062592464;MYOD1:-2.05825906025;FOXA2:-2.08235367036;TFAP2{A,C}:-2.1281339726;SNAI1..3:-2.1301519423;KLF4:-2.19386292454;GFI1B:-2.19395113573;CDC5L:-2.21063248717;FOXQ1:-2.21803718035;ARID5B:-2.23713908788;EVI1:-2.27450927618;GCM1,2:-2.28189452187;HIC1:-2.30553060668;TBX4,5:-2.31829085121;ELK1,4_GABP{A,B1}:-2.32469268197;ONECUT1,2:-2.35303649402;TEF:-2.37073229109;MYBL2:-2.41411476429;HOX{A4,D4}:-2.45563253332;AIRE:-2.50853687275;LMO2:-2.51706840092;ZNF423:-2.52066877811;bHLH_family:-2.54398455906;HAND1,2:-2.60319626017;EBF1:-2.6035788127;POU1F1:-2.69395753844;NFY{A,B,C}:-2.78105683633;PAX5:-2.83237109806;GFI1:-2.92184672088;FOX{I1,J2}:-2.95491436959;PBX1:-2.95904062292;NR5A1,2:-2.99039643821;SOX17:-3.05737919127;AR:-3.17560697141;NRF1:-3.30877459312;YY1:-3.30882961815;LEF1_TCF7_TCF7L1,2:-3.59014744991;LHX3,4:-3.80022280329;ZNF143:-3.88449802739 | |top_motifs=STAT5{A,B}:6.04730313201;STAT2,4,6:5.91780238851;FOSL2:4.7890680776;IRF7:4.75527392776;NFE2:4.74366025827;IRF1,2:4.72039007102;NFE2L2:4.59235091947;CEBPA,B_DDIT3:4.52556143357;FOS_FOS{B,L1}_JUN{B,D}:4.43574560952;BACH2:4.3581695063;HLF:4.32448295046;STAT1,3:4.19795499726;PAX2:3.58341693728;SPIB:3.43420274536;NANOG{mouse}:3.38750142984;NFIL3:3.05380925925;SPI1:3.03730311516;NR1H4:3.03108700897;NFKB1_REL_RELA:3.01073485757;SREBF1,2:2.95726593749;FOXP3:2.70455308098;ETS1,2:2.70358324222;ATF6:2.57804600478;ATF4:2.49474979493;ATF5_CREB3:2.49392021711;EP300:2.4615099249;DMAP1_NCOR{1,2}_SMARC:2.38201462932;FOXN1:2.20233157028;HSF1,2:2.15137127393;NFATC1..3:2.02883153083;NFE2L1:2.00854970535;CDX1,2,4:1.91412863075;RUNX1..3:1.87297209835;CREB1:1.82150118596;ALX4:1.75597098733;JUN:1.67005361974;PAX8:1.57818627505;HMGA1,2:1.51033363206;HIF1A:1.44771196577;XBP1:1.3754440942;RXRA_VDR{dimer}:1.37472831069;ELF1,2,4:1.31376153;PDX1:1.23209510797;ATF2:1.21739433649;TGIF1:1.20439126681;PITX1..3:1.15221139705;MAFB:1.09328793378;NR6A1:1.01723120209;ZBTB16:0.954377572836;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.867743247176;PPARG:0.76909738834;SRF:0.693132564624;IKZF1:0.644686364494;HOX{A5,B5}:0.637853214822;PAX3,7:0.60900319048;HMX1:0.554221847514;PRDM1:0.522830173785;PAX4:0.520669075985;TFCP2:0.403218036521;BPTF:0.348930428571;HBP1_HMGB_SSRP1_UBTF:0.224381386889;IKZF2:0.210574182803;GLI1..3:0.189472979779;FOXD3:0.183843905314;FOXO1,3,4:0.181337087507;EN1,2:0.128147966547;TLX2:0.116594917415;GATA4:0.0768607304719;ESRRA:0.0610812296695;SPZ1:-0.0688058073145;PAX1,9:-0.103063845346;TBP:-0.120481523577;FOXL1:-0.138282487934;DBP:-0.184602613228;MEF2{A,B,C,D}:-0.222697398661;AHR_ARNT_ARNT2:-0.246925844108;SMAD1..7,9:-0.258604784941;EGR1..3:-0.290653316842;MYB:-0.30860346431;ALX1:-0.319159570038;FOXM1:-0.324962951369;POU2F1..3:-0.395731631997;RXR{A,B,G}:-0.477730796166;NKX6-1,2:-0.496397818806;FOX{D1,D2}:-0.51369556726;NKX3-2:-0.519029591195;ESR1:-0.544964005404;VSX1,2:-0.553621765388;RBPJ:-0.564937529778;NKX3-1:-0.603825594256;OCT4_SOX2{dimer}:-0.637734464915;FOXP1:-0.645381325886;NR3C1:-0.680669789957;RFX2..5_RFXANK_RFXAP:-0.704248441492;NANOG:-0.733271871826;MZF1:-0.811506871536;TFAP4:-0.813454225681;HOX{A6,A7,B6,B7}:-0.873706848747;NKX2-2,8:-0.916295702463;POU6F1:-0.93644905736;ZNF238:-0.978398975586;REST:-0.983508015352;HOXA9_MEIS1:-1.01116114406;TAL1_TCF{3,4,12}:-1.03419613455;POU5F1:-1.10934735218;PAX6:-1.14797946713;HNF4A_NR2F1,2:-1.15039343831;HNF1A:-1.15722140928;SOX2:-1.16688034796;PRRX1,2:-1.2214259941;MYFfamily:-1.2351169369;HES1:-1.25394902063;GZF1:-1.33002643412;NFIX:-1.34528048653;FOX{F1,F2,J1}:-1.38274191411;NHLH1,2:-1.39128311316;RORA:-1.42917557536;T:-1.44269825571;MED-1{core}:-1.46097411214;ZBTB6:-1.52477168973;SOX5:-1.55483823707;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56416511331;RREB1:-1.58713928405;ADNP_IRX_SIX_ZHX:-1.58980339014;CRX:-1.63062865673;PATZ1:-1.63111092571;ZNF384:-1.64845411441;NKX2-1,4:-1.65770123309;MTE{core}:-1.6903735573;E2F1..5:-1.69665764039;GATA6:-1.70266460914;TOPORS:-1.72301921003;TEAD1:-1.74359453119;CUX2:-1.76449671508;POU3F1..4:-1.78548498533;MTF1:-1.7954340696;GTF2A1,2:-1.81200286605;TLX1..3_NFIC{dimer}:-1.82212951586;TFAP2B:-1.8304567053;ZNF148:-1.8372659229;ZFP161:-1.8565904012;XCPE1{core}:-1.87567243322;ZEB1:-1.88135803574;GTF2I:-1.8874735255;SOX{8,9,10}:-1.90227426097;UFEwm:-1.91346376984;RFX1:-1.91465618401;BREu{core}:-1.94852941798;TP53:-1.96960638762;SP1:-1.97325075482;ZIC1..3:-1.97855667074;TFDP1:-2.01188026806;MAZ:-2.01671023313;NKX2-3_NKX2-5:-2.05062592464;MYOD1:-2.05825906025;FOXA2:-2.08235367036;TFAP2{A,C}:-2.1281339726;SNAI1..3:-2.1301519423;KLF4:-2.19386292454;GFI1B:-2.19395113573;CDC5L:-2.21063248717;FOXQ1:-2.21803718035;ARID5B:-2.23713908788;EVI1:-2.27450927618;GCM1,2:-2.28189452187;HIC1:-2.30553060668;TBX4,5:-2.31829085121;ELK1,4_GABP{A,B1}:-2.32469268197;ONECUT1,2:-2.35303649402;TEF:-2.37073229109;MYBL2:-2.41411476429;HOX{A4,D4}:-2.45563253332;AIRE:-2.50853687275;LMO2:-2.51706840092;ZNF423:-2.52066877811;bHLH_family:-2.54398455906;HAND1,2:-2.60319626017;EBF1:-2.6035788127;POU1F1:-2.69395753844;NFY{A,B,C}:-2.78105683633;PAX5:-2.83237109806;GFI1:-2.92184672088;FOX{I1,J2}:-2.95491436959;PBX1:-2.95904062292;NR5A1,2:-2.99039643821;SOX17:-3.05737919127;AR:-3.17560697141;NRF1:-3.30877459312;YY1:-3.30882961815;LEF1_TCF7_TCF7L1,2:-3.59014744991;LHX3,4:-3.80022280329;ZNF143:-3.88449802739 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11860-125A6;search_select_hide=table117:FF:11860-125A6 | |||
}} | }} |
Latest revision as of 18:24, 4 June 2020
Name: | CD14+ monocytes - treated with BCG, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13465 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13465
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13465
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0785 |
10 | 10 | 0.0213 |
100 | 100 | 0.916 |
101 | 101 | 0.931 |
102 | 102 | 0.913 |
103 | 103 | 0.314 |
104 | 104 | 0.526 |
105 | 105 | 0.17 |
106 | 106 | 6.21801e-4 |
107 | 107 | 0.18 |
108 | 108 | 0.964 |
109 | 109 | 0.248 |
11 | 11 | 0.121 |
110 | 110 | 0.146 |
111 | 111 | 0.0342 |
112 | 112 | 0.341 |
113 | 113 | 0.517 |
114 | 114 | 0.0143 |
115 | 115 | 0.206 |
116 | 116 | 0.73 |
117 | 117 | 0.0591 |
118 | 118 | 0.185 |
119 | 119 | 0.15 |
12 | 12 | 0.358 |
120 | 120 | 0.534 |
121 | 121 | 0.584 |
122 | 122 | 0.616 |
123 | 123 | 0.187 |
124 | 124 | 0.744 |
125 | 125 | 0.332 |
126 | 126 | 0.289 |
127 | 127 | 0.443 |
128 | 128 | 0.0379 |
129 | 129 | 0.338 |
13 | 13 | 0.111 |
130 | 130 | 0.186 |
131 | 131 | 0.94 |
132 | 132 | 0.113 |
133 | 133 | 0.476 |
134 | 134 | 0.474 |
135 | 135 | 0.652 |
136 | 136 | 0.981 |
137 | 137 | 0.0316 |
138 | 138 | 0.242 |
139 | 139 | 0.054 |
14 | 14 | 0.472 |
140 | 140 | 0.305 |
141 | 141 | 0.202 |
142 | 142 | 0.0698 |
143 | 143 | 0.0178 |
144 | 144 | 0.66 |
145 | 145 | 0.267 |
146 | 146 | 0.791 |
147 | 147 | 0.636 |
148 | 148 | 0.0133 |
149 | 149 | 0.861 |
15 | 15 | 0.147 |
150 | 150 | 0.397 |
151 | 151 | 0.353 |
152 | 152 | 0.243 |
153 | 153 | 0.828 |
154 | 154 | 0.563 |
155 | 155 | 0.88 |
156 | 156 | 0.638 |
157 | 157 | 0.679 |
158 | 158 | 0.0663 |
159 | 159 | 0.385 |
16 | 16 | 0.248 |
160 | 160 | 0.309 |
161 | 161 | 0.475 |
162 | 162 | 0.305 |
163 | 163 | 0.0594 |
164 | 164 | 0.103 |
165 | 165 | 0.194 |
166 | 166 | 0.645 |
167 | 167 | 0.157 |
168 | 168 | 0.108 |
169 | 169 | 0.00638 |
17 | 17 | 0.195 |
18 | 18 | 0.131 |
19 | 19 | 0.408 |
2 | 2 | 0.692 |
20 | 20 | 0.218 |
21 | 21 | 0.557 |
22 | 22 | 0.319 |
23 | 23 | 0.035 |
24 | 24 | 0.299 |
25 | 25 | 0.469 |
26 | 26 | 0.0384 |
27 | 27 | 0.663 |
28 | 28 | 0.481 |
29 | 29 | 0.23 |
3 | 3 | 0.094 |
30 | 30 | 0.457 |
31 | 31 | 0.786 |
32 | 32 | 0.972 |
33 | 33 | 0.26 |
34 | 34 | 0.729 |
35 | 35 | 0.154 |
36 | 36 | 0.0716 |
37 | 37 | 0.0794 |
38 | 38 | 0.38 |
39 | 39 | 0.802 |
4 | 4 | 0.835 |
40 | 40 | 0.217 |
41 | 41 | 0.0196 |
42 | 42 | 0.326 |
43 | 43 | 0.0322 |
44 | 44 | 0.901 |
45 | 45 | 0.786 |
46 | 46 | 0.147 |
47 | 47 | 0.452 |
48 | 48 | 0.436 |
49 | 49 | 0.129 |
5 | 5 | 0.321 |
50 | 50 | 0.98 |
51 | 51 | 0.439 |
52 | 52 | 0.369 |
53 | 53 | 0.471 |
54 | 54 | 0.379 |
55 | 55 | 0.454 |
56 | 56 | 0.663 |
57 | 57 | 0.749 |
58 | 58 | 0.149 |
59 | 59 | 0.228 |
6 | 6 | 0.787 |
60 | 60 | 0.0412 |
61 | 61 | 0.704 |
62 | 62 | 0.0767 |
63 | 63 | 0.413 |
64 | 64 | 0.395 |
65 | 65 | 0.212 |
66 | 66 | 0.26 |
67 | 67 | 0.492 |
68 | 68 | 0.947 |
69 | 69 | 0.331 |
7 | 7 | 0.266 |
70 | 70 | 0.0329 |
71 | 71 | 0.0318 |
72 | 72 | 0.193 |
73 | 73 | 0.185 |
74 | 74 | 0.0719 |
75 | 75 | 0.121 |
76 | 76 | 0.172 |
77 | 77 | 0.443 |
78 | 78 | 0.0905 |
79 | 79 | 0.481 |
8 | 8 | 0.34 |
80 | 80 | 0.22 |
81 | 81 | 0.318 |
82 | 82 | 0.144 |
83 | 83 | 0.0373 |
84 | 84 | 0.163 |
85 | 85 | 0.0297 |
86 | 86 | 0.0848 |
87 | 87 | 0.599 |
88 | 88 | 0.677 |
89 | 89 | 0.193 |
9 | 9 | 0.335 |
90 | 90 | 0.0786 |
91 | 91 | 0.354 |
92 | 92 | 0.214 |
93 | 93 | 0.513 |
94 | 94 | 0.0653 |
95 | 95 | 0.348 |
96 | 96 | 0.435 |
97 | 97 | 0.696 |
98 | 98 | 0.101 |
99 | 99 | 0.103 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13465
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011103 human CD14-positive monocytes - treated with BCG sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000628 (Bacillus Calmette-Guerin treatment sample)
0011103 (human CD14-positive monocytes - treated with BCG sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)