FF:10852-111F6: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	mesothelioma cell line:Mero-48a
Species:	Human (Homo sapiens)
Library ID:	CNhs13068
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	unknown
cell type	mesothelial cell
cell line	Mero-48a
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005350

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13068		CAGE		DRX007941		DRR008813

Accession ID Hg19

Library id		BAM		CTSS
CNhs13068		DRZ000238		DRZ001623

Accession ID Hg38

Library id		BAM		CTSS
CNhs13068		DRZ011588		DRZ012973

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.301
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.16
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.334
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.149
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0754
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.165
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0359
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0904
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.173
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0904
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.412
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.418
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.334
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0904
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13068

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00829
MA0003.1	MA0003.1	0.935
MA0004.1	MA0004.1	0.662
MA0006.1	MA0006.1	0.201
MA0007.1	MA0007.1	0.0875
MA0009.1	MA0009.1	0.587
MA0014.1	MA0014.1	0.914
MA0017.1	MA0017.1	0.967
MA0018.2	MA0018.2	4.65276e-4
MA0019.1	MA0019.1	0.858
MA0024.1	MA0024.1	0.395
MA0025.1	MA0025.1	0.00455
MA0027.1	MA0027.1	0.172
MA0028.1	MA0028.1	1.79114e-6
MA0029.1	MA0029.1	0.706
MA0030.1	MA0030.1	0.0138
MA0031.1	MA0031.1	0.0116
MA0035.2	MA0035.2	0.527
MA0038.1	MA0038.1	0.603
MA0039.2	MA0039.2	0.0366
MA0040.1	MA0040.1	0.444
MA0041.1	MA0041.1	0.529
MA0042.1	MA0042.1	0.711
MA0043.1	MA0043.1	3.98492e-7
MA0046.1	MA0046.1	0.122
MA0047.2	MA0047.2	0.00298
MA0048.1	MA0048.1	0.449
MA0050.1	MA0050.1	0.0404
MA0051.1	MA0051.1	0.627
MA0052.1	MA0052.1	7.77123e-5
MA0055.1	MA0055.1	0.176
MA0057.1	MA0057.1	0.0374
MA0058.1	MA0058.1	0.459
MA0059.1	MA0059.1	0.127
MA0060.1	MA0060.1	0.845
MA0061.1	MA0061.1	0.0151
MA0062.2	MA0062.2	1.3248e-5
MA0065.2	MA0065.2	0.77
MA0066.1	MA0066.1	0.658
MA0067.1	MA0067.1	0.00102
MA0068.1	MA0068.1	2.20101e-4
MA0069.1	MA0069.1	0.292
MA0070.1	MA0070.1	0.698
MA0071.1	MA0071.1	0.282
MA0072.1	MA0072.1	0.106
MA0073.1	MA0073.1	0.257
MA0074.1	MA0074.1	0.956
MA0076.1	MA0076.1	1.0573e-5
MA0077.1	MA0077.1	0.418
MA0078.1	MA0078.1	0.494
MA0079.2	MA0079.2	0.318
MA0080.2	MA0080.2	8.74823e-12
MA0081.1	MA0081.1	0.0698
MA0083.1	MA0083.1	0.189
MA0084.1	MA0084.1	0.499
MA0087.1	MA0087.1	0.549
MA0088.1	MA0088.1	0.388
MA0090.1	MA0090.1	2.16634e-5
MA0091.1	MA0091.1	0.161
MA0092.1	MA0092.1	0.89
MA0093.1	MA0093.1	0.715
MA0099.2	MA0099.2	0.00203
MA0100.1	MA0100.1	0.707
MA0101.1	MA0101.1	0.0324
MA0102.2	MA0102.2	3.77894e-8
MA0103.1	MA0103.1	0.264
MA0104.2	MA0104.2	0.589
MA0105.1	MA0105.1	0.0392
MA0106.1	MA0106.1	0.0266
MA0107.1	MA0107.1	0.00501
MA0108.2	MA0108.2	0.0152
MA0111.1	MA0111.1	0.77
MA0112.2	MA0112.2	0.537
MA0113.1	MA0113.1	0.603
MA0114.1	MA0114.1	0.744
MA0115.1	MA0115.1	0.0946
MA0116.1	MA0116.1	0.103
MA0117.1	MA0117.1	0.698
MA0119.1	MA0119.1	0.757
MA0122.1	MA0122.1	0.988
MA0124.1	MA0124.1	0.0386
MA0125.1	MA0125.1	0.372
MA0131.1	MA0131.1	0.215
MA0135.1	MA0135.1	0.0381
MA0136.1	MA0136.1	4.78903e-9
MA0137.2	MA0137.2	0.022
MA0138.2	MA0138.2	0.0968
MA0139.1	MA0139.1	0.616
MA0140.1	MA0140.1	0.627
MA0141.1	MA0141.1	0.257
MA0142.1	MA0142.1	0.442
MA0143.1	MA0143.1	0.283
MA0144.1	MA0144.1	0.0556
MA0145.1	MA0145.1	0.77
MA0146.1	MA0146.1	0.718
MA0147.1	MA0147.1	0.615
MA0148.1	MA0148.1	0.00703
MA0149.1	MA0149.1	0.436
MA0150.1	MA0150.1	0.959
MA0152.1	MA0152.1	0.985
MA0153.1	MA0153.1	0.0924
MA0154.1	MA0154.1	0.0383
MA0155.1	MA0155.1	0.177
MA0156.1	MA0156.1	0.171
MA0157.1	MA0157.1	0.195
MA0159.1	MA0159.1	0.366
MA0160.1	MA0160.1	0.118
MA0162.1	MA0162.1	0.139
MA0163.1	MA0163.1	0.818
MA0164.1	MA0164.1	0.509
MA0258.1	MA0258.1	0.211
MA0259.1	MA0259.1	0.329

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13068

Novel motif	Logo	P-value
1	1	0.924
10	10	0.474
100	100	0.836
101	101	0.194
102	102	0.648
103	103	0.447
104	104	0.306
105	105	0.0216
106	106	0.0685
107	107	0.746
108	108	0.847
109	109	0.744
11	11	0.823
110	110	0.966
111	111	0.567
112	112	0.519
113	113	0.0152
114	114	0.331
115	115	0.326
116	116	0.548
117	117	0.956
118	118	0.0646
119	119	0.62
12	12	0.694
120	120	0.0481
121	121	0.17
122	122	0.648
123	123	0.00645
124	124	0.0401
125	125	0.217
126	126	0.55
127	127	0.123
128	128	0.00783
129	129	0.372
13	13	0.577
130	130	0.565
131	131	0.149
132	132	0.762
133	133	0.908
134	134	0.243
135	135	0.0972
136	136	0.252
137	137	0.0484
138	138	0.419
139	139	0.184
14	14	0.439
140	140	0.313
141	141	0.0331
142	142	0.511
143	143	0.215
144	144	0.854
145	145	0.212
146	146	0.778
147	147	0.32
148	148	0.6
149	149	0.222
15	15	0.562
150	150	0.171
151	151	0.9
152	152	0.0811
153	153	0.768
154	154	0.304
155	155	0.0224
156	156	0.442
157	157	0.643
158	158	0.013
159	159	0.834
16	16	0.716
160	160	0.787
161	161	0.052
162	162	0.433
163	163	0.21
164	164	0.0268
165	165	0.398
166	166	0.603
167	167	0.783
168	168	0.913
169	169	0.362
17	17	0.355
18	18	0.458
19	19	0.807
2	2	0.767
20	20	0.307
21	21	0.0851
22	22	0.432
23	23	0.712
24	24	0.295
25	25	0.717
26	26	0.232
27	27	0.701
28	28	0.613
29	29	0.0215
3	3	0.595
30	30	0.684
31	31	0.568
32	32	0.0833
33	33	0.975
34	34	0.239
35	35	0.118
36	36	0.139
37	37	0.454
38	38	0.702
39	39	0.953
4	4	0.429
40	40	0.62
41	41	0.0749
42	42	0.858
43	43	0.0602
44	44	0.245
45	45	0.178
46	46	0.986
47	47	0.595
48	48	0.737
49	49	0.0565
5	5	0.205
50	50	0.781
51	51	0.673
52	52	0.347
53	53	0.236
54	54	0.599
55	55	0.153
56	56	0.874
57	57	0.378
58	58	0.338
59	59	0.794
6	6	0.642
60	60	0.151
61	61	0.43
62	62	0.741
63	63	0.408
64	64	0.546
65	65	0.278
66	66	0.251
67	67	0.933
68	68	0.539
69	69	0.282
7	7	0.302
70	70	0.832
71	71	0.778
72	72	0.597
73	73	0.0422
74	74	0.641
75	75	0.636
76	76	0.849
77	77	0.851
78	78	0.755
79	79	0.611
8	8	0.864
80	80	0.1
81	81	0.679
82	82	0.277
83	83	0.409
84	84	0.192
85	85	0.02
86	86	0.0352
87	87	0.189
88	88	0.601
89	89	0.836
9	9	0.146
90	90	0.295
91	91	0.748
92	92	0.452
93	93	0.415
94	94	0.773
95	95	0.674
96	96	0.977
97	97	0.996
98	98	0.0458
99	99	0.031

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13068

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10852-111F6
+|DRA_sample_Accession=CAGE@SAMD00005350
-|name=mesothelioma cell line:Mero-48a
+|accession_numbers=CAGE;DRX007941;DRR008813;DRZ000238;DRZ001623;DRZ011588;DRZ012973
-|sample_id=10852
-|rna_tube_id=111F6
-|rna_box=111
-|rna_position=F6
-|sample_cell_lot=
-|sample_cell_catalog=9100104
-|sample_company=ECACC
-|rna_lot_number=
-|rna_catalog_number=
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=
-|sample_tissue=mesothelium
-|sample_donor(cell lot)=
-|sample_sex=male
-|sample_age=unknown
-|sample_ethnicity=
-|rna_rin=
-|rna_od260/230=2.03
-|rna_od260/280=2.08
-|sample_cell_type=mesothelial cell
-|sample_cell_line=Mero-48a
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=mesothelioma
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
-|rna_weight_ug=85.4649
-|rna_concentration=0.94961
-|sample_note=
-|profile_hcage=CNhs13068,LSID1000,release012,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000077,CL:0000144,CL:0000213,CL:0000215,CL:0000220,CL:0000222,CL:0000255,CL:0000548,CL:0002321
 |ancestors_in_anatomy_facet=
-|ancestors_in_disease_facet=DOID:4,DOID:7
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
-|sample_description=
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
+|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.70!59.96!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.68!76.40!TFAP2A;;chr10:48355030..48355090,+!p1@ZNF488!1.40!31.02!ZNF488;;chr11:46299199..46299233,+!p1@CREB3L1!1.35!108.12!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!1.33!20.37!HOXA3;;chr8:37963466..37963506,+!p3@ASH2L!1.27!21.76!ASH2L;;chr17:46682321..46682362,-!p1@HOXB6!1.27!17.83!HOXB6;;chr15:83953397..83953425,-!p1@BNC1!1.22!18.06!BNC1;;chr18:19749386..19749404,+!p2@GATA6!1.19!20.84!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.19!14.59!HOXA5;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.46!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.12!12.27!HOXC5;;chr7:35293685..35293718,-!p1@TBX20!1.11!11.81!TBX20;;chr18:19749541..19749557,+!p1@GATA6!1.08!34.96!GATA6;;chr3:138665937..138665968,-!p1@FOXL2!1.08!11.11!FOXL2;;chr7:27170359..27170381,-!p1@HOXA4!1.07!10.88!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!1.07!10.65!HOXA5;;chr12:54332608..54332636,+!p1@HOXC13!1.03!9.72!HOXC13;;chr6:126240380..126240430,+!p2@NCOA7!1.02!25.00!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!1.02!11.58!NCOA7;;chr10:8096772..8096787,+!p2@GATA3!1.01!10.88!GATA3;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.26!TFAP2A;;chr3:138665969..138665993,-!p2@FOXL2!1.01!9.26!FOXL2;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.88!FOXF1;;chr5:142780189..142780223,-!p6@NR3C1!0.99!8.80!NR3C1;;chr12:54380404..54380433,+!p3@HOXC10!0.98!8.57!HOXC10;;chr5:142780237..142780261,-!p7@NR3C1!0.97!8.33!NR3C1;;chr5:172662197..172662216,-!p1@NKX2-5!0.97!8.33!NKX2-5;;chr7:19157248..19157268,-!p1@TWIST1!0.94!22.23!TWIST1;;chr6:10412576..10412599,-!p5@TFAP2A!0.94!7.64!TFAP2A;;chr7:27142290..27142310,-!p1@HOXA2!0.94!7.64!HOXA2;;chr15:80696703..80696754,+!p1@ARNT2!0.92!9.96!ARNT2;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.33!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!0.91!15.51!SOX15;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.80!TBX18;;chr9:35732647..35732678,+!p2@CREB3!0.89!39.36!CREB3;;chr8:37963407..37963454,+!p2@ASH2L!0.89!21.30!ASH2L;;chr17:46806067..46806097,-!p1@HOXB13!0.87!6.48!HOXB13;;chr17:46691732..46691766,-!p4@HOXB8!0.86!6.25!HOXB8;;chr5:2751762..2751784,-!p1@IRX2!0.86!6.25!IRX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.85!31.95!NFE2L3;;chr12:80084737..80084763,-!p3@PAWR!0.85!23.85!PAWR;;chr12:80084167..80084197,-!p5@PAWR!0.85!14.82!PAWR;;chr10:8096631..8096660,+!p1@GATA3!0.85!7.41!GATA3;;chr12:54332687..54332701,+!p3@HOXC13!0.85!6.02!HOXC13;;chrY:21906594..21906622,-!p1@KDM5D!0.85!6.02!KDM5D;;chr9:2158443..2158481,+!p2@SMARCA2!0.83!17.13!SMARCA2;;chr7:27169801..27169844,-!p2@HOXA4!0.83!5.79!HOXA4;;chr11:31832658..31832681,-!p1@PAX6!0.83!5.79!PAX6;;chr12:124873357..124873401,-!p1@NCOR2!0.82!69.69!NCOR2;;chr3:178789522..178789564,-!p2@ZMAT3!0.82!44.22!ZMAT3;;chr15:67357924..67357952,+!p2@SMAD3!0.82!39.59!SMAD3;;chr18:53068911..53068935,-!p4@TCF4!0.82!6.48!TCF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.56!CREB3L1;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr6:28321909..28321965,-!p3@ZNF323!0.80!5.33!ZNF323;;chr7:96654026..96654061,-!p2@DLX5!0.80!5.33!DLX5;;chr3:25470156..25470227,+!p2@RARB!0.80!5.33!RARB;;chr11:31832610..31832639,-!p5@PAX6!0.80!5.33!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.80!5.33!FOXG1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.78!48.39!PPP1R13L;;chr16:86612320..86612394,+!p1@FOXL1!0.78!5.09!FOXL1;;chr11:46299186..46299195,+!p3@CREB3L1!0.77!5.56!CREB3L1;;chr6:21597765..21597779,+!p2@SOX4!0.76!42.37!SOX4;;chr12:80084303..80084332,-!p1@PAWR!0.76!30.56!PAWR;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.18!HOXB7;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.10!MECOM;;chr7:27170274..27170308,-!p3@HOXA4!0.75!4.63!HOXA4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.63!HOXC5;;chr2:176969228..176969260,+!p1@HOXD11!0.73!4.40!HOXD11;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.40!KCNIP3;;chr6:28321971..28321995,-!p1@ZNF323!0.73!4.40!ZNF323;;chr7:27153428..27153440,-!p3@HOXA3!0.73!4.40!HOXA3;;chr5:321810..321877,+!p1@AHRR!0.71!14.35!AHRR;;chr17:46675558..46675577,-!p2@HOXB6!0.71!4.17!HOXB6;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.38!GLIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.70!11.11!TWIST1;;chr15:67418047..67418093,+!p4@SMAD3!0.69!5.09!SMAD3;;chr10:64134120..64134183,+!p1@ZNF365!0.69!4.86!ZNF365;;chr17:46675420..46675465,-!p3@HOXB6!0.69!4.63!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!0.69!3.94!LHX1;;chr17:40477163..40477183,-!p7@STAT3!0.69!3.94!STAT3;;chr17:46806098..46806118,-!p3@HOXB13!0.69!3.94!HOXB13;;chr12:54402745..54402788,+!p1@HOXC8!0.69!3.94!HOXC8;;chr8:67525443..67525459,-!p2@MYBL1!0.68!6.02!MYBL1;;chr1:151032782..151032801,+!p4@MLLT11!0.67!8.10!MLLT11;;chr3:25469724..25469773,+!p1@RARB!0.67!5.56!RARB;;chr17:46622440..46622477,-!p5@HOXB2!0.67!4.17!HOXB2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.70!ARNT2;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.70!HOXD8;;chr5:3595977..3595999,+!p1@IRX1!0.67!3.70!IRX1;;chr5:50679228..50679288,+!p1@ISL1!0.67!3.70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+|ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=FF:0102424
 |fonse_cell_line_closure=FF:0102424
@@ Line 66: / Line 40: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-48a.CNhs13068.10852-111F6.hg38.nobarcode.ctss.bed.gz
+|id=FF:10852-111F6
+|is_a=EFO:0002091;;FF:0000210;;FF:0102424
+|is_obsolete=
+|library_id=CNhs13068
+|library_id_phase_based=2:CNhs13068
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10852
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10852
+|name=mesothelioma cell line:Mero-48a
+|namespace=FANTOM5
+|part_of=
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+|profile_hcage=CNhs13068,LSID1000,release012,COMPLETED
+|profile_rnaseq=
+|profile_srnaseq=,,,
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+|rna_box=111
+|rna_catalog_number=
+|rna_concentration=0.94961
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
+|rna_lot_number=
+|rna_od260/230=2.03
+|rna_od260/280=2.08
+|rna_position=F6
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=111F6
+|rna_weight_ug=85.4649
+|sample_age=unknown
+|sample_category=cell lines
+|sample_cell_catalog=9100104
+|sample_cell_line=Mero-48a
+|sample_cell_lot=
+|sample_cell_type=mesothelial cell
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=ECACC
+|sample_description=
+|sample_dev_stage=
+|sample_disease=mesothelioma
+|sample_donor(cell lot)=
+|sample_ethnicity=
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.40431460256593e-263!GO:0043226;organelle;2.98362578813038e-209!GO:0043229;intracellular organelle;8.82340980478101e-209!GO:0005737;cytoplasm;2.01290388506233e-204!GO:0043231;intracellular membrane-bound organelle;1.54474246617424e-203!GO:0043227;membrane-bound organelle;2.28403570512087e-203!GO:0044422;organelle part;5.87766164710891e-151!GO:0044446;intracellular organelle part;6.63052846585555e-150!GO:0044444;cytoplasmic part;3.30929378890102e-142!GO:0032991;macromolecular complex;1.61172386579591e-106!GO:0030529;ribonucleoprotein complex;3.29960439121437e-92!GO:0044237;cellular metabolic process;1.54303556797829e-88!GO:0044238;primary metabolic process;4.87487773809107e-88!GO:0043170;macromolecule metabolic process;3.21836343998908e-83!GO:0005634;nucleus;4.43887808093026e-80!GO:0005515;protein binding;6.26825797892689e-77!GO:0003723;RNA binding;1.66303068974095e-75!GO:0043233;organelle lumen;2.12235891042983e-74!GO:0031974;membrane-enclosed lumen;2.12235891042983e-74!GO:0044428;nuclear part;3.02366616871055e-73!GO:0005739;mitochondrion;3.35736171318491e-72!GO:0005840;ribosome;2.32356882836452e-57!GO:0016043;cellular component organization and biogenesis;1.0727408686806e-56!GO:0006412;translation;1.43031799234875e-56!GO:0043234;protein complex;1.59242021899628e-53!GO:0019538;protein metabolic process;1.47482888875227e-52!GO:0031090;organelle membrane;2.80367262124797e-52!GO:0003735;structural constituent of ribosome;2.39173887300618e-50!GO:0006396;RNA processing;2.54751170517105e-49!GO:0033036;macromolecule localization;1.63851532907294e-48!GO:0044429;mitochondrial part;9.00629350281071e-48!GO:0015031;protein transport;2.36570302797487e-47!GO:0043283;biopolymer metabolic process;4.43069453570747e-47!GO:0044260;cellular macromolecule metabolic process;5.86487929519196e-46!GO:0044267;cellular protein metabolic process;1.44474775373558e-45!GO:0031981;nuclear lumen;6.78655489593538e-45!GO:0008104;protein localization;1.4680508855511e-44!GO:0045184;establishment of protein localization;7.3742434198221e-44!GO:0009058;biosynthetic process;8.65654717316472e-44!GO:0010467;gene expression;8.67932980780366e-43!GO:0005829;cytosol;8.67932980780366e-43!GO:0009059;macromolecule biosynthetic process;1.5424772016857e-42!GO:0033279;ribosomal subunit;1.81801740793804e-42!GO:0044249;cellular biosynthetic process;8.3613434359275e-42!GO:0031967;organelle envelope;1.05103656429901e-41!GO:0031975;envelope;2.72665061030006e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.30055654236987e-39!GO:0043228;non-membrane-bound organelle;2.24497774014141e-39!GO:0043232;intracellular non-membrane-bound organelle;2.24497774014141e-39!GO:0046907;intracellular transport;9.18943674877665e-39!GO:0016071;mRNA metabolic process;3.37295630448413e-37!GO:0006996;organelle organization and biogenesis;1.83716484917057e-36!GO:0065003;macromolecular complex assembly;7.14600500136764e-36!GO:0008380;RNA splicing;1.04467075835453e-34!GO:0006397;mRNA processing;2.57791424265383e-33!GO:0022607;cellular component assembly;5.77961746377108e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.92089604142964e-32!GO:0006886;intracellular protein transport;8.40479860020496e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.29532815122073e-31!GO:0005740;mitochondrial envelope;2.17276872681091e-30!GO:0031966;mitochondrial membrane;1.60241164008937e-28!GO:0019866;organelle inner membrane;4.26583765284684e-28!GO:0006259;DNA metabolic process;1.20849779052312e-27!GO:0005654;nucleoplasm;2.04993703897638e-26!GO:0005743;mitochondrial inner membrane;2.28163873780922e-26!GO:0051649;establishment of cellular localization;3.25859104299647e-26!GO:0051641;cellular localization;5.05110159994125e-26!GO:0044445;cytosolic part;9.46801387552149e-26!GO:0000166;nucleotide binding;1.78811761986845e-25!GO:0003676;nucleic acid binding;3.65223305446391e-25!GO:0005681;spliceosome;1.262988679947e-24!GO:0006119;oxidative phosphorylation;3.17694557332504e-23!GO:0007049;cell cycle;2.82245153758749e-22!GO:0015934;large ribosomal subunit;3.26338832824676e-22!GO:0016874;ligase activity;5.70170343817956e-22!GO:0015935;small ribosomal subunit;2.7810327271411e-21!GO:0012505;endomembrane system;3.14226690926323e-21!GO:0044451;nucleoplasm part;5.34912948804167e-21!GO:0005730;nucleolus;1.06882032423095e-20!GO:0031980;mitochondrial lumen;2.08795263855426e-20!GO:0005759;mitochondrial matrix;2.08795263855426e-20!GO:0016462;pyrophosphatase activity;2.65802861910529e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.53509207240796e-20!GO:0044455;mitochondrial membrane part;3.71887969450952e-20!GO:0005783;endoplasmic reticulum;4.72499905834357e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;4.91046982969332e-20!GO:0006457;protein folding;5.0870443077591e-20!GO:0017111;nucleoside-triphosphatase activity;2.10137690550116e-19!GO:0006512;ubiquitin cycle;1.79389389649278e-18!GO:0022618;protein-RNA complex assembly;2.65920476552591e-18!GO:0016070;RNA metabolic process;1.35849189768223e-17!GO:0032553;ribonucleotide binding;1.38308261195168e-17!GO:0032555;purine ribonucleotide binding;1.38308261195168e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.96889899079547e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.56201877749997e-17!GO:0017076;purine nucleotide binding;2.80391207609054e-17!GO:0048770;pigment granule;2.80391207609054e-17!GO:0042470;melanosome;2.80391207609054e-17!GO:0022402;cell cycle process;3.66029925187915e-17!GO:0005746;mitochondrial respiratory chain;5.45547875882257e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.88858375128115e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.21940229510575e-16!GO:0044432;endoplasmic reticulum part;5.10812331337531e-16!GO:0019941;modification-dependent protein catabolic process;5.22320650358236e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.22320650358236e-16!GO:0043285;biopolymer catabolic process;5.73915184982302e-16!GO:0050136;NADH dehydrogenase (quinone) activity;5.97109161268567e-16!GO:0003954;NADH dehydrogenase activity;5.97109161268567e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.97109161268567e-16!GO:0000278;mitotic cell cycle;5.99738739758028e-16!GO:0044257;cellular protein catabolic process;9.0969117056269e-16!GO:0048193;Golgi vesicle transport;9.36094609331276e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.03717130811249e-15!GO:0044265;cellular macromolecule catabolic process;1.22829754516034e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.48024878032222e-15!GO:0008134;transcription factor binding;1.67438474049424e-15!GO:0005761;mitochondrial ribosome;1.99519424347984e-15!GO:0000313;organellar ribosome;1.99519424347984e-15!GO:0005794;Golgi apparatus;2.35914110153287e-15!GO:0016192;vesicle-mediated transport;2.76180695734284e-15!GO:0005524;ATP binding;3.36583655870699e-15!GO:0051186;cofactor metabolic process;3.94289418074266e-15!GO:0006974;response to DNA damage stimulus;4.14512802096741e-15!GO:0032559;adenyl ribonucleotide binding;4.44401626614683e-15!GO:0008135;translation factor activity, nucleic acid binding;9.76658895711768e-15!GO:0042254;ribosome biogenesis and assembly;1.07254702124351e-14!GO:0030554;adenyl nucleotide binding;1.35646299490082e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.77031331592574e-14!GO:0051082;unfolded protein binding;3.19182500326688e-14!GO:0006605;protein targeting;3.73314730178509e-14!GO:0009057;macromolecule catabolic process;3.85249435467253e-14!GO:0030163;protein catabolic process;3.87960456696276e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.24453285872626e-14!GO:0042773;ATP synthesis coupled electron transport;4.24453285872626e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;4.54604037965831e-14!GO:0000375;RNA splicing, via transesterification reactions;4.54604037965831e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.54604037965831e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.68384728139144e-14!GO:0045271;respiratory chain complex I;6.68384728139144e-14!GO:0005747;mitochondrial respiratory chain complex I;6.68384728139144e-14!GO:0043412;biopolymer modification;1.21584938845321e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.77820296516586e-13!GO:0005694;chromosome;1.88508496217335e-13!GO:0012501;programmed cell death;4.41967089348973e-13!GO:0006915;apoptosis;7.2151482609611e-13!GO:0009055;electron carrier activity;7.49859837116272e-13!GO:0044248;cellular catabolic process;9.42515664323845e-13!GO:0051276;chromosome organization and biogenesis;1.79072704407882e-12!GO:0042623;ATPase activity, coupled;2.71819343175741e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.72002537122548e-12!GO:0000087;M phase of mitotic cell cycle;3.17598722905253e-12!GO:0006464;protein modification process;3.72666887718531e-12!GO:0006281;DNA repair;4.18487888004728e-12!GO:0044427;chromosomal part;4.23667059664688e-12!GO:0016887;ATPase activity;4.44843110744347e-12!GO:0007067;mitosis;5.15183701502098e-12!GO:0006399;tRNA metabolic process;5.38387880189989e-12!GO:0005635;nuclear envelope;6.25282725021792e-12!GO:0008639;small protein conjugating enzyme activity;7.22022161405322e-12!GO:0044453;nuclear membrane part;7.4886894408624e-12!GO:0005789;endoplasmic reticulum membrane;8.06225441123863e-12!GO:0031965;nuclear membrane;1.08997068231332e-11!GO:0003743;translation initiation factor activity;1.14879880601979e-11!GO:0008219;cell death;1.46298294250698e-11!GO:0016265;death;1.46298294250698e-11!GO:0051301;cell division;1.4881441323315e-11!GO:0004842;ubiquitin-protein ligase activity;1.64007159634792e-11!GO:0006461;protein complex assembly;1.64007159634792e-11!GO:0009259;ribonucleotide metabolic process;1.79436701688707e-11!GO:0006413;translational initiation;2.37217748912683e-11!GO:0006732;coenzyme metabolic process;2.39614799077933e-11!GO:0022403;cell cycle phase;2.99285169324348e-11!GO:0006260;DNA replication;6.33813822751918e-11!GO:0019787;small conjugating protein ligase activity;6.34047156721554e-11!GO:0005793;ER-Golgi intermediate compartment;9.64716379729506e-11!GO:0004386;helicase activity;9.74055025500154e-11!GO:0009719;response to endogenous stimulus;1.27827338631155e-10!GO:0003712;transcription cofactor activity;1.40449413832244e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.54781616940108e-10!GO:0043687;post-translational protein modification;1.61031611654384e-10!GO:0006163;purine nucleotide metabolic process;1.72121066780447e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74570050303846e-10!GO:0009150;purine ribonucleotide metabolic process;2.36121926597645e-10!GO:0006913;nucleocytoplasmic transport;2.44121415032033e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.57262681629377e-10!GO:0009260;ribonucleotide biosynthetic process;2.58474074440063e-10!GO:0008026;ATP-dependent helicase activity;4.2058740708985e-10!GO:0006446;regulation of translational initiation;4.71906885243949e-10!GO:0051169;nuclear transport;5.28369643895551e-10!GO:0006323;DNA packaging;5.28369643895551e-10!GO:0005643;nuclear pore;6.19332420505889e-10!GO:0006364;rRNA processing;7.85586614327163e-10!GO:0006164;purine nucleotide biosynthetic process;7.9268650912937e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.30558363789101e-10!GO:0004812;aminoacyl-tRNA ligase activity;9.30558363789101e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.30558363789101e-10!GO:0016604;nuclear body;9.59814567633666e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.03142449323352e-09!GO:0016072;rRNA metabolic process;1.10440897715815e-09!GO:0065002;intracellular protein transport across a membrane;1.14971312481797e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.70666105455797e-09!GO:0043067;regulation of programmed cell death;1.83559582334932e-09!GO:0016881;acid-amino acid ligase activity;2.17835031436533e-09!GO:0043038;amino acid activation;2.25653212474392e-09!GO:0006418;tRNA aminoacylation for protein translation;2.25653212474392e-09!GO:0043039;tRNA aminoacylation;2.25653212474392e-09!GO:0042981;regulation of apoptosis;2.37799980798618e-09!GO:0008565;protein transporter activity;2.59825469685597e-09!GO:0051726;regulation of cell cycle;2.96418044363709e-09!GO:0009141;nucleoside triphosphate metabolic process;3.05057473414855e-09!GO:0000074;regulation of progression through cell cycle;3.38464172160044e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.61326528736312e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.61326528736312e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.33913946553525e-09!GO:0050657;nucleic acid transport;4.88070927414149e-09!GO:0051236;establishment of RNA localization;4.88070927414149e-09!GO:0050658;RNA transport;4.88070927414149e-09!GO:0006403;RNA localization;5.15713105277822e-09!GO:0000279;M phase;5.18707357315215e-09!GO:0065004;protein-DNA complex assembly;6.75739688621513e-09!GO:0006366;transcription from RNA polymerase II promoter;6.9561449427315e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.61127349991886e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.33175145999124e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.33175145999124e-08!GO:0005768;endosome;1.5623369519243e-08!GO:0006333;chromatin assembly or disassembly;1.67765366633873e-08!GO:0015986;ATP synthesis coupled proton transport;1.69169392751004e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.69169392751004e-08!GO:0051188;cofactor biosynthetic process;1.91246025100158e-08!GO:0046930;pore complex;2.33133121051238e-08!GO:0009060;aerobic respiration;2.56330086401113e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.90201568091449e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.90201568091449e-08!GO:0015630;microtubule cytoskeleton;3.39773473032153e-08!GO:0048475;coated membrane;3.60061181737327e-08!GO:0030117;membrane coat;3.60061181737327e-08!GO:0030120;vesicle coat;3.61218447810379e-08!GO:0030662;coated vesicle membrane;3.61218447810379e-08!GO:0046034;ATP metabolic process;4.31505689412881e-08!GO:0000785;chromatin;6.97011314060759e-08!GO:0050794;regulation of cellular process;7.08352716922254e-08!GO:0009056;catabolic process;8.80750913278762e-08!GO:0048523;negative regulation of cellular process;9.45545005282132e-08!GO:0017038;protein import;9.60879165571862e-08!GO:0051246;regulation of protein metabolic process;1.00815852843908e-07!GO:0007005;mitochondrion organization and biogenesis;1.27622210923258e-07!GO:0019829;cation-transporting ATPase activity;1.2925562850902e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.31913416531736e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.56855342029127e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.62693834741093e-07!GO:0051028;mRNA transport;2.20683695886562e-07!GO:0016607;nuclear speck;2.60222558072049e-07!GO:0006754;ATP biosynthetic process;3.13526034379414e-07!GO:0006753;nucleoside phosphate metabolic process;3.13526034379414e-07!GO:0045333;cellular respiration;3.20123491992335e-07!GO:0032446;protein modification by small protein conjugation;3.32159249714434e-07!GO:0016567;protein ubiquitination;3.83474846021515e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.48286762225458e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.75114748593853e-07!GO:0003697;single-stranded DNA binding;5.81028029832019e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.25806824975202e-07!GO:0043069;negative regulation of programmed cell death;6.9549385537854e-07!GO:0000151;ubiquitin ligase complex;7.74376734485861e-07!GO:0043623;cellular protein complex assembly;8.76013585275081e-07!GO:0016491;oxidoreductase activity;9.07090067944441e-07!GO:0005667;transcription factor complex;9.33944930019309e-07!GO:0016779;nucleotidyltransferase activity;1.07636540218701e-06!GO:0000245;spliceosome assembly;1.09151600891253e-06!GO:0004298;threonine endopeptidase activity;1.1155038094781e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.19507743594509e-06!GO:0006334;nucleosome assembly;1.23173459186586e-06!GO:0006099;tricarboxylic acid cycle;1.26937325911547e-06!GO:0046356;acetyl-CoA catabolic process;1.26937325911547e-06!GO:0043066;negative regulation of apoptosis;1.51686088025538e-06!GO:0009108;coenzyme biosynthetic process;1.59782140737822e-06!GO:0044431;Golgi apparatus part;1.61830155145636e-06!GO:0009117;nucleotide metabolic process;1.85332170515508e-06!GO:0045259;proton-transporting ATP synthase complex;1.91428077136178e-06!GO:0006916;anti-apoptosis;2.05802695026497e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.13979784497389e-06!GO:0048519;negative regulation of biological process;2.51734199808289e-06!GO:0006084;acetyl-CoA metabolic process;2.96959905617751e-06!GO:0003924;GTPase activity;3.08595007341256e-06!GO:0031497;chromatin assembly;3.41460924622494e-06!GO:0043566;structure-specific DNA binding;3.56004421706088e-06!GO:0016568;chromatin modification;4.86107462675419e-06!GO:0005762;mitochondrial large ribosomal subunit;5.87982809803859e-06!GO:0000315;organellar large ribosomal subunit;5.87982809803859e-06!GO:0003724;RNA helicase activity;6.31208769350863e-06!GO:0031988;membrane-bound vesicle;7.40900019051474e-06!GO:0016023;cytoplasmic membrane-bound vesicle;7.54062336470091e-06!GO:0044440;endosomal part;7.96454067257974e-06!GO:0010008;endosome membrane;7.96454067257974e-06!GO:0016740;transferase activity;9.10631481741245e-06!GO:0005788;endoplasmic reticulum lumen;9.38452681579212e-06!GO:0005798;Golgi-associated vesicle;9.92158714731938e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.12118950231012e-05!GO:0005819;spindle;1.24775872576082e-05!GO:0003713;transcription coactivator activity;1.31726694208893e-05!GO:0008654;phospholipid biosynthetic process;1.36781456489534e-05!GO:0005773;vacuole;1.61955241600163e-05!GO:0009109;coenzyme catabolic process;1.69842195487857e-05!GO:0006752;group transfer coenzyme metabolic process;1.71826898304047e-05!GO:0031252;leading edge;1.74522727321982e-05!GO:0051187;cofactor catabolic process;1.77809252260631e-05!GO:0016853;isomerase activity;1.83013454974394e-05!GO:0031982;vesicle;1.90482135918714e-05!GO:0016564;transcription repressor activity;2.11032314115644e-05!GO:0006793;phosphorus metabolic process;2.27723395322745e-05!GO:0006796;phosphate metabolic process;2.27723395322745e-05!GO:0003714;transcription corepressor activity;2.40135038001805e-05!GO:0031410;cytoplasmic vesicle;2.40240547226253e-05!GO:0016563;transcription activator activity;2.41752106503046e-05!GO:0005769;early endosome;2.46126828218171e-05!GO:0051789;response to protein stimulus;2.52655011797936e-05!GO:0006986;response to unfolded protein;2.52655011797936e-05!GO:0006613;cotranslational protein targeting to membrane;2.56139857280149e-05!GO:0005813;centrosome;2.62371248245117e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.65369504642718e-05!GO:0007010;cytoskeleton organization and biogenesis;2.87532897943009e-05!GO:0030867;rough endoplasmic reticulum membrane;2.9442232164481e-05!GO:0045786;negative regulation of progression through cell cycle;3.1504497567301e-05!GO:0016787;hydrolase activity;3.33435933539598e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.42504211328941e-05!GO:0051427;hormone receptor binding;3.67174034330373e-05!GO:0051170;nuclear import;3.88579752824624e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.15563476022078e-05!GO:0051168;nuclear export;4.87903038116742e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.13761328712302e-05!GO:0016310;phosphorylation;5.99873842188066e-05!GO:0006091;generation of precursor metabolites and energy;6.11123434593913e-05!GO:0043021;ribonucleoprotein binding;6.16498147542285e-05!GO:0005815;microtubule organizing center;6.27198050753334e-05!GO:0000139;Golgi membrane;6.53355275684368e-05!GO:0006606;protein import into nucleus;8.17672304635417e-05!GO:0035257;nuclear hormone receptor binding;8.30394308437186e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.98031220026196e-05!GO:0005770;late endosome;0.000104136698932112!GO:0005905;coated pit;0.000107411739094489!GO:0005525;GTP binding;0.000110118258316925!GO:0019843;rRNA binding;0.000136710199637028!GO:0008186;RNA-dependent ATPase activity;0.00014086355731424!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000147703774412235!GO:0000314;organellar small ribosomal subunit;0.000150493184755407!GO:0005763;mitochondrial small ribosomal subunit;0.000150493184755407!GO:0050789;regulation of biological process;0.000154463640603648!GO:0016859;cis-trans isomerase activity;0.000159373766979379!GO:0006414;translational elongation;0.000171046686252416!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000175217054112747!GO:0003899;DNA-directed RNA polymerase activity;0.000192936066176366!GO:0030036;actin cytoskeleton organization and biogenesis;0.0001990234570086!GO:0033116;ER-Golgi intermediate compartment membrane;0.000216093008484452!GO:0019899;enzyme binding;0.000225396982365463!GO:0045454;cell redox homeostasis;0.000231053915849196!GO:0005885;Arp2/3 protein complex;0.000241000048429568!GO:0046489;phosphoinositide biosynthetic process;0.000246776875054433!GO:0000323;lytic vacuole;0.000246776875054433!GO:0005764;lysosome;0.000246776875054433!GO:0015980;energy derivation by oxidation of organic compounds;0.000248808738149781!GO:0007051;spindle organization and biogenesis;0.000268155351139447!GO:0006612;protein targeting to membrane;0.000271886637700395!GO:0051329;interphase of mitotic cell cycle;0.000305154346650191!GO:0030663;COPI coated vesicle membrane;0.000321278848776524!GO:0030126;COPI vesicle coat;0.000321278848776524!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000324469363962289!GO:0031968;organelle outer membrane;0.000326730016081842!GO:0046474;glycerophospholipid biosynthetic process;0.000339765938168273!GO:0019867;outer membrane;0.000347482541987316!GO:0030133;transport vesicle;0.000348969183414597!GO:0032561;guanyl ribonucleotide binding;0.000355153288844211!GO:0019001;guanyl nucleotide binding;0.000355153288844211!GO:0008033;tRNA processing;0.000357017462439294!GO:0051325;interphase;0.000376601288470268!GO:0004004;ATP-dependent RNA helicase activity;0.000398089160032635!GO:0044452;nucleolar part;0.000405386743813694!GO:0031324;negative regulation of cellular metabolic process;0.000421775005103493!GO:0005048;signal sequence binding;0.000434676487545158!GO:0008092;cytoskeletal protein binding;0.000484340168694859!GO:0000775;chromosome, pericentric region;0.00050186245975331!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000504052907993134!GO:0048471;perinuclear region of cytoplasm;0.000532692267920617!GO:0003729;mRNA binding;0.000549236418240387!GO:0051252;regulation of RNA metabolic process;0.000576052148198418!GO:0043284;biopolymer biosynthetic process;0.000588211144589915!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000669826674915137!GO:0019222;regulation of metabolic process;0.000687515287149399!GO:0003682;chromatin binding;0.000699846416772349!GO:0043681;protein import into mitochondrion;0.000705287046258928!GO:0008250;oligosaccharyl transferase complex;0.000740388406051625!GO:0030137;COPI-coated vesicle;0.000754068655653972!GO:0005874;microtubule;0.000756910372412013!GO:0006891;intra-Golgi vesicle-mediated transport;0.000778379192058174!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000780803295260651!GO:0016363;nuclear matrix;0.000837233062277816!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000837618603419454!GO:0015399;primary active transmembrane transporter activity;0.000837618603419454!GO:0006261;DNA-dependent DNA replication;0.000882491174260535!GO:0051920;peroxiredoxin activity;0.000905509273185367!GO:0006497;protein amino acid lipidation;0.000928918304794612!GO:0005741;mitochondrial outer membrane;0.000928918304794612!GO:0006626;protein targeting to mitochondrion;0.00100500202539092!GO:0016044;membrane organization and biogenesis;0.00110045318290207!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00114027472270671!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00114027472270671!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00114027472270671!GO:0006383;transcription from RNA polymerase III promoter;0.0012272228439044!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00123452895841119!GO:0048522;positive regulation of cellular process;0.0013604663967004!GO:0006839;mitochondrial transport;0.00138285101433498!GO:0042802;identical protein binding;0.00140084890301478!GO:0009165;nucleotide biosynthetic process;0.00149024631052681!GO:0007243;protein kinase cascade;0.00149308891176391!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00149308891176391!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00155725415751846!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00164153354436149!GO:0043065;positive regulation of apoptosis;0.00164153354436149!GO:0045045;secretory pathway;0.00172227633582381!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00173613708604409!GO:0009892;negative regulation of metabolic process;0.00178676456347079!GO:0008632;apoptotic program;0.00181161283356153!GO:0046467;membrane lipid biosynthetic process;0.00186213918728882!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0018734469704113!GO:0043068;positive regulation of programmed cell death;0.00191996625434636!GO:0008361;regulation of cell size;0.00195567851471755!GO:0001726;ruffle;0.00200510630858875!GO:0030659;cytoplasmic vesicle membrane;0.00203804332156574!GO:0030029;actin filament-based process;0.00203804332156574!GO:0008022;protein C-terminus binding;0.00231073798937447!GO:0016049;cell growth;0.00238920934372883!GO:0001558;regulation of cell growth;0.0024083903281458!GO:0004576;oligosaccharyl transferase activity;0.00242414104320884!GO:0015992;proton transport;0.00242414104320884!GO:0008094;DNA-dependent ATPase activity;0.00254784504902249!GO:0006818;hydrogen transport;0.00254784504902249!GO:0030176;integral to endoplasmic reticulum membrane;0.00259320381720518!GO:0030658;transport vesicle membrane;0.00262920514619246!GO:0000059;protein import into nucleus, docking;0.00272084188557784!GO:0030118;clathrin coat;0.00282309234177452!GO:0018196;peptidyl-asparagine modification;0.00289386857410191!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00289386857410191!GO:0005657;replication fork;0.00301870901413983!GO:0006402;mRNA catabolic process;0.00307723851534521!GO:0046483;heterocycle metabolic process;0.00312422227984518!GO:0016272;prefoldin complex;0.00312422227984518!GO:0031072;heat shock protein binding;0.00314217861397387!GO:0016197;endosome transport;0.00315162016411375!GO:0030132;clathrin coat of coated pit;0.00315925325445044!GO:0016481;negative regulation of transcription;0.00329990574567971!GO:0005684;U2-dependent spliceosome;0.00331417532005324!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00333531934009716!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00333531934009716!GO:0000786;nucleosome;0.00346910552679175!GO:0030134;ER to Golgi transport vesicle;0.00349664955046705!GO:0006506;GPI anchor biosynthetic process;0.00351730751526449!GO:0042158;lipoprotein biosynthetic process;0.00375458576761718!GO:0007006;mitochondrial membrane organization and biogenesis;0.00382996703186032!GO:0003690;double-stranded DNA binding;0.00394182157121904!GO:0016126;sterol biosynthetic process;0.00395197143630736!GO:0006302;double-strand break repair;0.00409967951266347!GO:0048487;beta-tubulin binding;0.00430437521242206!GO:0048500;signal recognition particle;0.00430437521242206!GO:0006401;RNA catabolic process;0.00436531217123536!GO:0005791;rough endoplasmic reticulum;0.00441224916379101!GO:0017166;vinculin binding;0.00454887101299712!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00454887101299712!GO:0051087;chaperone binding;0.00506550488302048!GO:0008180;signalosome;0.0051139299195648!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00512626093622794!GO:0030880;RNA polymerase complex;0.00524565391147475!GO:0003711;transcription elongation regulator activity;0.00527263937745337!GO:0048468;cell development;0.00531292064616128!GO:0044433;cytoplasmic vesicle part;0.00531677848641632!GO:0008610;lipid biosynthetic process;0.00539533152696601!GO:0000049;tRNA binding;0.00540805084320084!GO:0019752;carboxylic acid metabolic process;0.00541168513710399!GO:0003684;damaged DNA binding;0.00542583529263046!GO:0030384;phosphoinositide metabolic process;0.00551651264421206!GO:0006352;transcription initiation;0.00556275277823444!GO:0006505;GPI anchor metabolic process;0.00562923542610424!GO:0006405;RNA export from nucleus;0.00575971684169506!GO:0030127;COPII vesicle coat;0.00588113760169922!GO:0012507;ER to Golgi transport vesicle membrane;0.00588113760169922!GO:0030660;Golgi-associated vesicle membrane;0.00603792289920965!GO:0004177;aminopeptidase activity;0.00623910075229961!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.00624775001559287!GO:0051287;NAD binding;0.00628161081608825!GO:0030031;cell projection biogenesis;0.00645579931885476!GO:0006082;organic acid metabolic process;0.00653237045140697!GO:0043492;ATPase activity, coupled to movement of substances;0.0067708264789012!GO:0006650;glycerophospholipid metabolic process;0.0067972946917278!GO:0050662;coenzyme binding;0.00693604788877761!GO:0051540;metal cluster binding;0.00695836078814472!GO:0051536;iron-sulfur cluster binding;0.00695836078814472!GO:0043488;regulation of mRNA stability;0.0070257706402537!GO:0043487;regulation of RNA stability;0.0070257706402537!GO:0003678;DNA helicase activity;0.00712513871215837!GO:0000776;kinetochore;0.00725015177585094!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0072571234497224!GO:0007052;mitotic spindle organization and biogenesis;0.00776720705209334!GO:0016251;general RNA polymerase II transcription factor activity;0.00778283883037701!GO:0006289;nucleotide-excision repair;0.0080039184865335!GO:0008139;nuclear localization sequence binding;0.00802326922585778!GO:0009112;nucleobase metabolic process;0.00806659720702994!GO:0043022;ribosome binding;0.00822739777196809!GO:0051539;4 iron, 4 sulfur cluster binding;0.0083667423389896!GO:0005862;muscle thin filament tropomyosin;0.00837649007022458!GO:0006611;protein export from nucleus;0.00860377063109104!GO:0000075;cell cycle checkpoint;0.00866647405730716!GO:0006595;polyamine metabolic process;0.00872079252191019!GO:0005869;dynactin complex;0.00903241377415063!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00903326492863208!GO:0006417;regulation of translation;0.00903326492863208!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00903326492863208!GO:0006310;DNA recombination;0.00924128227851655!GO:0030119;AP-type membrane coat adaptor complex;0.00924245015274568!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0093133435245344!GO:0031901;early endosome membrane;0.00939736949538171!GO:0012506;vesicle membrane;0.00966368079262588!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00966503347929838!GO:0000428;DNA-directed RNA polymerase complex;0.00966503347929838!GO:0007017;microtubule-based process;0.00966823375353985!GO:0006520;amino acid metabolic process;0.00998684917704647!GO:0035258;steroid hormone receptor binding;0.0102583419161801!GO:0008047;enzyme activator activity;0.010268821108457!GO:0045893;positive regulation of transcription, DNA-dependent;0.0103152008987351!GO:0016408;C-acyltransferase activity;0.0103784512076831!GO:0009116;nucleoside metabolic process;0.0107312595771607!GO:0051052;regulation of DNA metabolic process;0.0107610075315815!GO:0000082;G1/S transition of mitotic cell cycle;0.0107706472052017!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0108686945420264!GO:0008312;7S RNA binding;0.0112147053459292!GO:0006695;cholesterol biosynthetic process;0.0114107571233561!GO:0043624;cellular protein complex disassembly;0.0114542666535496!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.011510133887827!GO:0045047;protein targeting to ER;0.011510133887827!GO:0005637;nuclear inner membrane;0.0115152956831137!GO:0015631;tubulin binding;0.0115152956831137!GO:0005876;spindle microtubule;0.0115214158433877!GO:0006509;membrane protein ectodomain proteolysis;0.0115249530306148!GO:0033619;membrane protein proteolysis;0.0115249530306148!GO:0005832;chaperonin-containing T-complex;0.0115249530306148!GO:0032508;DNA duplex unwinding;0.0115249530306148!GO:0032392;DNA geometric change;0.0115249530306148!GO:0030027;lamellipodium;0.0115249530306148!GO:0032984;macromolecular complex disassembly;0.0120392843029366!GO:0006892;post-Golgi vesicle-mediated transport;0.0123124967351392!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0123179084015835!GO:0015002;heme-copper terminal oxidase activity;0.0123179084015835!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0123179084015835!GO:0004129;cytochrome-c oxidase activity;0.0123179084015835!GO:0022406;membrane docking;0.0125611681651028!GO:0048278;vesicle docking;0.0125611681651028!GO:0007030;Golgi organization and biogenesis;0.0126168859123449!GO:0004674;protein serine/threonine kinase activity;0.0127728402031846!GO:0006376;mRNA splice site selection;0.0133829607597613!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0133829607597613!GO:0006904;vesicle docking during exocytosis;0.013418872410555!GO:0046966;thyroid hormone receptor binding;0.0134279162121445!GO:0044438;microbody part;0.0135839150650017!GO:0044439;peroxisomal part;0.0135839150650017!GO:0008629;induction of apoptosis by intracellular signals;0.0150457527462873!GO:0006984;ER-nuclear signaling pathway;0.0151298630822065!GO:0031323;regulation of cellular metabolic process;0.0153701352480014!GO:0032940;secretion by cell;0.0157235048820457!GO:0006778;porphyrin metabolic process;0.0157832560102489!GO:0033013;tetrapyrrole metabolic process;0.0157832560102489!GO:0006268;DNA unwinding during replication;0.0170993864596313!GO:0006144;purine base metabolic process;0.0172316530001321!GO:0043241;protein complex disassembly;0.0173828168204256!GO:0030131;clathrin adaptor complex;0.0175000621941276!GO:0030521;androgen receptor signaling pathway;0.0175666334759975!GO:0000209;protein polyubiquitination;0.0175706794900992!GO:0004527;exonuclease activity;0.0175706794900992!GO:0031625;ubiquitin protein ligase binding;0.0175706794900992!GO:0003923;GPI-anchor transamidase activity;0.0177263721390973!GO:0016255;attachment of GPI anchor to protein;0.0177263721390973!GO:0042765;GPI-anchor transamidase complex;0.0177263721390973!GO:0031124;mRNA 3'-end processing;0.0178901289802268!GO:0008234;cysteine-type peptidase activity;0.0180174519584267!GO:0007088;regulation of mitosis;0.0189462397205949!GO:0030125;clathrin vesicle coat;0.0189462397205949!GO:0030665;clathrin coated vesicle membrane;0.0189462397205949!GO:0006220;pyrimidine nucleotide metabolic process;0.0192032180514848!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0194710547747421!GO:0016741;transferase activity, transferring one-carbon groups;0.0199190910857824!GO:0008168;methyltransferase activity;0.0199844480524465!GO:0007021;tubulin folding;0.0200555371868752!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0201329521883219!GO:0006779;porphyrin biosynthetic process;0.0201956527219455!GO:0033014;tetrapyrrole biosynthetic process;0.0201956527219455!GO:0030032;lamellipodium biogenesis;0.0205771524372592!GO:0007093;mitotic cell cycle checkpoint;0.0206827047087331!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0208840704920937!GO:0006917;induction of apoptosis;0.0210931099890584!GO:0031903;microbody membrane;0.0214720565771221!GO:0005778;peroxisomal membrane;0.0214720565771221!GO:0005669;transcription factor TFIID complex;0.0221504631220276!GO:0006740;NADPH regeneration;0.0221852351655622!GO:0006098;pentose-phosphate shunt;0.0221852351655622!GO:0046870;cadmium ion binding;0.0223311304611443!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0225865380939855!GO:0003702;RNA polymerase II transcription factor activity;0.0228819335444296!GO:0045792;negative regulation of cell size;0.0229806665299079!GO:0008637;apoptotic mitochondrial changes;0.0229806665299079!GO:0032200;telomere organization and biogenesis;0.0230257763213469!GO:0000723;telomere maintenance;0.0230257763213469!GO:0045941;positive regulation of transcription;0.0231417449892518!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0232786046955265!GO:0040008;regulation of growth;0.0233060826996107!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0235204138145276!GO:0012502;induction of programmed cell death;0.0237884867419937!GO:0000339;RNA cap binding;0.0241608369404181!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0246939304689307!GO:0022890;inorganic cation transmembrane transporter activity;0.0255697987169658!GO:0031543;peptidyl-proline dioxygenase activity;0.0256456601895186!GO:0003779;actin binding;0.0262465499677587!GO:0007264;small GTPase mediated signal transduction;0.0262465499677587!GO:0022411;cellular component disassembly;0.0263686003097635!GO:0030308;negative regulation of cell growth;0.0264401083591038!GO:0016584;nucleosome positioning;0.0264897981465512!GO:0006378;mRNA polyadenylation;0.0270409267491506!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0271562849136549!GO:0050811;GABA receptor binding;0.0271889187571502!GO:0031529;ruffle organization and biogenesis;0.0275726617027106!GO:0000781;chromosome, telomeric region;0.0275850709199979!GO:0019206;nucleoside kinase activity;0.0276435742028742!GO:0042168;heme metabolic process;0.0282139154267812!GO:0007050;cell cycle arrest;0.0282393293724596!GO:0003746;translation elongation factor activity;0.0283805334204899!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0284398732889963!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0291381697438896!GO:0010257;NADH dehydrogenase complex assembly;0.0291381697438896!GO:0033108;mitochondrial respiratory chain complex assembly;0.0291381697438896!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0294860034262207!GO:0004197;cysteine-type endopeptidase activity;0.029691505865624!GO:0051128;regulation of cellular component organization and biogenesis;0.0299478819655735!GO:0048037;cofactor binding;0.0301606135389635!GO:0008538;proteasome activator activity;0.0303828949824257!GO:0000096;sulfur amino acid metabolic process;0.0307547789916666!GO:0000922;spindle pole;0.0308973386300071!GO:0006672;ceramide metabolic process;0.0322651705038637!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0323188183160754!GO:0009451;RNA modification;0.032416357964387!GO:0006338;chromatin remodeling;0.0326287321949828!GO:0005758;mitochondrial intermembrane space;0.0330299664640139!GO:0031326;regulation of cellular biosynthetic process;0.0332065679020169!GO:0007059;chromosome segregation;0.0334738629820507!GO:0006979;response to oxidative stress;0.0334764241274258!GO:0047485;protein N-terminus binding;0.0341797482887839!GO:0006118;electron transport;0.0341797482887839!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0341906060575771!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0342121508592912!GO:0006350;transcription;0.0348325071018881!GO:0031970;organelle envelope lumen;0.0353612030832039!GO:0006783;heme biosynthetic process;0.0355172883139806!GO:0030518;steroid hormone receptor signaling pathway;0.0355423681172035!GO:0033673;negative regulation of kinase activity;0.0355929047698588!GO:0006469;negative regulation of protein kinase activity;0.0355929047698588!GO:0032594;protein transport within lipid bilayer;0.0358410819949282!GO:0032907;transforming growth factor-beta3 production;0.0358410819949282!GO:0032596;protein transport into lipid raft;0.0358410819949282!GO:0032910;regulation of transforming growth factor-beta3 production;0.0358410819949282!GO:0032595;B cell receptor transport within lipid bilayer;0.0358410819949282!GO:0033606;chemokine receptor transport within lipid bilayer;0.0358410819949282!GO:0032600;chemokine receptor transport out of lipid raft;0.0358410819949282!GO:0032599;protein transport out of lipid raft;0.0358410819949282!GO:0032597;B cell receptor transport into lipid raft;0.0358410819949282!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0358410819949282!GO:0006360;transcription from RNA polymerase I promoter;0.0369629463012924!GO:0046983;protein dimerization activity;0.0371748093516377!GO:0019798;procollagen-proline dioxygenase activity;0.0371832177745951!GO:0005784;translocon complex;0.0374628194638936!GO:0031902;late endosome membrane;0.0377682154080938!GO:0030833;regulation of actin filament polymerization;0.0382776221758421!GO:0032906;transforming growth factor-beta2 production;0.0387795697246309!GO:0032909;regulation of transforming growth factor-beta2 production;0.0387795697246309!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0391600816009843!GO:0046519;sphingoid metabolic process;0.0400909635139915!GO:0044262;cellular carbohydrate metabolic process;0.0408766022709341!GO:0035267;NuA4 histone acetyltransferase complex;0.0415483970049714!GO:0009124;nucleoside monophosphate biosynthetic process;0.0415483970049714!GO:0009123;nucleoside monophosphate metabolic process;0.0415483970049714!GO:0000118;histone deacetylase complex;0.041557648270188!GO:0065009;regulation of a molecular function;0.0417214422623234!GO:0007040;lysosome organization and biogenesis;0.0431265687471638!GO:0030508;thiol-disulfide exchange intermediate activity;0.0432352559589535!GO:0003725;double-stranded RNA binding;0.0432388688102361!GO:0043130;ubiquitin binding;0.0436190251016689!GO:0032182;small conjugating protein binding;0.0436190251016689!GO:0048144;fibroblast proliferation;0.0437123863861726!GO:0048145;regulation of fibroblast proliferation;0.0437123863861726!GO:0000152;nuclear ubiquitin ligase complex;0.0437409915663742!GO:0005774;vacuolar membrane;0.0437409915663742!GO:0005938;cell cortex;0.0438036050207478!GO:0006897;endocytosis;0.0438095717495909!GO:0010324;membrane invagination;0.0438095717495909!GO:0009303;rRNA transcription;0.044115524307265!GO:0051348;negative regulation of transferase activity;0.0442176564118938!GO:0031418;L-ascorbic acid binding;0.0444926752868715!GO:0007004;telomere maintenance via telomerase;0.0447228697865373!GO:0050681;androgen receptor binding;0.0456838655225866!GO:0046822;regulation of nucleocytoplasmic transport;0.0456838655225866!GO:0019201;nucleotide kinase activity;0.0474755705717235!GO:0031371;ubiquitin conjugating enzyme complex;0.0475434469975974!GO:0016579;protein deubiquitination;0.0477975397604171!GO:0004003;ATP-dependent DNA helicase activity;0.0478787823300949!GO:0007034;vacuolar transport;0.0478823127714617!GO:0031123;RNA 3'-end processing;0.0486255383766008!GO:0005777;peroxisome;0.0486255383766008!GO:0042579;microbody;0.0486255383766008!GO:0030911;TPR domain binding;0.0486477539504566!GO:0009081;branched chain family amino acid metabolic process;0.0488774846443388!GO:0042393;histone binding;0.0499813176654492
+|sample_id=10852
+|sample_note=
+|sample_sex=male
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=mesothelium
+|top_motifs=AIRE:1.45813574767;HSF1,2:1.23050133001;TEF:1.20351758506;ELK1,4_GABP{A,B1}:1.07765644108;NFE2L1:1.05464096819;EVI1:0.964297023224;NKX3-1:0.960056597752;TEAD1:0.934742051228;HOX{A5,B5}:0.868259307685;ADNP_IRX_SIX_ZHX:0.83515319513;NR3C1:0.783945062016;GATA4:0.757387537515;POU1F1:0.75365001386;GZF1:0.713080418945;TAL1_TCF{3,4,12}:0.681439906032;UFEwm:0.676301196681;ARID5B:0.675151612623;NR6A1:0.584395075374;ZNF384:0.579664096173;GCM1,2:0.571002955985;bHLH_family:0.547837449142;KLF4:0.539006452406;GFI1B:0.535177437032;GFI1:0.53403876648;HOXA9_MEIS1:0.533813531785;ONECUT1,2:0.514178078472;GLI1..3:0.457465452785;LMO2:0.440054827524;ZBTB6:0.438492252331;POU3F1..4:0.429259353387;CDX1,2,4:0.404435934661;PAX5:0.391908612974;HMGA1,2:0.385261014144;BACH2:0.364604135952;HIF1A:0.355543807708;NKX6-1,2:0.352342456512;ZBTB16:0.35058188826;POU5F1:0.343575031881;TP53:0.342797088821;NR1H4:0.306324485603;RXR{A,B,G}:0.305532730503;NRF1:0.303406204395;ZNF143:0.277600750355;XCPE1{core}:0.274717266839;MYBL2:0.268012581625;EN1,2:0.258520863726;PRRX1,2:0.258478863648;PAX4:0.253059070356;NKX3-2:0.249673073218;POU6F1:0.20257104336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.202072398646;TBX4,5:0.201646292162;NFE2L2:0.19088684885;NFY{A,B,C}:0.188754794937;SNAI1..3:0.178141057921;LHX3,4:0.159921211237;YY1:0.14811653717;MZF1:0.147771305055;TLX1..3_NFIC{dimer}:0.142408087423;NFE2:0.137061404332;PPARG:0.123676685056;TOPORS:0.119800423379;SOX17:0.0991763223778;IKZF1:0.0728175012648;GTF2A1,2:0.0659380164224;ELF1,2,4:0.0636614267222;FOXQ1:0.0636185270794;PITX1..3:0.0599552919843;ZEB1:0.0578881744172;MYOD1:0.0567691308774;FOS_FOS{B,L1}_JUN{B,D}:0.0390752733639;MYB:0.0371369170495;TBP:0.0307790950489;ATF6:0.0213805432525;XBP1:0.0156368644991;E2F1..5:0.0036632859824;NKX2-2,8:0.00289397761435;ZNF148:-0.00110487942095;FOXN1:-0.00819207978584;GTF2I:-0.00922043679647;FOX{I1,J2}:-0.0136413507244;MTF1:-0.0155447492424;SOX2:-0.0173914172582;TFAP2B:-0.0257372966712;HES1:-0.0260221110821;CDC5L:-0.0299212380312;RXRA_VDR{dimer}:-0.0342814337982;HOX{A4,D4}:-0.0436841537072;SRF:-0.0518877171518;RFX1:-0.0613782797758;SP1:-0.0646552083955;PRDM1:-0.0765785151179;STAT1,3:-0.077489197825;FOXA2:-0.0778554937685;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0812641853819;TFDP1:-0.0964550214103;PAX3,7:-0.110150634587;NFATC1..3:-0.11850532401;TFAP2{A,C}:-0.123686977629;ALX1:-0.12566093814;EP300:-0.125791603997;PDX1:-0.1445424413;HLF:-0.145333664887;AHR_ARNT_ARNT2:-0.161811661011;OCT4_SOX2{dimer}:-0.161887408516;STAT5{A,B}:-0.164964715254;PAX6:-0.17173246425;HNF4A_NR2F1,2:-0.172654273083;T:-0.177673968319;HOX{A6,A7,B6,B7}:-0.18060641104;IRF1,2:-0.19113744133;FOXM1:-0.19662036946;FOSL2:-0.19717645404;HNF1A:-0.197435477779;HBP1_HMGB_SSRP1_UBTF:-0.211199728302;TFCP2:-0.212051476381;ALX4:-0.213743789962;IRF7:-0.229117945819;FOXL1:-0.231976222964;MYFfamily:-0.234824803583;PAX8:-0.237843569941;REST:-0.271653172371;DBP:-0.273375432296;ZIC1..3:-0.275847637578;BREu{core}:-0.282956601522;NFKB1_REL_RELA:-0.28804435966;MAZ:-0.295393664618;ATF5_CREB3:-0.297338770818;PBX1:-0.300030518391;IKZF2:-0.319540555953;CRX:-0.324637079599;MAFB:-0.325042966924;SPIB:-0.339189181896;HAND1,2:-0.348611369216;HIC1:-0.353507593812;SOX{8,9,10}:-0.373926759033;SMAD1..7,9:-0.379014481766;NKX2-3_NKX2-5:-0.381800371168;NFIX:-0.39059977962;GATA6:-0.411181958835;AR:-0.411958541616;NR5A1,2:-0.43577401239;FOXO1,3,4:-0.445123179472;CUX2:-0.450063262912;LEF1_TCF7_TCF7L1,2:-0.450773300295;NKX2-1,4:-0.455600801487;NHLH1,2:-0.46836842986;PAX2:-0.470072714119;MTE{core}:-0.473940107768;FOXP1:-0.476147153796;ZFP161:-0.489368752156;ETS1,2:-0.497770154417;RUNX1..3:-0.524518401303;EGR1..3:-0.546543723175;FOX{D1,D2}:-0.558962969013;EBF1:-0.574316535463;VSX1,2:-0.577735293581;POU2F1..3:-0.578790432464;MED-1{core}:-0.585069102932;FOXD3:-0.606035921664;MEF2{A,B,C,D}:-0.606127923488;FOX{F1,F2,J1}:-0.612046497412;ZNF238:-0.618601905042;CEBPA,B_DDIT3:-0.627693063771;SPI1:-0.632077128433;TFAP4:-0.676128713687;ATF2:-0.681562772881;RBPJ:-0.690230409621;DMAP1_NCOR{1,2}_SMARC:-0.691011139694;ATF4:-0.695899773597;CREB1:-0.704326053718;PATZ1:-0.7071719762;HMX1:-0.708785407964;STAT2,4,6:-0.716601717373;NANOG:-0.758426264573;FOXP3:-0.760302290862;SREBF1,2:-0.807377632879;ESR1:-0.808952075968;SPZ1:-0.825708275688;ZNF423:-0.834149676937;TGIF1:-0.836207788623;ESRRA:-0.879601654232;RFX2..5_RFXANK_RFXAP:-0.880285794703;NANOG{mouse}:-0.891133553754;RREB1:-0.892007988095;JUN:-0.941961813206;RORA:-1.05399424821;SOX5:-1.05687225018;TLX2:-1.1170209785;NFIL3:-1.16083481251;BPTF:-1.27150094618;PAX1,9:-1.91089370762
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10852-111F6;search_select_hide=table117:FF:10852-111F6
 }}

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FF:10852-111F6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0