FF:10023-101D5: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	skeletal muscle, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10629
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle
dev stage	55,79,79 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -14
catalog number	Cat:AM6000 Lot:0910061 -14
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005588

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10629		CAGE		DRX008720		DRR009592

Accession ID Hg19

Library id		BAM		CTSS
CNhs10629		DRZ001017		DRZ002402

Accession ID Hg38

Library id		BAM		CTSS
CNhs10629		DRZ012367		DRZ013752

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.042
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.336
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.307
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.18
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.122
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.232
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0811
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0424
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.492
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.355
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0424
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.15
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.387
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.016
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0424
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-1.116
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0424
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0774
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.209
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.117
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00972
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.553
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	4.206229e-4
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0424
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.208
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0424
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.0424
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0811
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	1.021
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.78
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.0424
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0424
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0424
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	1.027
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.773
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10629

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0244
MA0003.1	MA0003.1	0.184
MA0004.1	MA0004.1	0.993
MA0006.1	MA0006.1	0.351
MA0007.1	MA0007.1	0.485
MA0009.1	MA0009.1	0.127
MA0014.1	MA0014.1	0.449
MA0017.1	MA0017.1	0.0949
MA0018.2	MA0018.2	0.125
MA0019.1	MA0019.1	0.101
MA0024.1	MA0024.1	9.08118e-4
MA0025.1	MA0025.1	0.243
MA0027.1	MA0027.1	0.651
MA0028.1	MA0028.1	1.53694e-7
MA0029.1	MA0029.1	0.968
MA0030.1	MA0030.1	0.01
MA0031.1	MA0031.1	0.0367
MA0035.2	MA0035.2	0.486
MA0038.1	MA0038.1	0.00528
MA0039.2	MA0039.2	0.00161
MA0040.1	MA0040.1	0.375
MA0041.1	MA0041.1	0.213
MA0042.1	MA0042.1	0.243
MA0043.1	MA0043.1	0.032
MA0046.1	MA0046.1	0.615
MA0047.2	MA0047.2	0.146
MA0048.1	MA0048.1	1.46164e-5
MA0050.1	MA0050.1	0.0039
MA0051.1	MA0051.1	0.197
MA0052.1	MA0052.1	3.12138e-44
MA0055.1	MA0055.1	1.12303e-5
MA0057.1	MA0057.1	0.98
MA0058.1	MA0058.1	0.952
MA0059.1	MA0059.1	0.554
MA0060.1	MA0060.1	3.76103e-5
MA0061.1	MA0061.1	0.0102
MA0062.2	MA0062.2	1.95594e-15
MA0065.2	MA0065.2	0.0308
MA0066.1	MA0066.1	0.281
MA0067.1	MA0067.1	0.706
MA0068.1	MA0068.1	0.0415
MA0069.1	MA0069.1	0.71
MA0070.1	MA0070.1	0.621
MA0071.1	MA0071.1	0.142
MA0072.1	MA0072.1	0.631
MA0073.1	MA0073.1	0.568
MA0074.1	MA0074.1	0.53
MA0076.1	MA0076.1	4.47677e-8
MA0077.1	MA0077.1	0.131
MA0078.1	MA0078.1	0.263
MA0079.2	MA0079.2	0.961
MA0080.2	MA0080.2	5.33263e-6
MA0081.1	MA0081.1	0.0217
MA0083.1	MA0083.1	0.00425
MA0084.1	MA0084.1	0.834
MA0087.1	MA0087.1	0.371
MA0088.1	MA0088.1	0.208
MA0090.1	MA0090.1	0.141
MA0091.1	MA0091.1	0.00252
MA0092.1	MA0092.1	0.129
MA0093.1	MA0093.1	0.983
MA0099.2	MA0099.2	1.86655e-5
MA0100.1	MA0100.1	0.0422
MA0101.1	MA0101.1	0.0222
MA0102.2	MA0102.2	0.0481
MA0103.1	MA0103.1	0.625
MA0104.2	MA0104.2	0.34
MA0105.1	MA0105.1	0.0325
MA0106.1	MA0106.1	0.436
MA0107.1	MA0107.1	0.00997
MA0108.2	MA0108.2	5.62196e-17
MA0111.1	MA0111.1	0.923
MA0112.2	MA0112.2	3.28312e-4
MA0113.1	MA0113.1	6.38467e-4
MA0114.1	MA0114.1	0.131
MA0115.1	MA0115.1	0.0493
MA0116.1	MA0116.1	0.0799
MA0117.1	MA0117.1	0.744
MA0119.1	MA0119.1	0.165
MA0122.1	MA0122.1	0.103
MA0124.1	MA0124.1	0.633
MA0125.1	MA0125.1	0.358
MA0131.1	MA0131.1	0.0245
MA0135.1	MA0135.1	0.971
MA0136.1	MA0136.1	3.6327e-8
MA0137.2	MA0137.2	0.551
MA0138.2	MA0138.2	0.855
MA0139.1	MA0139.1	0.131
MA0140.1	MA0140.1	0.388
MA0141.1	MA0141.1	0.00142
MA0142.1	MA0142.1	0.0552
MA0143.1	MA0143.1	0.423
MA0144.1	MA0144.1	0.424
MA0145.1	MA0145.1	0.0797
MA0146.1	MA0146.1	0.395
MA0147.1	MA0147.1	0.276
MA0148.1	MA0148.1	0.153
MA0149.1	MA0149.1	0.214
MA0150.1	MA0150.1	0.921
MA0152.1	MA0152.1	0.729
MA0153.1	MA0153.1	0.2
MA0154.1	MA0154.1	0.993
MA0155.1	MA0155.1	0.115
MA0156.1	MA0156.1	9.14842e-12
MA0157.1	MA0157.1	0.0783
MA0159.1	MA0159.1	0.13
MA0160.1	MA0160.1	0.0146
MA0162.1	MA0162.1	0.565
MA0163.1	MA0163.1	0.0824
MA0164.1	MA0164.1	0.637
MA0258.1	MA0258.1	0.00704
MA0259.1	MA0259.1	0.254

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10629

Novel motif	Logo	P-value
1	1	0.568
10	10	0.656
100	100	0.427
101	101	0.0996
102	102	0.678
103	103	0.562
104	104	0.987
105	105	0.478
106	106	0.157
107	107	0.0661
108	108	0.251
109	109	0.56
11	11	0.735
110	110	0.315
111	111	0.755
112	112	0.191
113	113	0.895
114	114	0.679
115	115	0.524
116	116	0.424
117	117	0.218
118	118	0.0572
119	119	0.0778
12	12	0.963
120	120	0.172
121	121	0.962
122	122	0.295
123	123	0.0641
124	124	0.263
125	125	0.694
126	126	0.607
127	127	0.788
128	128	0.064
129	129	0.902
13	13	0.608
130	130	0.872
131	131	0.154
132	132	0.389
133	133	0.00154
134	134	0.124
135	135	0.0561
136	136	0.496
137	137	0.757
138	138	0.918
139	139	0.00829
14	14	0.205
140	140	0.355
141	141	0.928
142	142	0.785
143	143	0.0241
144	144	0.585
145	145	0.836
146	146	0.318
147	147	0.00153
148	148	0.28
149	149	0.0792
15	15	0.874
150	150	0.644
151	151	0.147
152	152	0.414
153	153	0.125
154	154	0.986
155	155	0.546
156	156	0.219
157	157	0.505
158	158	0.492
159	159	0.586
16	16	0.543
160	160	0.717
161	161	0.2
162	162	0.771
163	163	0.49
164	164	0.113
165	165	0.0174
166	166	0.427
167	167	0.388
168	168	0.597
169	169	0.128
17	17	0.863
18	18	0.64
19	19	0.0208
2	2	0.141
20	20	0.0255
21	21	0.417
22	22	0.0552
23	23	0.181
24	24	0.242
25	25	0.706
26	26	0.343
27	27	0.648
28	28	0.609
29	29	0.0975
3	3	0.896
30	30	0.153
31	31	0.494
32	32	0.556
33	33	0.346
34	34	0.328
35	35	0.451
36	36	0.05
37	37	0.472
38	38	0.961
39	39	0.0405
4	4	0.996
40	40	0.0387
41	41	0.395
42	42	0.399
43	43	0.687
44	44	0.0203
45	45	0.13
46	46	0.869
47	47	0.409
48	48	0.442
49	49	0.923
5	5	0.388
50	50	0.502
51	51	0.909
52	52	0.0701
53	53	0.644
54	54	0.488
55	55	0.195
56	56	0.824
57	57	0.766
58	58	0.58
59	59	0.516
6	6	0.815
60	60	0.0617
61	61	0.791
62	62	0.223
63	63	0.205
64	64	0.613
65	65	0.344
66	66	0.0273
67	67	0.549
68	68	0.373
69	69	0.515
7	7	0.229
70	70	0.314
71	71	0.376
72	72	0.356
73	73	0.537
74	74	0.414
75	75	0.399
76	76	0.184
77	77	0.0783
78	78	0.123
79	79	0.0231
8	8	0.672
80	80	0.575
81	81	0.485
82	82	0.381
83	83	0.632
84	84	0.302
85	85	0.0132
86	86	0.375
87	87	0.461
88	88	0.992
89	89	0.128
9	9	0.376
90	90	0.993
91	91	0.311
92	92	0.177
93	93	0.862
94	94	0.518
95	95	0.0582
96	96	0.406
97	97	0.94
98	98	0.1
99	99	0.438

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10629

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010023 human skeletal muscle - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010023 (human skeletal muscle - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005588
-|accession_numbers=CAGE;DRX008720;DRR009592;DRZ001017;DRZ002402
+|accession_numbers=CAGE;DRX008720;DRR009592;DRZ001017;DRZ002402;DRZ012367;DRZ013752
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr12:81101404..81101421,+!p1@MYF6!2.76!577.17!MYF6;;chr12:10875658..10875708,-!p2@CSDA!2.59!856.21!CSDA;;chr12:52437488..52437507,+!p2@NR4A1!2.44!276.47!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!2.43!470.81!ZFP106;;chr1:151804244..151804310,-!p1@RORC!2.13!135.00!RORC;;chr1:203055129..203055147,-!p1@MYOG!1.94!86.24!MYOG;;chr12:10875831..10876025,-!p1@CSDA!1.88!5761.44!CSDA;;chr12:10870927..10870966,-!p5@CSDA!1.86!71.56!CSDA;;chr12:81101472..81101483,+!p2@MYF6!1.85!69.71!MYF6;;chr20:62680984..62680999,-!p1@SOX18!1.76!73.20!SOX18;;chr3:141150883..141150961,+!p6@ZBTB38!1.76!56.16!ZBTB38;;chr3:189349162..189349207,+!p2@TP63!1.72!51.23!TP63;;chr11:113930425..113930471,+!p1@ZBTB16!1.65!61.60!ZBTB16;;chr22:19748231..19748317,+!p1@TBX1!1.65!44.04!TBX1;;chr3:141151009..141151033,+!p10@ZBTB38!1.63!41.99!ZBTB38;;chr12:54378923..54378966,+!p1@HOXC10!1.54!33.37!HOXC10;;chr1:170633348..170633399,+!p2@PRRX1!1.52!43.22!PRRX1;;chr21:39870339..39870443,-!p1@ERG!1.52!32.34!ERG;;chr12:10875768..10875808,-!p3@CSDA!1.51!47.22!CSDA;;chr3:126076242..126076257,-!p1@KLF15!1.51!38.40!KLF15;;chr17:38256799..38256815,-!p3@NR1D1!1.50!54.41!NR1D1;;chr3:69788576..69788648,+!p1@MITF!1.49!153.79!MITF;;chr12:10870989..10871013,-!p11@CSDA!1.49!29.77!CSDA;;chr8:55370487..55370503,+!p1@SOX17!1.49!29.57!SOX17;;chr14:61116183..61116208,-!p1@SIX1!1.46!102.35!SIX1;;chr17:38256822..38256851,-!p1@NR1D1!1.45!207.07!NR1D1;;chr1:170632285..170632309,+!p1@PRRX1!1.45!30.49!PRRX1;;chr1:119530493..119530572,-!p1@TBX15!1.44!26.49!TBX15;;chr3:189348969..189349018,+!p4@TP63!1.44!26.49!TP63;;chr15:60884706..60884743,-!p1@RORA!1.42!127.51!RORA;;chr12:26277817..26277863,-!p2@BHLHE41!1.42!33.78!BHLHE41;;chr7:73038839..73038862,-!p1@MLXIPL!1.41!24.43!MLXIPL;;chr1:170633262..170633285,+!p3@PRRX1!1.40!27.82!PRRX1;;chr8:10588010..10588030,-!p1@SOX7!1.40!24.23!SOX7;;chr13:41240717..41240735,-!p2@FOXO1!1.39!154.61!FOXO1;;chr12:81101442..81101449,+!p3@MYF6!1.38!23.00!MYF6;;chr6:126070769..126070801,+!p1@HEY2!1.35!24.33!HEY2;;chr12:10871020..10871032,-!p26@CSDA!1.34!20.74!CSDA;;chr11:125034640..125034655,+!p1@PKNOX2!1.33!20.33!PKNOX2;;chr9:102584159..102584174,+!p2@NR4A3!1.32!35.42!NR4A3;;chr12:26277956..26277980,-!p1@BHLHE41!1.30!66.63!BHLHE41;;chr12:3069037..3069119,+!p2@TEAD4!1.29!62.21!TEAD4;;chr7:27205136..27205164,-!p1@HOXA9!1.29!18.48!HOXA9;;chr12:54393880..54393962,+!p1@HOXC9!1.27!17.66!HOXC9;;chr5:134369879..134369898,-!p2@PITX1!1.26!17.14!PITX1;;chr13:41240737..41240787,-!p1@FOXO1!1.24!189.52!FOXO1;;chr11:113930291..113930339,+!p2@ZBTB16!1.24!26.90!ZBTB16;;chr1:170633058..170633084,+!p5@PRRX1!1.24!16.22!PRRX1;;chr8:48650715..48650735,-!p1@CEBPD!1.23!1963.73!CEBPD;;chr1:170632959..170632987,+!p4@PRRX1!1.23!17.35!PRRX1;;chr11:17741111..17741124,+!p1@MYOD1!1.23!15.91!MYOD1;;chr10:63809106..63809127,+!p1@ARID5B!1.22!207.07!ARID5B;;chr3:187463179..187463201,-!p2@BCL6!1.20!61.19!BCL6;;chr1:214161272..214161322,+!p1@PROX1!1.20!20.74!PROX1;;chr7:15726296..15726315,-!p1@MEOX2!1.20!14.99!MEOX2;;chr17:80797886..80797906,-!p1@ZNF750!1.20!14.89!ZNF750;;chr1:40105299..40105326,-!p1@HEYL!1.19!14.37!HEYL;;chr12:81110684..81110700,+!p1@MYF5!1.18!14.06!MYF5;;chr9:73028814..73028895,-!p1@KLF9!1.17!135.72!KLF9;;chr4:87928413..87928433,+!p3@AFF1!1.17!85.21!AFF1;;chr12:10865870..10865888,-!p6@CSDA!1.16!18.48!CSDA;;chr8:25902876..25902936,-!p1@EBF2!1.16!13.55!EBF2;;chr1:165414325..165414369,-!p1@RXRG!1.16!13.45!RXRG;;chr12:10875612..10875631,-!p9@CSDA!1.15!15.71!CSDA;;chr7:15726243..15726293,-!p2@MEOX2!1.15!13.24!MEOX2;;chr7:27196267..27196311,-!p1@HOXA7!1.15!13.14!HOXA7;;chr11:16627528..16627550,-!p7@SOX6!1.14!12.94!SOX6;;chr19:46801639..46801699,+!p1@HIF3A!1.14!12.94!HIF3A;;chr16:79634624..79634642,-!p1@MAF!1.12!48.46!MAF;;chr16:79633894..79633954,-!p3@MAF!1.12!23.72!MAF;;chr9:14313641..14313652,-!p13@NFIB!1.12!12.32!NFIB;;chr2:242556880..242556899,-!p5@THAP4!1.12!12.22!THAP4;;chr17:41739283..41739297,-!p1@MEOX1!1.12!12.11!MEOX1;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.81!ZNF366;;chr10:63809013..63809041,+!p3@ARID5B!1.10!64.88!ARID5B;;chr14:73360799..73360817,-!p1@DPF3!1.10!40.45!DPF3;;chr10:63809077..63809089,+!p5@ARID5B!1.10!25.36!ARID5B;;chr11:113930401..113930422,+!p3@ZBTB16!1.10!11.60!ZBTB16;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.45!PITX1;;chr12:3068957..3068978,+!p6@TEAD4!1.09!12.83!TEAD4;;chr1:10856639..10856662,-!p2@CASZ1!1.09!11.40!CASZ1;;chr6:108977520..108977534,+!p7@FOXO3!1.09!11.29!FOXO3;;chr7:150945754..150945789,-!p2@SMARCD3!1.08!33.88!SMARCD3;;chr8:106330656..106330684,+!p1@ZFPM2!1.08!29.05!ZFPM2;;chr2:85981222..85981259,+!p2@ATOH8!1.08!18.48!ATOH8;;chr12:10871049..10871064,-!p19@CSDA!1.08!10.98!CSDA;;chr12:52445218..52445237,+!p1@NR4A1!1.07!137.36!NR4A1;;chr3:52001396..52001425,-!p4@PCBP4!1.07!19.10!PCBP4;;chr12:10871068..10871079,-!p25@CSDA!1.07!10.78!CSDA;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.81!TCF4;;chr17:46126136..46126152,+!p1@NFE2L1!1.05!531.90!NFE2L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.05!10.16!HOXC5;;chr7:150946015..150946070,-!p3@SMARCD3!1.04!21.97!SMARCD3;;chr7:150945865..150945896,-!p4@SMARCD3!1.04!9.96!SMARCD3;;chr12:10854595..10854628,-!p7@CSDA!1.02!13.24!CSDA;;chrX:106960285..106960299,-!p1@TSC22D3!1.01!251.83!TSC22D3;;chr12:26277929..26277955,-!p3@BHLHE41!1.01!13.24!BHLHE41;;chrX:70315688..70315709,+!p1@FOXO4!1.00!21.46!FOXO4;;chr18:53089453..53089482,-!p11@TCF4!1.00!9.03!TCF4;;chr12:10876282..10876288,-!p29@CSDA!1.00!8.93!CSDA;;chr4:87856191..87856208,+!p2@AFF1!0.99!70.84!AFF1;;chr2:119605214..119605230,-!p1@EN1!0.99!8.73!EN1;;chr1:8483878..8483907,-!p4@RERE!0.98!33.78!RERE;;chr3:52001426..52001447,-!p3@PCBP4!0.98!24.64!PCBP4;;chr7:113726357..113726443,+!p1@FOXP2!0.98!15.09!FOXP2;;chr9:94186085..94186096,-!p3@NFIL3!0.98!14.17!NFIL3;;chr3:126076264..126076305,-!p2@KLF15!0.98!12.22!KLF15;;chr11:16629261..16629284,-!p1@SOX6!0.98!8.52!SOX6;;chr19:16435625..16435682,+!p1@KLF2!0.97!273.90!KLF2;;chr3:114343768..114343822,-!p1@ZBTB20!0.97!37.68!ZBTB20;;chr12:10856713..10856723,-!p23@CSDA!0.97!8.32!CSDA;;chr13:37494365..37494381,-!p1@SMAD9!0.96!14.27!SMAD9;;chr17:53342311..53342400,+!p1@HLF!0.96!9.34!HLF;;chr11:47400078..47400106,-!p1@SPI1!0.96!8.21!SPI1;;chr12:10875481..10875504,-!p14@CSDA!0.96!8.21!CSDA;;chr1:8483756..8483809,-!p5@RERE!0.95!22.48!RERE;;chrX:24167548..24167617,+!p2@ZFX!0.94!24.33!ZFX;;chr8:80679993..80680011,-!p1@HEY1!0.94!11.50!HEY1;;chrX:107018969..107019024,-!p6@TSC22D3!0.94!10.88!TSC22D3;;chr13:27998854..27998866,+!p3@GTF3A!0.93!15.40!GTF3A;;chr12:3068979..3068993,+!p11@TEAD4!0.93!7.60!TEAD4;;chr1:216896752..216896778,-!p1@ESRRG!0.93!7.60!ESRRG;;chr12:10875548..10875563,-!p13@CSDA!0.93!7.49!CSDA;;chr8:144512897..144512903,-!p1@MAFA!0.93!7.49!MAFA;;chr9:73028786..73028797,-!p11@KLF9!0.93!7.49!KLF9;;chr4:111543899..111543923,-!p6@PITX2!0.93!7.49!PITX2;;chr17:6926362..6926377,+!p1@BCL6B!0.92!7.39!BCL6B;;chrX:25034067..25034088,-!p1@ARX!0.92!7.39!ARX;;chr11:12766597..12766618,+!p11@TEAD1!0.92!7.29!TEAD1;;chr20:48807351..48807384,+!p1@CEBPB!0.91!763.30!CEBPB;;chr19:3366570..3366619,+!p1@NFIC!0.91!237.97!NFIC;;chr22:38597987..38598021,+!p2@MAFF!0.91!45.17!MAFF;;chr10:63808979..63808990,+!p8@ARID5B!0.91!7.80!ARID5B;;chr13:41240387..41240405,-!p3@FOXO1!0.91!7.19!FOXO1;;chr9:94186101..94186122,-!p1@NFIL3!0.90!102.46!NFIL3;;chr1:156470515..156470542,-!p2@MEF2D!0.90!38.29!MEF2D;;chr1:216978721..216978728,-!p13@ESRRG!0.90!6.98!ESRRG;;chr12:81101462..81101467,+!p4@MYF6!0.90!6.98!MYF6;;chr2:176994408..176994492,+!p1@HOXD8!0.90!6.88!HOXD8;;chr22:38598086..38598105,+!p1@MAFF!0.89!76.28!MAFF;;chrX:106960180..106960197,-!p2@TSC22D3!0.89!26.90!TSC22D3;;chr11:12696002..12696022,+!p2@TEAD1!0.89!17.25!TEAD1;;chr9:102584262..102584276,+!p1@NR4A3!0.89!15.81!NR4A3;;chr12:10875823..10875827,-!p22@CSDA!0.89!6.78!CSDA;;chr12:54379029..54379057,+!p2@HOXC10!0.89!6.78!HOXC10;;chr1:156470556..156470643,-!p1@MEF2D!0.88!280.58!MEF2D;;chr12:81101753..81101762,+!p5@MYF6!0.88!6.67!MYF6;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.57!EBF3;;chr12:10856697..10856712,-!p12@CSDA!0.88!6.57!CSDA;;chr19:13106214..13106382,+!p1@NFIX!0.87!158.92!NFIX;;chr9:137218341..137218361,+!p2@RXRA!0.87!27.62!RXRA;;chr18:77155922..77155939,+!p1@NFATC1!0.87!18.58!NFATC1;;chr2:19558373..19558392,-!p1@OSR1!0.87!18.58!OSR1;;chrX:107019163..107019179,-!p7@TSC22D3!0.87!7.49!TSC22D3;;chr4:149363494..149363543,-!p1@NR3C2!0.87!6.47!NR3C2;;chr1:61548225..61548299,+!p1@NFIA!0.86!86.03!NFIA;;chr3:18466787..18466839,-!p1@SATB1!0.86!29.26!SATB1;;chr19:3359257..3359362,+!p3@NFIC!0.86!19.81!NFIC;;chr1:8483849..8483868,-!p14@RERE!0.86!10.47!RERE;;chr20:50159198..50159299,-!p1@NFATC2!0.86!9.44!NFATC2;;chr17:38256877..38256900,-!p2@NR1D1!0.85!20.43!NR1D1;;chr1:8484314..8484348,-!p7@RERE!0.85!17.14!RERE;;chr10:63809134..63809145,+!p6@ARID5B!0.85!14.68!ARID5B;;chr16:79634595..79634620,-!p2@MAF!0.85!11.50!MAF;;chr1:8483723..8483752,-!p12@RERE!0.85!9.75!RERE;;chr6:91006575..91006602,-!p2@BACH2!0.85!9.24!BACH2;;chr12:10865922..10865934,-!p15@CSDA!0.85!6.16!CSDA;;chr11:16627614..16627651,-!p4@SOX6!0.85!6.06!SOX6;;chr17:38256590..38256599,-!p8@NR1D1!0.85!6.06!NR1D1;;chr1:10856694..10856715,-!p3@CASZ1!0.85!6.06!CASZ1;;chr1:165414227..165414242,-!p2@RXRG!0.85!6.06!RXRG;;chr21:40177845..40177863,+!p1@ETS2!0.84!375.23!ETS2;;chr6:41703296..41703367,-!p1@TFEB!0.84!31.93!TFEB;;chr9:73029219..73029289,-!p2@KLF9!0.84!19.10!KLF9;;chr3:5021191..5021202,+!p3@BHLHE40!0.84!16.84!BHLHE40;;chr13:72441315..72441454,-!p1@DACH1!0.84!12.42!DACH1;;chr11:113930355..113930366,+!p5@ZBTB16!0.84!5.95!ZBTB16;;chr2:24714729..24714761,+!p1@NCOA1!0.84!5.95!NCOA1;;chr2:68592406..68592424,+!p1@PLEK!0.84!5.95!PLEK;;chr7:27196217..27196246,-!p2@HOXA7!0.84!5.95!HOXA7;;chr1:165414259..165414273,-!p6@RXRG!0.84!5.95!RXRG;;chr7:27169801..27169844,-!p2@HOXA4!0.84!5.85!HOXA4;;chr2:45236540..45236577,-!p1@SIX2!0.83!5.75!SIX2;;chr1:119530636..119530653,-!p2@TBX15!0.83!5.75!TBX15;;chr2:97202480..97202499,+!p1@ARID5A!0.82!61.70!ARID5A;;chr13:45151259..45151326,-!p2@TSC22D1!0.82!35.83!TSC22D1;;chr4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%252c%2520adult%252c%2520pool1.CNhs10629.10023-101D5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10023-101D5
 |is_a=EFO:0002091;;FF:0010023
@@ Line 46: / Line 52: @@
 |library_id=CNhs10629
 |library_id_phase_based=2:CNhs10629
-|name="skeletal muscle, adult, pool1"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10023
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10023
+|name=skeletal muscle, adult, pool1
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs10629,LSID657,release008,COMPLETED"
+|profile_hcage=CNhs10629,LSID657,release008,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 76: / Line 87: @@
 |sample_company=Ambion
 |sample_description=
-|sample_dev_stage="55,79,79 years old adult"
+|sample_dev_stage=55,79,79 years old adult
 |sample_disease=normal
 |sample_donor(cell lot)=3 pool
@@ Line 90: / Line 101: @@
 |top_motifs=MEF2{A,B,C,D}:7.94112847148;NR1H4:4.79944954124;FOXL1:3.8639796894;NFE2L1:3.71903709557;NR5A1,2:3.68661967348;AR:3.5408665247;ESRRA:3.50270092203;PDX1:3.46119976025;MYOD1:3.2871534463;NKX2-2,8:3.07178063432;TLX2:2.81596630824;HOX{A4,D4}:2.80642997834;MAFB:2.59615221606;SPZ1:2.58014873508;NFIX:2.48063006716;NHLH1,2:2.47500766093;TGIF1:2.40807532562;NR6A1:2.3551834701;SOX5:2.34132470459;SRF:2.25641150569;RORA:2.24994654335;SMAD1..7,9:2.24283925828;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.17747406279;RXR{A,B,G}:2.08012308852;ESR1:2.02000651855;NKX3-2:1.91514384142;IKZF2:1.87666225722;ATF2:1.84036222831;FOX{D1,D2}:1.79331719837;TFAP4:1.77989921921;POU6F1:1.7230746314;HAND1,2:1.71420106306;STAT5{A,B}:1.69581654742;TFAP2{A,C}:1.66921412162;FOXQ1:1.6198897969;HSF1,2:1.54954267298;PATZ1:1.52892243887;NFATC1..3:1.52630459572;EVI1:1.42977058049;FOXO1,3,4:1.41116901982;CUX2:1.39895568459;TBP:1.38139153605;PAX6:1.37459136533;HES1:1.37305026087;YY1:1.36909851296;NKX6-1,2:1.3674591793;GCM1,2:1.36703636086;GATA4:1.34804799248;POU1F1:1.31864559645;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2668402868;HOX{A6,A7,B6,B7}:1.20726178227;ARID5B:1.1990256978;FOXP3:1.18370179883;GLI1..3:1.16266494615;BPTF:1.16098199012;FOX{F1,F2,J1}:1.14850451471;POU3F1..4:1.10880089968;MTF1:1.09038928986;UFEwm:1.02721790148;TFCP2:1.00924977493;GTF2A1,2:0.992661725573;RREB1:0.989763978833;STAT2,4,6:0.983410558029;TLX1..3_NFIC{dimer}:0.972702705279;FOXM1:0.953672221865;LMO2:0.948526721194;HIC1:0.933309682992;PAX1,9:0.915737126536;ZNF423:0.882579180557;ALX4:0.878687935716;MAZ:0.850713235121;MYBL2:0.756223010045;EN1,2:0.752096333372;TEAD1:0.745389816878;IKZF1:0.709449773568;TFAP2B:0.690756274676;LEF1_TCF7_TCF7L1,2:0.680223012289;TBX4,5:0.674717660743;ZIC1..3:0.65583877547;IRF7:0.654399922835;NR3C1:0.639786897769;MYFfamily:0.62373291495;MED-1{core}:0.614301731934;RFX2..5_RFXANK_RFXAP:0.609044896646;ATF4:0.57650955933;SREBF1,2:0.565816001166;KLF4:0.530140824838;NKX2-1,4:0.521162114957;MTE{core}:0.519990993944;MZF1:0.500609784639;PBX1:0.492579157707;bHLH_family:0.479144623901;TP53:0.478230757145;ZBTB16:0.46809468577;GFI1B:0.449640911061;CDX1,2,4:0.422081366599;REST:0.420605209421;PPARG:0.399161589704;SNAI1..3:0.387069031573;EGR1..3:0.379037423282;ZNF238:0.35590460711;JUN:0.349451544471;DMAP1_NCOR{1,2}_SMARC:0.349302485212;GTF2I:0.344186303116;SP1:0.297569996932;ZNF384:0.292003337706;XBP1:0.284373933871;HMX1:0.2436941172;HNF4A_NR2F1,2:0.23847185036;ALX1:0.234402691845;PAX5:0.226382094609;ZFP161:0.20258500328;FOSL2:0.20058807087;RXRA_VDR{dimer}:0.184530874744;NFE2L2:0.123784563426;HMGA1,2:0.100889366495;ZNF148:0.1002359861;TEF:0.0867792229707;RBPJ:0.0676979977482;EP300:0.0673385880823;FOXA2:0.0669961028744;NANOG{mouse}:0.0562242851893;TAL1_TCF{3,4,12}:0.0483090244245;NFE2:0.0449240229532;PAX2:0.0359761414503;CEBPA,B_DDIT3:0.0315410125232;ZNF143:0.0294035069586;SOX{8,9,10}:0.0261638042258;HLF:0.0085376706691;BREu{core}:-0.0171651001091;PAX3,7:-0.0291010359768;ATF5_CREB3:-0.0348208735992;ZBTB6:-0.0381120171425;LHX3,4:-0.101125298696;ETS1,2:-0.155550906697;SOX17:-0.176995620099;NKX2-3_NKX2-5:-0.184125607147;ATF6:-0.190872537134;FOXN1:-0.192946746868;FOX{I1,J2}:-0.194954234649;NKX3-1:-0.204146809591;ZEB1:-0.215101761785;SPI1:-0.224703866598;CRX:-0.253605201899;IRF1,2:-0.275727666611;HNF1A:-0.294951463604;PRDM1:-0.324282524928;NFKB1_REL_RELA:-0.338895247863;STAT1,3:-0.361242915572;GZF1:-0.396132840642;HOX{A5,B5}:-0.43745760284;NFIL3:-0.448804981764;FOS_FOS{B,L1}_JUN{B,D}:-0.464467262692;SPIB:-0.467806277027;NRF1:-0.511474368602;BACH2:-0.589417966393;T:-0.649643162635;PITX1..3:-0.680436242592;ELF1,2,4:-0.685344922779;EBF1:-0.700607703341;GATA6:-0.706621817034;NANOG:-0.773405349523;HBP1_HMGB_SSRP1_UBTF:-0.785446293272;AHR_ARNT_ARNT2:-0.807705421297;PAX4:-0.812889197401;RUNX1..3:-0.818998441277;CREB1:-0.845375117909;TOPORS:-0.8544630775;NFY{A,B,C}:-0.862222990676;E2F1..5:-0.87025801861;TFDP1:-0.923697806177;HOXA9_MEIS1:-0.948638603929;FOXP1:-0.99315643176;PRRX1,2:-1.06973431544;CDC5L:-1.12493468093;OCT4_SOX2{dimer}:-1.14689585632;ONECUT1,2:-1.15688336308;XCPE1{core}:-1.24799380652;ADNP_IRX_SIX_ZHX:-1.25254288845;MYB:-1.25470719103;RFX1:-1.28115550972;GFI1:-1.315990732;SOX2:-1.32813318954;FOXD3:-1.39414290465;HIF1A:-1.44059983554;ELK1,4_GABP{A,B1}:-1.45562233041;VSX1,2:-1.61198434344;DBP:-1.71340317384;AIRE:-1.82489173902;POU5F1:-2.01468768523;POU2F1..3:-2.13134231287;PAX8:-2.35739812734
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10023-101D5;search_select_hide=table117:FF:10023-101D5
 }}

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FF:10023-101D5: Difference between revisions

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Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0