FFCP PHASE1:Mm9::chr17:25570720..25570735,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:25570720..25570735,-
|short_description=p1@Cacna1h
|description=CAGE_peak_1_at_Cacna1h_5end
|association_with_transcript=0bp_to_ENSMUST00000068905,ENSMUST...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=58226 | |EntrezGene=58226 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q9JJ85,E9Q6P9,E0CYZ3,Q3UX23,O88427 | |UniProt=Q9JJ85,E9Q6P9,E0CYZ3,Q3UX23,O88427 | ||
|association_with_transcript=0bp_to_ENSMUST00000068905,ENSMUST00000078496,ENSMUST00000159048,ENSMUST00000159052,ENSMUST00000159610,NM_001163691,NM_021415,uc008bav.2,uc012ang.1_5end | |||
|cluster_id=chr17:25570720..25570735,- | |||
|description=CAGE_peak_1_at_Cacna1h_5end | |||
|id=chr17:25570720..25570735,- | |||
|ontology_enrichment_celltype=CL:0000540!6.74e-08!33;CL:0000047!6.74e-08!33;CL:0000031!6.74e-08!33;CL:0000404!6.74e-08!33;CL:0000117!8.03e-08!23;CL:0000337!8.03e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.11e-08,33;CL:0000047,5.11e-08,33;CL:0000031,5.11e-08,33;CL:0000404,5.11e-08,33;CL:0000117,6.12e-08,23;CL:0000337,6.12e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.25e-15!71;UBERON:0003075!6.25e-15!71;UBERON:0007284!6.25e-15!71;UBERON:0004121!1.16e-13!102;UBERON:0000924!1.16e-13!102;UBERON:0006601!1.16e-13!102;UBERON:0000468!2.17e-12!333;UBERON:0003056!1.99e-11!49;UBERON:0001017!5.28e-11!73;UBERON:0005743!5.28e-11!73;UBERON:0000073!5.74e-11!75;UBERON:0001016!5.74e-11!75;UBERON:0000033!3.28e-10!63;UBERON:0000922!5.67e-10!328;UBERON:0001049!7.10e-09!52;UBERON:0005068!7.10e-09!52;UBERON:0006241!7.10e-09!52;UBERON:0007135!7.10e-09!52;UBERON:0003080!2.96e-08!40;UBERON:0002780!5.87e-08!39;UBERON:0001890!5.87e-08!39;UBERON:0006240!5.87e-08!39;UBERON:0000955!5.99e-08!50;UBERON:0006238!5.99e-08!50;UBERON:0002616!1.88e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,2.76e-17,92;UBERON:0003056,1.30e-11,49;UBERON:0002346,1.77e-11,64;UBERON:0003075,1.77e-11,64;UBERON:0007284,1.77e-11,64;UBERON:0001017,3.51e-11,73;UBERON:0001016,3.82e-11,75;UBERON:0004121,4.35e-10,95;UBERON:0000924,4.35e-10,95;UBERON:0006601,4.35e-10,95;UBERON:0000073,2.42e-09,54;UBERON:0000922,3.22e-09,320;UBERON:0001049,5.17e-09,52;UBERON:0005068,5.17e-09,52;UBERON:0006241,5.17e-09,52;UBERON:0007135,5.17e-09,52;UBERON:0010371,1.08e-08,73;UBERON:0003080,2.21e-08,40;UBERON:0002780,4.45e-08,39;UBERON:0001890,4.45e-08,39;UBERON:0006240,4.45e-08,39;UBERON:0000955,1.11e-07,47;UBERON:0006238,1.11e-07,47;UBERON:0002616,3.52e-07,46 | |||
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| ||
|short_description=p1@Cacna1h | |||
}} | }} |
Latest revision as of 02:21, 26 September 2015
Short description: | p1@Cacna1h |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cacna1h_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000068905, ENSMUST00000078496, ENSMUST00000159048, ENSMUST00000159052, ENSMUST00000159610, NM_001163691, NM_021415, uc008bav.2, uc012ang.1_5end |
EntrezGene: | Cacna1h |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.11e-08 | 33 |
neuronal stem cell | 5.11e-08 | 33 |
neuroblast | 5.11e-08 | 33 |
electrically signaling cell | 5.11e-08 | 33 |
CNS neuron (sensu Vertebrata) | 6.12e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.12e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 2.76e-17 | 92 |
pre-chordal neural plate | 1.30e-11 | 49 |
neurectoderm | 1.77e-11 | 64 |
neural plate | 1.77e-11 | 64 |
presumptive neural plate | 1.77e-11 | 64 |
central nervous system | 3.51e-11 | 73 |
nervous system | 3.82e-11 | 75 |
ectoderm-derived structure | 4.35e-10 | 95 |
ectoderm | 4.35e-10 | 95 |
presumptive ectoderm | 4.35e-10 | 95 |
regional part of nervous system | 2.42e-09 | 54 |
embryo | 3.22e-09 | 320 |
neural tube | 5.17e-09 | 52 |
neural rod | 5.17e-09 | 52 |
future spinal cord | 5.17e-09 | 52 |
neural keel | 5.17e-09 | 52 |
ecto-epithelium | 1.08e-08 | 73 |
anterior neural tube | 2.21e-08 | 40 |
regional part of forebrain | 4.45e-08 | 39 |
forebrain | 4.45e-08 | 39 |
future forebrain | 4.45e-08 | 39 |
brain | 1.11e-07 | 47 |
future brain | 1.11e-07 | 47 |
regional part of brain | 3.52e-07 | 46 |