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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005722
|DRA_sample_Accession=CAGE@SAMD00005722
|accession_numbers=CAGE;DRX008475;DRR009347;DRZ000772;DRZ002157
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005722
|accession_numbers=CAGE;DRX008475;DRR009347;DRZ000772;DRZ002157;DRZ012122;DRZ013507
|accession_numbers_RNASeq=sRNA-Seq;DRX037177;DRR041543;DRZ007185
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0002049,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001016,UBERON:0004535,UBERON:0001009
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002590
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10011,,,
|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=MYBL2:1.56551419;PAX4:1.55674412854;TAL1_TCF{3,4,12}:1.36083989227;PAX1,9:1.19960532903;HSF1,2:1.16048956019;LHX3,4:1.14206035651;HMGA1,2:1.14155985482;HBP1_HMGB_SSRP1_UBTF:1.13250897747;TFAP4:1.095773415;TEF:1.05632198388;NR3C1:0.954548116241;TEAD1:0.919181858996;GFI1:0.857254035593;GFI1B:0.853196321445;HOX{A5,B5}:0.826607857872;ZNF238:0.817621689262;EBF1:0.790051616426;ATF6:0.775533541737;IKZF1:0.755661779177;XBP1:0.755193262497;GZF1:0.748340505335;EN1,2:0.701937471452;GTF2A1,2:0.678663294362;ZNF384:0.669180393864;ZIC1..3:0.668424531748;SREBF1,2:0.655169328318;SRF:0.637739937115;RBPJ:0.618096540341;MEF2{A,B,C,D}:0.589720680665;NKX6-1,2:0.579076400219;LEF1_TCF7_TCF7L1,2:0.570352868683;NKX2-2,8:0.528713674507;MAZ:0.528393848459;CDC5L:0.52487554633;SOX17:0.522580794339;NFIX:0.521031615268;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.515341565262;POU3F1..4:0.510765581106;NFY{A,B,C}:0.510639078194;AIRE:0.488824295733;ARID5B:0.482408920229;PAX8:0.479085156558;FOXD3:0.468644203593;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453376599264;PAX5:0.420493114252;HOXA9_MEIS1:0.415889387952;EVI1:0.415752336593;SOX5:0.399437692909;TLX1..3_NFIC{dimer}:0.397920108982;ADNP_IRX_SIX_ZHX:0.397434553153;CDX1,2,4:0.372753003258;STAT5{A,B}:0.36744903808;NFATC1..3:0.36136076563;T:0.350751686821;FOXL1:0.342852244578;TBX4,5:0.325872413277;PDX1:0.315340352116;HES1:0.310282468371;FOXP1:0.308416943791;ALX4:0.299382077661;YY1:0.294744134937;NKX3-1:0.270942722012;SP1:0.265783926421;NKX2-3_NKX2-5:0.252734432533;ZNF143:0.246010785829;ESRRA:0.221682965724;GATA4:0.207004088191;ZBTB16:0.205542330329;NRF1:0.197015684514;GTF2I:0.188058125673;NHLH1,2:0.170763469065;FOX{I1,J2}:0.170372099079;TP53:0.166555433833;TBP:0.158923030905;SOX2:0.15806662626;E2F1..5:0.153603397412;PATZ1:0.151364590981;NANOG{mouse}:0.15094342729;SPZ1:0.149400180613;NFE2L2:0.139874341409;ZNF423:0.123981094159;HNF4A_NR2F1,2:0.12360909165;UFEwm:0.118824466306;IRF7:0.118474921144;ZFP161:0.114996494508;TFCP2:0.109626070973;ELK1,4_GABP{A,B1}:0.103096333917;HIC1:0.102952364661;MYFfamily:0.0751121900491;TGIF1:0.0742504138442;STAT1,3:0.0677906680749;FOXA2:0.0629606902527;IRF1,2:0.0548508674497;HOX{A4,D4}:0.0543188620492;GCM1,2:0.04848171753;bHLH_family:0.0234694435282;KLF4:0.0180393058683;RXR{A,B,G}:0.0078944580858;OCT4_SOX2{dimer}:0.00472623760243;TFDP1:0.00326663939;MZF1:0.00274009339788;NANOG:-0.000763885252232;POU1F1:-0.0091438658119;HNF1A:-0.0255353328213;AR:-0.0293595341858;ESR1:-0.0335749025733;NR5A1,2:-0.03700014398;HAND1,2:-0.0384468834742;ELF1,2,4:-0.0393402356256;PAX3,7:-0.0472233593939;FOXO1,3,4:-0.0482099438809;RFX1:-0.0606216886271;PAX2:-0.0674066263989;HIF1A:-0.0696704361982;XCPE1{core}:-0.070855994865;STAT2,4,6:-0.0821955845596;NKX2-1,4:-0.0848161297914;HLF:-0.0867431910877;PPARG:-0.0893116416141;BACH2:-0.0929775105329;ZNF148:-0.108836958341;PAX6:-0.119092560684;FOSL2:-0.1239249669;PRRX1,2:-0.135071629068;NR1H4:-0.140843099889;ZBTB6:-0.14428523744;JUN:-0.152661317892;DBP:-0.160699201778;FOS_FOS{B,L1}_JUN{B,D}:-0.160993612394;BPTF:-0.193890732795;RUNX1..3:-0.214864191286;TFAP2B:-0.21891120139;HOX{A6,A7,B6,B7}:-0.221378381803;TFAP2{A,C}:-0.223137825223;SOX{8,9,10}:-0.233957948544;MYB:-0.252477684575;ONECUT1,2:-0.277953953431;MTE{core}:-0.280278110411;HMX1:-0.288446492706;PBX1:-0.288877598774;PRDM1:-0.307694947467;CRX:-0.312954656934;NR6A1:-0.31502315334;NFE2:-0.315862752822;ETS1,2:-0.318369251275;CUX2:-0.326795522312;FOXP3:-0.343729616943;CEBPA,B_DDIT3:-0.345373843045;ATF4:-0.362263888079;NFKB1_REL_RELA:-0.373437032064;RORA:-0.391313520533;FOXM1:-0.399081281058;MYOD1:-0.399610858566;EGR1..3:-0.411621044153;GLI1..3:-0.412675194832;POU5F1:-0.412735030618;POU6F1:-0.418507418275;DMAP1_NCOR{1,2}_SMARC:-0.418682596774;IKZF2:-0.425260621071;AHR_ARNT_ARNT2:-0.429269322905;MED-1{core}:-0.430340887268;FOXQ1:-0.430660406383;REST:-0.431629559834;MAFB:-0.433058024593;CREB1:-0.436981236493;RXRA_VDR{dimer}:-0.44100858164;NKX3-2:-0.445892026452;MTF1:-0.448370328855;RREB1:-0.461155890519;GATA6:-0.468302395485;SPIB:-0.490418983268;FOX{F1,F2,J1}:-0.509755948746;NFIL3:-0.514342686937;SNAI1..3:-0.53961057683;RFX2..5_RFXANK_RFXAP:-0.558304515409;SPI1:-0.561614668613;TOPORS:-0.568552666635;PITX1..3:-0.585860648939;ATF2:-0.58935057;LMO2:-0.657747504721;ATF5_CREB3:-0.672477318022;BREu{core}:-0.67957255527;NFE2L1:-0.685607755187;SMAD1..7,9:-0.700041873872;TLX2:-0.732946308831;FOX{D1,D2}:-0.738053460894;FOXN1:-0.743650062176;POU2F1..3:-0.750102214861;EP300:-0.906420671676;ZEB1:-0.916298921932;ALX1:-1.00260905387;VSX1,2:-1.0549569208
|top_motifs=MYBL2:1.56551419;PAX4:1.55674412854;TAL1_TCF{3,4,12}:1.36083989227;PAX1,9:1.19960532903;HSF1,2:1.16048956019;LHX3,4:1.14206035651;HMGA1,2:1.14155985482;HBP1_HMGB_SSRP1_UBTF:1.13250897747;TFAP4:1.095773415;TEF:1.05632198388;NR3C1:0.954548116241;TEAD1:0.919181858996;GFI1:0.857254035593;GFI1B:0.853196321445;HOX{A5,B5}:0.826607857872;ZNF238:0.817621689262;EBF1:0.790051616426;ATF6:0.775533541737;IKZF1:0.755661779177;XBP1:0.755193262497;GZF1:0.748340505335;EN1,2:0.701937471452;GTF2A1,2:0.678663294362;ZNF384:0.669180393864;ZIC1..3:0.668424531748;SREBF1,2:0.655169328318;SRF:0.637739937115;RBPJ:0.618096540341;MEF2{A,B,C,D}:0.589720680665;NKX6-1,2:0.579076400219;LEF1_TCF7_TCF7L1,2:0.570352868683;NKX2-2,8:0.528713674507;MAZ:0.528393848459;CDC5L:0.52487554633;SOX17:0.522580794339;NFIX:0.521031615268;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.515341565262;POU3F1..4:0.510765581106;NFY{A,B,C}:0.510639078194;AIRE:0.488824295733;ARID5B:0.482408920229;PAX8:0.479085156558;FOXD3:0.468644203593;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453376599264;PAX5:0.420493114252;HOXA9_MEIS1:0.415889387952;EVI1:0.415752336593;SOX5:0.399437692909;TLX1..3_NFIC{dimer}:0.397920108982;ADNP_IRX_SIX_ZHX:0.397434553153;CDX1,2,4:0.372753003258;STAT5{A,B}:0.36744903808;NFATC1..3:0.36136076563;T:0.350751686821;FOXL1:0.342852244578;TBX4,5:0.325872413277;PDX1:0.315340352116;HES1:0.310282468371;FOXP1:0.308416943791;ALX4:0.299382077661;YY1:0.294744134937;NKX3-1:0.270942722012;SP1:0.265783926421;NKX2-3_NKX2-5:0.252734432533;ZNF143:0.246010785829;ESRRA:0.221682965724;GATA4:0.207004088191;ZBTB16:0.205542330329;NRF1:0.197015684514;GTF2I:0.188058125673;NHLH1,2:0.170763469065;FOX{I1,J2}:0.170372099079;TP53:0.166555433833;TBP:0.158923030905;SOX2:0.15806662626;E2F1..5:0.153603397412;PATZ1:0.151364590981;NANOG{mouse}:0.15094342729;SPZ1:0.149400180613;NFE2L2:0.139874341409;ZNF423:0.123981094159;HNF4A_NR2F1,2:0.12360909165;UFEwm:0.118824466306;IRF7:0.118474921144;ZFP161:0.114996494508;TFCP2:0.109626070973;ELK1,4_GABP{A,B1}:0.103096333917;HIC1:0.102952364661;MYFfamily:0.0751121900491;TGIF1:0.0742504138442;STAT1,3:0.0677906680749;FOXA2:0.0629606902527;IRF1,2:0.0548508674497;HOX{A4,D4}:0.0543188620492;GCM1,2:0.04848171753;bHLH_family:0.0234694435282;KLF4:0.0180393058683;RXR{A,B,G}:0.0078944580858;OCT4_SOX2{dimer}:0.00472623760243;TFDP1:0.00326663939;MZF1:0.00274009339788;NANOG:-0.000763885252232;POU1F1:-0.0091438658119;HNF1A:-0.0255353328213;AR:-0.0293595341858;ESR1:-0.0335749025733;NR5A1,2:-0.03700014398;HAND1,2:-0.0384468834742;ELF1,2,4:-0.0393402356256;PAX3,7:-0.0472233593939;FOXO1,3,4:-0.0482099438809;RFX1:-0.0606216886271;PAX2:-0.0674066263989;HIF1A:-0.0696704361982;XCPE1{core}:-0.070855994865;STAT2,4,6:-0.0821955845596;NKX2-1,4:-0.0848161297914;HLF:-0.0867431910877;PPARG:-0.0893116416141;BACH2:-0.0929775105329;ZNF148:-0.108836958341;PAX6:-0.119092560684;FOSL2:-0.1239249669;PRRX1,2:-0.135071629068;NR1H4:-0.140843099889;ZBTB6:-0.14428523744;JUN:-0.152661317892;DBP:-0.160699201778;FOS_FOS{B,L1}_JUN{B,D}:-0.160993612394;BPTF:-0.193890732795;RUNX1..3:-0.214864191286;TFAP2B:-0.21891120139;HOX{A6,A7,B6,B7}:-0.221378381803;TFAP2{A,C}:-0.223137825223;SOX{8,9,10}:-0.233957948544;MYB:-0.252477684575;ONECUT1,2:-0.277953953431;MTE{core}:-0.280278110411;HMX1:-0.288446492706;PBX1:-0.288877598774;PRDM1:-0.307694947467;CRX:-0.312954656934;NR6A1:-0.31502315334;NFE2:-0.315862752822;ETS1,2:-0.318369251275;CUX2:-0.326795522312;FOXP3:-0.343729616943;CEBPA,B_DDIT3:-0.345373843045;ATF4:-0.362263888079;NFKB1_REL_RELA:-0.373437032064;RORA:-0.391313520533;FOXM1:-0.399081281058;MYOD1:-0.399610858566;EGR1..3:-0.411621044153;GLI1..3:-0.412675194832;POU5F1:-0.412735030618;POU6F1:-0.418507418275;DMAP1_NCOR{1,2}_SMARC:-0.418682596774;IKZF2:-0.425260621071;AHR_ARNT_ARNT2:-0.429269322905;MED-1{core}:-0.430340887268;FOXQ1:-0.430660406383;REST:-0.431629559834;MAFB:-0.433058024593;CREB1:-0.436981236493;RXRA_VDR{dimer}:-0.44100858164;NKX3-2:-0.445892026452;MTF1:-0.448370328855;RREB1:-0.461155890519;GATA6:-0.468302395485;SPIB:-0.490418983268;FOX{F1,F2,J1}:-0.509755948746;NFIL3:-0.514342686937;SNAI1..3:-0.53961057683;RFX2..5_RFXANK_RFXAP:-0.558304515409;SPI1:-0.561614668613;TOPORS:-0.568552666635;PITX1..3:-0.585860648939;ATF2:-0.58935057;LMO2:-0.657747504721;ATF5_CREB3:-0.672477318022;BREu{core}:-0.67957255527;NFE2L1:-0.685607755187;SMAD1..7,9:-0.700041873872;TLX2:-0.732946308831;FOX{D1,D2}:-0.738053460894;FOXN1:-0.743650062176;POU2F1..3:-0.750102214861;EP300:-0.906420671676;ZEB1:-0.916298921932;ALX1:-1.00260905387;VSX1,2:-1.0549569208
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11234-116D1;search_select_hide=table117:FF:11234-116D1
}}
}}

Latest revision as of 16:26, 3 June 2020

Name:Smooth Muscle Cells - Brain Vascular, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10863
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stagefetus
sexunknown
agefetal
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2733
catalog numberSC1105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005722
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10863 CAGE DRX008475 DRR009347
Accession ID Hg19

Library idBAMCTSS
CNhs10863 DRZ000772 DRZ002157
Accession ID Hg38

Library idBAMCTSS
CNhs10863 DRZ012122 DRZ013507
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005722
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.GTAGAG sRNA-Seq DRX037177 DRR041543
Accession ID Hg19

Library idBAMCTSS
SRhi10011.GTAGAG DRZ007185


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.148
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.182
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0136
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0696
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.318
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.202
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.072
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0209
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0524
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0423
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.071
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.396
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.242
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.137
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.242
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.326
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.396
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10863

Jaspar motifP-value
MA0002.20.209
MA0003.10.49
MA0004.10.544
MA0006.10.123
MA0007.10.531
MA0009.10.174
MA0014.10.469
MA0017.10.524
MA0018.20.0034
MA0019.10.485
MA0024.10.0863
MA0025.11.0718e-4
MA0027.10.705
MA0028.10.0725
MA0029.10.548
MA0030.10.0178
MA0031.10.00508
MA0035.20.0417
MA0038.10.00369
MA0039.20.162
MA0040.10.807
MA0041.10.96
MA0042.10.407
MA0043.10.00324
MA0046.10.883
MA0047.20.357
MA0048.10.165
MA0050.10.712
MA0051.10.589
MA0052.10.71
MA0055.10.191
MA0057.10.868
MA0058.10.252
MA0059.10.393
MA0060.14.85049e-4
MA0061.11.81579e-5
MA0062.20.0204
MA0065.20.589
MA0066.10.544
MA0067.10.0503
MA0068.10.283
MA0069.10.948
MA0070.10.526
MA0071.10.878
MA0072.10.733
MA0073.10.999
MA0074.10.329
MA0076.10.583
MA0077.10.697
MA0078.10.195
MA0079.20.23
MA0080.21.25486e-9
MA0081.10.189
MA0083.10.0113
MA0084.10.184
MA0087.10.0273
MA0088.10.476
MA0090.11.14455e-5
MA0091.10.0984
MA0092.10.812
MA0093.10.535
MA0099.24.46647e-4
MA0100.10.481
MA0101.11.4519e-4
MA0102.20.00584
MA0103.11.35493e-4
MA0104.20.142
MA0105.10.051
MA0106.10.618
MA0107.11.51795e-5
MA0108.20.328
MA0111.10.52
MA0112.20.628
MA0113.10.822
MA0114.10.965
MA0115.10.438
MA0116.10.848
MA0117.10.561
MA0119.10.178
MA0122.10.612
MA0124.10.17
MA0125.10.525
MA0131.10.368
MA0135.10.443
MA0136.13.13097e-10
MA0137.20.916
MA0138.20.416
MA0139.10.992
MA0140.10.975
MA0141.10.993
MA0142.10.347
MA0143.10.552
MA0144.10.811
MA0145.10.85
MA0146.10.373
MA0147.10.0491
MA0148.10.592
MA0149.10.875
MA0150.17.71801e-4
MA0152.10.00942
MA0153.10.0837
MA0154.10.0409
MA0155.10.997
MA0156.15.66278e-5
MA0157.10.125
MA0159.10.0279
MA0160.10.0886
MA0162.10.019
MA0163.10.761
MA0164.10.247
MA0258.10.108
MA0259.10.864



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10863

Novel motifP-value
10.445
100.871
1000.63
1010.832
1020.00608
1030.871
1040.917
1050.881
1060.0487
1070.286
1080.152
1090.867
110.894
1100.37
1110.288
1120.246
1130.382
1140.985
1150.504
1160.198
1170.774
1180.179
1190.82
120.158
1200.981
1210.94
1220.00563
1239.16613e-4
1240.708
1250.903
1260.673
1270.152
1280.655
1290.889
130.683
1300.0107
1310.08
1320.322
1330.121
1340.0471
1350.185
1360.672
1370.0161
1380.197
1390.0918
140.284
1400.129
1410.0477
1420.431
1430.196
1440.584
1450.518
1460.0536
1470.324
1480.154
1490.585
150.241
1500.554
1510.457
1520.748
1530.748
1540.164
1550.0038
1560.239
1570.197
1580.00635
1590.0691
160.752
1600.971
1610.821
1620.244
1630.96
1640.0326
1650.548
1660.111
1670.992
1680.37
1690.318
170.992
180.691
190.0693
20.933
200.656
210.954
220.39
230.317
240.546
250.258
260.443
270.707
280.118
290.477
30.709
300.21
310.693
322.17427e-5
330.147
340.785
350.29
360.813
370.507
380.399
390.336
40.0128
400.792
410.0235
420.931
430.166
440.861
450.304
460.148
470.816
480.94
490.0399
50.729
500.619
510.477
520.858
530.056
540.91
550.787
560.909
570.772
580.0419
590.648
60.908
600.0637
610.804
620.0487
630.537
640.454
650.748
660.202
670.663
680.171
690.866
70.616
700.155
710.569
720.423
730.507
740.495
750.624
760.85
770.759
780.922
790.397
80.411
800.886
810.718
820.0463
830.412
840.969
850.821
860.483
870.336
880.691
890.602
90.994
900.726
910.969
920.151
930.818
940.423
950.889
960.212
970.306
980.737
992.94251e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10863


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002590 (smooth muscle cell of the brain vasculature)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0002049 (vasculature)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001016 (nervous system)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000170 (human smooth muscle cell of the brain vasculature sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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