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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005248
|DRA_sample_Accession=CAGE@SAMD00005248
|accession_numbers=CAGE;DRX008036;DRR008908;DRZ000333;DRZ001718
|accession_numbers=CAGE;DRX008036;DRR008908;DRZ000333;DRZ001718;DRZ011683;DRZ013068
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg38.nobarcode.ctss.bed.gz
|id=FF:14308-155C6
|id=FF:14308-155C6
|is_a=EFO:0002091;;FF:0000667
|is_a=EFO:0002091;;FF:0000667
Line 46: Line 51:
|library_id=CNhs12399
|library_id=CNhs12399
|library_id_phase_based=2:CNhs12399
|library_id_phase_based=2:CNhs12399
|name="Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14308
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14308
|name=Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs12399,LSID914,release011,COMPLETED"
|profile_hcage=CNhs12399,LSID914,release011,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=",,,"
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.02362732466;NKX3-1:1.9661245678;EN1,2:1.80839746442;NKX3-2:1.74534668393;XBP1:1.72324107205;ALX4:1.72284306149;ZNF384:1.51784909382;KLF4:1.47514639421;GZF1:1.40902987494;HOX{A5,B5}:1.39868630168;HSF1,2:1.3942777101;TEAD1:1.36861309222;UFEwm:1.33913046235;NKX2-2,8:1.31891389118;ESR1:1.23104369248;ZNF238:1.22793343013;GFI1:1.13294261199;MYBL2:1.1205314549;RXRA_VDR{dimer}:1.06425495399;XCPE1{core}:1.05203863335;TOPORS:0.999177628055;SOX17:0.998983947446;HMGA1,2:0.954157060886;HIF1A:0.930041852333;HES1:0.909798576082;FOXL1:0.906768889218;TFDP1:0.872033415321;RXR{A,B,G}:0.867642373277;SRF:0.836552542399;GTF2A1,2:0.813157272724;GFI1B:0.812700077096;GTF2I:0.810083041659;GATA4:0.793829972739;E2F1..5:0.777442212533;EVI1:0.748048104083;MYB:0.746911339422;MZF1:0.741711081127;NR3C1:0.71461153537;MTE{core}:0.680679554053;AHR_ARNT_ARNT2:0.669194273153;TAL1_TCF{3,4,12}:0.652321327252;GCM1,2:0.618382603912;PRDM1:0.608906406772;TLX1..3_NFIC{dimer}:0.599185395707;ZIC1..3:0.597470668575;ELK1,4_GABP{A,B1}:0.574370916651;TP53:0.568744414169;GLI1..3:0.564344975473;NANOG{mouse}:0.494431311734;PAX8:0.474956308256;NFE2L1:0.470871899024;PAX3,7:0.450595227601;HOX{A4,D4}:0.430725485923;AIRE:0.426657204832;NRF1:0.417882293273;MAFB:0.393104128909;HMX1:0.386270569501;ZBTB6:0.383751327609;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.382749094737;ZNF143:0.366868628292;NFY{A,B,C}:0.361982512709;POU1F1:0.360435767517;STAT1,3:0.354637151321;BACH2:0.334077272922;TFAP2{A,C}:0.328821874319;SPZ1:0.328781090355;EBF1:0.327822796639;TFAP4:0.319659499655;MAZ:0.303607770804;SP1:0.299869020357;POU5F1:0.296517764709;MED-1{core}:0.279903130034;IKZF1:0.277484884259;FOS_FOS{B,L1}_JUN{B,D}:0.275311051272;YY1:0.266193558428;RFX1:0.254145779922;NFATC1..3:0.252302066782;DBP:0.247894930614;TFAP2B:0.217471502079;HLF:0.185346376955;TBP:0.147369271173;ALX1:0.140848743187;NFE2L2:0.135219298877;ATF6:0.126842559864;TEF:0.116669564676;CREB1:0.0557420847171;BPTF:0.0503056472259;NFE2:0.0411557305982;HOX{A6,A7,B6,B7}:0.0177366359447;EP300:0.0108387867238;ELF1,2,4:0.00431758096949;PAX1,9:-0.0172402110308;LEF1_TCF7_TCF7L1,2:-0.0302214847326;CRX:-0.0329504143859;MYFfamily:-0.0363117211436;SMAD1..7,9:-0.0391308410321;NKX2-1,4:-0.0399228854232;NHLH1,2:-0.0506505925919;CEBPA,B_DDIT3:-0.0564720621018;NR1H4:-0.0572369867845;CDC5L:-0.0584765939435;POU3F1..4:-0.0668810365765;HIC1:-0.0784496087156;SOX5:-0.0828434575045;ARID5B:-0.0834839698558;FOSL2:-0.0890007093172;ZNF148:-0.101572399669;ZNF423:-0.103910834868;PAX5:-0.117028808392;FOXP1:-0.118503981554;ZFP161:-0.125683889373;HAND1,2:-0.15353736581;EGR1..3:-0.15977062151;LHX3,4:-0.16531335706;FOXN1:-0.174965192989;TLX2:-0.195036732907;RREB1:-0.226547037037;FOXD3:-0.226909647476;ZBTB16:-0.233776932588;FOX{I1,J2}:-0.244554970089;PATZ1:-0.245253046259;TFCP2:-0.24532213002;RUNX1..3:-0.261630972128;PRRX1,2:-0.261715619116;IRF1,2:-0.268640099117;PPARG:-0.287644817515;bHLH_family:-0.288432999056;PAX2:-0.303710783935;AR:-0.317811863586;ATF5_CREB3:-0.318737061683;HNF1A:-0.319960536467;MEF2{A,B,C,D}:-0.352466243085;SREBF1,2:-0.368367894785;PDX1:-0.37618975982;SOX2:-0.386311655052;SOX{8,9,10}:-0.389962269122;SPI1:-0.393015089114;NFIX:-0.400286555701;TBX4,5:-0.427475583597;MTF1:-0.445628595836;NKX2-3_NKX2-5:-0.456375036966;HOXA9_MEIS1:-0.458343341261;SPIB:-0.471296769813;HNF4A_NR2F1,2:-0.475805807079;FOX{D1,D2}:-0.480009140526;NFIL3:-0.482078861139;ETS1,2:-0.486288918108;ADNP_IRX_SIX_ZHX:-0.516270402965;DMAP1_NCOR{1,2}_SMARC:-0.516541893452;ONECUT1,2:-0.528877310986;NANOG:-0.539772209238;NKX6-1,2:-0.54331693364;TGIF1:-0.545005301037;ATF4:-0.55031906081;STAT2,4,6:-0.552401473258;FOXO1,3,4:-0.555260087792;POU2F1..3:-0.567480699984;NFKB1_REL_RELA:-0.600380264071;STAT5{A,B}:-0.654951336728;POU6F1:-0.686290244923;IRF7:-0.721798645817;RBPJ:-0.756462156919;RFX2..5_RFXANK_RFXAP:-0.777031255016;REST:-0.796055974168;OCT4_SOX2{dimer}:-0.815820119046;BREu{core}:-0.822342151397;JUN:-0.824075831375;CUX2:-0.889581867269;PITX1..3:-0.890513359848;T:-0.902300016273;ATF2:-0.916973595677;NR6A1:-0.918418060265;PAX4:-0.920806036823;CDX1,2,4:-0.936754123136;FOXA2:-0.939659313094;GATA6:-0.989176987122;SNAI1..3:-0.999106471772;PAX6:-1.00368550548;FOXM1:-1.02095524466;PBX1:-1.03242824218;NR5A1,2:-1.07351049232;FOXQ1:-1.12329779589;ZEB1:-1.21407523771;FOXP3:-1.25878871319;VSX1,2:-1.3091163757;LMO2:-1.3263275507;MYOD1:-1.37374944805;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.51998164018;IKZF2:-1.54113233667;ESRRA:-1.64139519787;FOX{F1,F2,J1}:-1.69920757298;RORA:-2.1544203685
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.02362732466;NKX3-1:1.9661245678;EN1,2:1.80839746442;NKX3-2:1.74534668393;XBP1:1.72324107205;ALX4:1.72284306149;ZNF384:1.51784909382;KLF4:1.47514639421;GZF1:1.40902987494;HOX{A5,B5}:1.39868630168;HSF1,2:1.3942777101;TEAD1:1.36861309222;UFEwm:1.33913046235;NKX2-2,8:1.31891389118;ESR1:1.23104369248;ZNF238:1.22793343013;GFI1:1.13294261199;MYBL2:1.1205314549;RXRA_VDR{dimer}:1.06425495399;XCPE1{core}:1.05203863335;TOPORS:0.999177628055;SOX17:0.998983947446;HMGA1,2:0.954157060886;HIF1A:0.930041852333;HES1:0.909798576082;FOXL1:0.906768889218;TFDP1:0.872033415321;RXR{A,B,G}:0.867642373277;SRF:0.836552542399;GTF2A1,2:0.813157272724;GFI1B:0.812700077096;GTF2I:0.810083041659;GATA4:0.793829972739;E2F1..5:0.777442212533;EVI1:0.748048104083;MYB:0.746911339422;MZF1:0.741711081127;NR3C1:0.71461153537;MTE{core}:0.680679554053;AHR_ARNT_ARNT2:0.669194273153;TAL1_TCF{3,4,12}:0.652321327252;GCM1,2:0.618382603912;PRDM1:0.608906406772;TLX1..3_NFIC{dimer}:0.599185395707;ZIC1..3:0.597470668575;ELK1,4_GABP{A,B1}:0.574370916651;TP53:0.568744414169;GLI1..3:0.564344975473;NANOG{mouse}:0.494431311734;PAX8:0.474956308256;NFE2L1:0.470871899024;PAX3,7:0.450595227601;HOX{A4,D4}:0.430725485923;AIRE:0.426657204832;NRF1:0.417882293273;MAFB:0.393104128909;HMX1:0.386270569501;ZBTB6:0.383751327609;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.382749094737;ZNF143:0.366868628292;NFY{A,B,C}:0.361982512709;POU1F1:0.360435767517;STAT1,3:0.354637151321;BACH2:0.334077272922;TFAP2{A,C}:0.328821874319;SPZ1:0.328781090355;EBF1:0.327822796639;TFAP4:0.319659499655;MAZ:0.303607770804;SP1:0.299869020357;POU5F1:0.296517764709;MED-1{core}:0.279903130034;IKZF1:0.277484884259;FOS_FOS{B,L1}_JUN{B,D}:0.275311051272;YY1:0.266193558428;RFX1:0.254145779922;NFATC1..3:0.252302066782;DBP:0.247894930614;TFAP2B:0.217471502079;HLF:0.185346376955;TBP:0.147369271173;ALX1:0.140848743187;NFE2L2:0.135219298877;ATF6:0.126842559864;TEF:0.116669564676;CREB1:0.0557420847171;BPTF:0.0503056472259;NFE2:0.0411557305982;HOX{A6,A7,B6,B7}:0.0177366359447;EP300:0.0108387867238;ELF1,2,4:0.00431758096949;PAX1,9:-0.0172402110308;LEF1_TCF7_TCF7L1,2:-0.0302214847326;CRX:-0.0329504143859;MYFfamily:-0.0363117211436;SMAD1..7,9:-0.0391308410321;NKX2-1,4:-0.0399228854232;NHLH1,2:-0.0506505925919;CEBPA,B_DDIT3:-0.0564720621018;NR1H4:-0.0572369867845;CDC5L:-0.0584765939435;POU3F1..4:-0.0668810365765;HIC1:-0.0784496087156;SOX5:-0.0828434575045;ARID5B:-0.0834839698558;FOSL2:-0.0890007093172;ZNF148:-0.101572399669;ZNF423:-0.103910834868;PAX5:-0.117028808392;FOXP1:-0.118503981554;ZFP161:-0.125683889373;HAND1,2:-0.15353736581;EGR1..3:-0.15977062151;LHX3,4:-0.16531335706;FOXN1:-0.174965192989;TLX2:-0.195036732907;RREB1:-0.226547037037;FOXD3:-0.226909647476;ZBTB16:-0.233776932588;FOX{I1,J2}:-0.244554970089;PATZ1:-0.245253046259;TFCP2:-0.24532213002;RUNX1..3:-0.261630972128;PRRX1,2:-0.261715619116;IRF1,2:-0.268640099117;PPARG:-0.287644817515;bHLH_family:-0.288432999056;PAX2:-0.303710783935;AR:-0.317811863586;ATF5_CREB3:-0.318737061683;HNF1A:-0.319960536467;MEF2{A,B,C,D}:-0.352466243085;SREBF1,2:-0.368367894785;PDX1:-0.37618975982;SOX2:-0.386311655052;SOX{8,9,10}:-0.389962269122;SPI1:-0.393015089114;NFIX:-0.400286555701;TBX4,5:-0.427475583597;MTF1:-0.445628595836;NKX2-3_NKX2-5:-0.456375036966;HOXA9_MEIS1:-0.458343341261;SPIB:-0.471296769813;HNF4A_NR2F1,2:-0.475805807079;FOX{D1,D2}:-0.480009140526;NFIL3:-0.482078861139;ETS1,2:-0.486288918108;ADNP_IRX_SIX_ZHX:-0.516270402965;DMAP1_NCOR{1,2}_SMARC:-0.516541893452;ONECUT1,2:-0.528877310986;NANOG:-0.539772209238;NKX6-1,2:-0.54331693364;TGIF1:-0.545005301037;ATF4:-0.55031906081;STAT2,4,6:-0.552401473258;FOXO1,3,4:-0.555260087792;POU2F1..3:-0.567480699984;NFKB1_REL_RELA:-0.600380264071;STAT5{A,B}:-0.654951336728;POU6F1:-0.686290244923;IRF7:-0.721798645817;RBPJ:-0.756462156919;RFX2..5_RFXANK_RFXAP:-0.777031255016;REST:-0.796055974168;OCT4_SOX2{dimer}:-0.815820119046;BREu{core}:-0.822342151397;JUN:-0.824075831375;CUX2:-0.889581867269;PITX1..3:-0.890513359848;T:-0.902300016273;ATF2:-0.916973595677;NR6A1:-0.918418060265;PAX4:-0.920806036823;CDX1,2,4:-0.936754123136;FOXA2:-0.939659313094;GATA6:-0.989176987122;SNAI1..3:-0.999106471772;PAX6:-1.00368550548;FOXM1:-1.02095524466;PBX1:-1.03242824218;NR5A1,2:-1.07351049232;FOXQ1:-1.12329779589;ZEB1:-1.21407523771;FOXP3:-1.25878871319;VSX1,2:-1.3091163757;LMO2:-1.3263275507;MYOD1:-1.37374944805;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.51998164018;IKZF2:-1.54113233667;ESRRA:-1.64139519787;FOX{F1,F2,J1}:-1.69920757298;RORA:-2.1544203685
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14308-155C6;search_select_hide=table117:FF:14308-155C6
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12399
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age18 year old adult
cell typefibroblast
cell lineNA
companyCoriell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005248
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12399 CAGE DRX008036 DRR008908
Accession ID Hg19

Library idBAMCTSS
CNhs12399 DRZ000333 DRZ001718
Accession ID Hg38

Library idBAMCTSS
CNhs12399 DRZ011683 DRZ013068
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.223
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C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12399

Jaspar motifP-value
MA0002.20.0075
MA0003.10.703
MA0004.10.156
MA0006.10.45
MA0007.10.792
MA0009.10.48
MA0014.10.513
MA0017.10.00717
MA0018.20.0881
MA0019.10.967
MA0024.10.0426
MA0025.10.0668
MA0027.10.872
MA0028.10.3
MA0029.10.466
MA0030.10.0606
MA0031.10.0262
MA0035.21.98895e-4
MA0038.10.654
MA0039.20.73
MA0040.10.895
MA0041.10.86
MA0042.10.731
MA0043.10.00594
MA0046.10.181
MA0047.20.284
MA0048.18.9153e-4
MA0050.10.0233
MA0051.10.0899
MA0052.10.823
MA0055.10.0601
MA0057.10.621
MA0058.10.0574
MA0059.10.158
MA0060.10.44
MA0061.11.37934e-4
MA0062.20.893
MA0065.25.90397e-4
MA0066.10.41
MA0067.10.327
MA0068.10.225
MA0069.10.0957
MA0070.10.32
MA0071.10.0925
MA0072.10.0593
MA0073.10.881
MA0074.10.609
MA0076.10.0692
MA0077.10.315
MA0078.10.423
MA0079.20.377
MA0080.22.65832e-9
MA0081.10.0651
MA0083.10.018
MA0084.10.581
MA0087.10.28
MA0088.10.874
MA0090.10.00326
MA0091.10.288
MA0092.10.848
MA0093.10.211
MA0099.20.771
MA0100.10.212
MA0101.13.79866e-4
MA0102.20.211
MA0103.11.90116e-5
MA0104.29.41007e-4
MA0105.12.54593e-4
MA0106.10.558
MA0107.18.05747e-5
MA0108.20.204
MA0111.10.104
MA0112.20.751
MA0113.10.935
MA0114.10.0033
MA0115.10.162
MA0116.10.748
MA0117.10.916
MA0119.10.508
MA0122.10.272
MA0124.10.103
MA0125.10.462
MA0131.10.718
MA0135.10.828
MA0136.15.43477e-7
MA0137.20.413
MA0138.20.324
MA0139.10.301
MA0140.10.018
MA0141.10.0226
MA0142.10.00899
MA0143.10.469
MA0144.10.383
MA0145.10.61
MA0146.10.659
MA0147.10.0582
MA0148.10.0387
MA0149.10.528
MA0150.10.0491
MA0152.10.23
MA0153.10.903
MA0154.10.118
MA0155.10.619
MA0156.10.0987
MA0157.10.0778
MA0159.10.152
MA0160.10.00454
MA0162.10.141
MA0163.10.483
MA0164.10.715
MA0258.10.123
MA0259.10.387



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12399

Novel motifP-value
10.0988
100.63
1000.895
1010.193
1020.398
1030.136
1040.663
1050.437
1060.0238
1070.843
1080.963
1090.147
110.259
1100.714
1110.0678
1120.697
1130.0141
1140.111
1150.0819
1160.821
1170.504
1180.589
1190.105
120.812
1200.999
1210.555
1220.278
1230.00762
1240.099
1250.788
1260.234
1270.336
1280.012
1290.13
130.639
1300.432
1310.0969
1320.498
1330.858
1340.972
1350.843
1360.459
1370.759
1380.621
1390.0036
140.426
1400.273
1410.142
1420.913
1430.265
1440.941
1450.851
1460.271
1470.116
1480.0451
1490.398
150.0219
1500.345
1510.0805
1520.837
1530.446
1540.376
1550.0308
1560.291
1570.2
1580.0436
1590.993
160.936
1600.266
1610.14
1620.569
1630.745
1640.941
1650.235
1660.0803
1670.146
1680.878
1690.828
170.656
180.753
190.565
20.836
200.765
210.851
220.792
230.592
240.358
250.117
260.91
270.504
280.632
290.892
30.463
300.549
310.509
321.47759e-6
330.361
340.786
350.104
360.0461
370.665
380.348
390.887
40.44
400.118
410.378
420.254
430.295
440.365
450.396
460.344
470.179
480.504
490.0786
50.437
500.665
510.327
520.345
530.261
540.363
550.702
560.46
570.619
580.0986
590.304
60.905
600.106
610.32
620.0819
630.552
640.168
650.357
660.895
670.66
680.877
690.791
70.0736
700.0158
710.657
720.173
730.89
740.16
750.206
760.933
770.987
780.0315
790.217
80.226
800.321
810.386
820.246
830.2
840.552
850.228
860.903
870.828
880.735
890.358
90.919
900.0838
910.937
920.296
930.623
940.192
950.446
960.341
970.733
980.126
990.183



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12399


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)
0000406 (nuclear fraction sample)
0000667 (human Fibroblast - skin dystrophia myotonica, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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