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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005828
|DRA_sample_Accession=CAGE@SAMD00005828
|accession_numbers=CAGE;DRX008034;DRR008906;DRZ000331;DRZ001716
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005828
|accession_numbers=CAGE;DRX008034;DRR008906;DRZ000331;DRZ001716;DRZ011681;DRZ013066
|accession_numbers_RNASeq=sRNA-Seq;DRX036988;DRR041354;DRZ006996
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
Line 64: Line 66:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=fractionations and perturbations
Line 102: Line 105:
|top_motifs=EN1,2:2.50636393251;ALX4:2.41201517532;TAL1_TCF{3,4,12}:2.32348209803;XBP1:2.25880822024;HIF1A:2.1534338928;NKX3-1:2.11716130093;MYBL2:2.0648902996;ESR1:1.98597532661;HOX{A5,B5}:1.90440291481;UFEwm:1.78699163606;HMX1:1.78229946014;EVI1:1.76957610503;TEAD1:1.61826354389;IKZF1:1.57366762766;EBF1:1.5635909017;GLI1..3:1.54380831069;GCM1,2:1.44275861548;RXR{A,B,G}:1.32269200995;NKX2-1,4:1.2703263704;TLX1..3_NFIC{dimer}:1.26709106059;TLX2:1.26139263158;RXRA_VDR{dimer}:1.25258042331;KLF4:1.23470211418;HOX{A4,D4}:1.2038458059;EP300:1.17778570664;ATF6:1.17348263083;PRDM1:1.15393255138;HMGA1,2:1.14126368406;SOX17:1.13929698489;NFE2L1:1.13441524406;HSF1,2:1.07528265069;GTF2A1,2:0.991714955517;MTE{core}:0.990392342127;GTF2I:0.987554625812;FOXL1:0.980180653158;NANOG{mouse}:0.964992123683;POU3F1..4:0.934727039176;MAZ:0.910105010875;SMAD1..7,9:0.903184975728;MAFB:0.897107148587;GATA4:0.890875484393;MZF1:0.890082395715;TP53:0.867569480587;ZNF384:0.835741075602;AHR_ARNT_ARNT2:0.83456809888;MYFfamily:0.798166373447;XCPE1{core}:0.786525500574;ZIC1..3:0.779906987746;SPZ1:0.776006336841;GZF1:0.758557206163;GFI1B:0.754664519726;PAX1,9:0.746525308545;ZNF423:0.683339585445;TOPORS:0.64810772007;CDC5L:0.642666582208;NR3C1:0.640608909855;SP1:0.630935571608;SRF:0.607979983234;SREBF1,2:0.603483722181;STAT1,3:0.586735982249;bHLH_family:0.580254265118;RREB1:0.571388449881;PATZ1:0.567237798328;LHX3,4:0.553717681439;NFATC1..3:0.549121577343;TEF:0.527789387678;HLF:0.523524089107;ELK1,4_GABP{A,B1}:0.522266425258;TFAP4:0.521369333126;SOX2:0.517718273655;ZNF238:0.512553004839;ZNF143:0.499830830393;NRF1:0.472012734842;MED-1{core}:0.459136771121;PAX5:0.426762428233;AIRE:0.421394979547;HOX{A6,A7,B6,B7}:0.412645951948;ZBTB6:0.409875734713;GFI1:0.386080329137;PAX4:0.383561009611;MYB:0.376004552641;CREB1:0.310302158382;STAT2,4,6:0.30927061486;PAX3,7:0.259348484068;NKX3-2:0.258693243473;CEBPA,B_DDIT3:0.258123624661;DBP:0.22165016237;HES1:0.201744449254;FOXN1:0.196165224658;NFY{A,B,C}:0.191350697424;TFAP2B:0.17534783734;ZFP161:0.171096007086;FOSL2:0.154988933599;AR:0.152090284727;PAX8:0.15022639386;NKX2-2,8:0.127251774739;RFX1:0.122456168773;PAX2:0.122303970593;ARID5B:0.121381074845;ADNP_IRX_SIX_ZHX:0.108992558294;HIC1:0.0870361423493;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0846763832379;ZNF148:0.084549131163;TBX4,5:0.0801737171224;BPTF:0.0760568901477;ZBTB16:0.0633241668797;NHLH1,2:0.0507562370892;NFE2L2:0.036328081737;TFAP2{A,C}:0.0267379030765;FOXP1:0.0165204446476;FOXD3:0.00152431110469;FOS_FOS{B,L1}_JUN{B,D}:-0.0100085489528;YY1:-0.0136147090772;ATF5_CREB3:-0.0173634579613;E2F1..5:-0.0381345098384;TFDP1:-0.0455427280598;BACH2:-0.046350975426;ATF4:-0.0648868197166;SOX{8,9,10}:-0.0727766165302;HNF1A:-0.0919281262238;HBP1_HMGB_SSRP1_UBTF:-0.0923879918441;FOXO1,3,4:-0.097551070688;IRF1,2:-0.152182050798;NFIX:-0.187396905474;ELF1,2,4:-0.194132976412;NFE2:-0.224872936905;POU1F1:-0.235652944757;VSX1,2:-0.245322462562;ATF2:-0.264713774047;NR1H4:-0.271085546371;RUNX1..3:-0.281514328598;POU5F1:-0.311374292206;TBP:-0.339633824189;PPARG:-0.340669160887;IRF7:-0.342576106251;EGR1..3:-0.353527392585;LEF1_TCF7_TCF7L1,2:-0.366543267477;FOX{D1,D2}:-0.371981987978;HOXA9_MEIS1:-0.394284364151;MEF2{A,B,C,D}:-0.406933377512;HAND1,2:-0.420752951893;ONECUT1,2:-0.422119570795;LMO2:-0.432798238996;ALX1:-0.434640303799;SPI1:-0.469107883785;HNF4A_NR2F1,2:-0.470043721704;SOX5:-0.482765723459;TGIF1:-0.493909737214;CDX1,2,4:-0.496032706119;RBPJ:-0.518726779234;TFCP2:-0.529194007758;GATA6:-0.542168971304;NFKB1_REL_RELA:-0.545456060932;REST:-0.579096335677;PAX6:-0.633571826347;ETS1,2:-0.646542121882;FOXA2:-0.650382380163;SPIB:-0.679592352245;NFIL3:-0.743714730979;NR6A1:-0.754445595014;FOX{I1,J2}:-0.781462657878;PITX1..3:-0.817529884657;BREu{core}:-0.862756975991;NKX6-1,2:-0.874268866378;FOXP3:-0.876446212368;PBX1:-0.881021006717;MTF1:-0.885342344658;CRX:-0.933738955043;POU6F1:-0.998345891869;JUN:-1.00118645749;RFX2..5_RFXANK_RFXAP:-1.03660078638;ESRRA:-1.05407514195;DMAP1_NCOR{1,2}_SMARC:-1.05679546644;SNAI1..3:-1.11271379249;ZEB1:-1.19306389847;NANOG:-1.2286190027;STAT5{A,B}:-1.30387882031;NKX2-3_NKX2-5:-1.36109052085;PRRX1,2:-1.38384588557;CUX2:-1.38920767702;NR5A1,2:-1.39283412505;POU2F1..3:-1.44419157472;OCT4_SOX2{dimer}:-1.4691240292;IKZF2:-1.47391223327;MYOD1:-1.48704947604;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56113208187;FOX{F1,F2,J1}:-1.6402652683;RORA:-1.70047037866;FOXM1:-1.86232708379;PDX1:-1.87014265199;T:-2.46593517676;FOXQ1:-2.57385225708
|top_motifs=EN1,2:2.50636393251;ALX4:2.41201517532;TAL1_TCF{3,4,12}:2.32348209803;XBP1:2.25880822024;HIF1A:2.1534338928;NKX3-1:2.11716130093;MYBL2:2.0648902996;ESR1:1.98597532661;HOX{A5,B5}:1.90440291481;UFEwm:1.78699163606;HMX1:1.78229946014;EVI1:1.76957610503;TEAD1:1.61826354389;IKZF1:1.57366762766;EBF1:1.5635909017;GLI1..3:1.54380831069;GCM1,2:1.44275861548;RXR{A,B,G}:1.32269200995;NKX2-1,4:1.2703263704;TLX1..3_NFIC{dimer}:1.26709106059;TLX2:1.26139263158;RXRA_VDR{dimer}:1.25258042331;KLF4:1.23470211418;HOX{A4,D4}:1.2038458059;EP300:1.17778570664;ATF6:1.17348263083;PRDM1:1.15393255138;HMGA1,2:1.14126368406;SOX17:1.13929698489;NFE2L1:1.13441524406;HSF1,2:1.07528265069;GTF2A1,2:0.991714955517;MTE{core}:0.990392342127;GTF2I:0.987554625812;FOXL1:0.980180653158;NANOG{mouse}:0.964992123683;POU3F1..4:0.934727039176;MAZ:0.910105010875;SMAD1..7,9:0.903184975728;MAFB:0.897107148587;GATA4:0.890875484393;MZF1:0.890082395715;TP53:0.867569480587;ZNF384:0.835741075602;AHR_ARNT_ARNT2:0.83456809888;MYFfamily:0.798166373447;XCPE1{core}:0.786525500574;ZIC1..3:0.779906987746;SPZ1:0.776006336841;GZF1:0.758557206163;GFI1B:0.754664519726;PAX1,9:0.746525308545;ZNF423:0.683339585445;TOPORS:0.64810772007;CDC5L:0.642666582208;NR3C1:0.640608909855;SP1:0.630935571608;SRF:0.607979983234;SREBF1,2:0.603483722181;STAT1,3:0.586735982249;bHLH_family:0.580254265118;RREB1:0.571388449881;PATZ1:0.567237798328;LHX3,4:0.553717681439;NFATC1..3:0.549121577343;TEF:0.527789387678;HLF:0.523524089107;ELK1,4_GABP{A,B1}:0.522266425258;TFAP4:0.521369333126;SOX2:0.517718273655;ZNF238:0.512553004839;ZNF143:0.499830830393;NRF1:0.472012734842;MED-1{core}:0.459136771121;PAX5:0.426762428233;AIRE:0.421394979547;HOX{A6,A7,B6,B7}:0.412645951948;ZBTB6:0.409875734713;GFI1:0.386080329137;PAX4:0.383561009611;MYB:0.376004552641;CREB1:0.310302158382;STAT2,4,6:0.30927061486;PAX3,7:0.259348484068;NKX3-2:0.258693243473;CEBPA,B_DDIT3:0.258123624661;DBP:0.22165016237;HES1:0.201744449254;FOXN1:0.196165224658;NFY{A,B,C}:0.191350697424;TFAP2B:0.17534783734;ZFP161:0.171096007086;FOSL2:0.154988933599;AR:0.152090284727;PAX8:0.15022639386;NKX2-2,8:0.127251774739;RFX1:0.122456168773;PAX2:0.122303970593;ARID5B:0.121381074845;ADNP_IRX_SIX_ZHX:0.108992558294;HIC1:0.0870361423493;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0846763832379;ZNF148:0.084549131163;TBX4,5:0.0801737171224;BPTF:0.0760568901477;ZBTB16:0.0633241668797;NHLH1,2:0.0507562370892;NFE2L2:0.036328081737;TFAP2{A,C}:0.0267379030765;FOXP1:0.0165204446476;FOXD3:0.00152431110469;FOS_FOS{B,L1}_JUN{B,D}:-0.0100085489528;YY1:-0.0136147090772;ATF5_CREB3:-0.0173634579613;E2F1..5:-0.0381345098384;TFDP1:-0.0455427280598;BACH2:-0.046350975426;ATF4:-0.0648868197166;SOX{8,9,10}:-0.0727766165302;HNF1A:-0.0919281262238;HBP1_HMGB_SSRP1_UBTF:-0.0923879918441;FOXO1,3,4:-0.097551070688;IRF1,2:-0.152182050798;NFIX:-0.187396905474;ELF1,2,4:-0.194132976412;NFE2:-0.224872936905;POU1F1:-0.235652944757;VSX1,2:-0.245322462562;ATF2:-0.264713774047;NR1H4:-0.271085546371;RUNX1..3:-0.281514328598;POU5F1:-0.311374292206;TBP:-0.339633824189;PPARG:-0.340669160887;IRF7:-0.342576106251;EGR1..3:-0.353527392585;LEF1_TCF7_TCF7L1,2:-0.366543267477;FOX{D1,D2}:-0.371981987978;HOXA9_MEIS1:-0.394284364151;MEF2{A,B,C,D}:-0.406933377512;HAND1,2:-0.420752951893;ONECUT1,2:-0.422119570795;LMO2:-0.432798238996;ALX1:-0.434640303799;SPI1:-0.469107883785;HNF4A_NR2F1,2:-0.470043721704;SOX5:-0.482765723459;TGIF1:-0.493909737214;CDX1,2,4:-0.496032706119;RBPJ:-0.518726779234;TFCP2:-0.529194007758;GATA6:-0.542168971304;NFKB1_REL_RELA:-0.545456060932;REST:-0.579096335677;PAX6:-0.633571826347;ETS1,2:-0.646542121882;FOXA2:-0.650382380163;SPIB:-0.679592352245;NFIL3:-0.743714730979;NR6A1:-0.754445595014;FOX{I1,J2}:-0.781462657878;PITX1..3:-0.817529884657;BREu{core}:-0.862756975991;NKX6-1,2:-0.874268866378;FOXP3:-0.876446212368;PBX1:-0.881021006717;MTF1:-0.885342344658;CRX:-0.933738955043;POU6F1:-0.998345891869;JUN:-1.00118645749;RFX2..5_RFXANK_RFXAP:-1.03660078638;ESRRA:-1.05407514195;DMAP1_NCOR{1,2}_SMARC:-1.05679546644;SNAI1..3:-1.11271379249;ZEB1:-1.19306389847;NANOG:-1.2286190027;STAT5{A,B}:-1.30387882031;NKX2-3_NKX2-5:-1.36109052085;PRRX1,2:-1.38384588557;CUX2:-1.38920767702;NR5A1,2:-1.39283412505;POU2F1..3:-1.44419157472;OCT4_SOX2{dimer}:-1.4691240292;IKZF2:-1.47391223327;MYOD1:-1.48704947604;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56113208187;FOX{F1,F2,J1}:-1.6402652683;RORA:-1.70047037866;FOXM1:-1.86232708379;PDX1:-1.87014265199;T:-2.46593517676;FOXQ1:-2.57385225708
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14311-155C9;search_select_hide=table117:FF:14311-155C9
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12400
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage19 years old adult
sexfemale
age19
cell typefibroblast
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005828
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12400 CAGE DRX008034 DRR008906
Accession ID Hg19

Library idBAMCTSS
CNhs12400 DRZ000331 DRZ001716
Accession ID Hg38

Library idBAMCTSS
CNhs12400 DRZ011681 DRZ013066
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005828
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.GGTAGC sRNA-Seq DRX036988 DRR041354
Accession ID Hg19

Library idBAMCTSS
SRhi10015.GGTAGC DRZ006996


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.329
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.269
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.518
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.116
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.357
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.769
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0473
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.11
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.181
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.135
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.109
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.233
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.11
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0387
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0914
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.11
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0466
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.131
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.197
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.125
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.912
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.942
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.7
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.129
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.11
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.347
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0.11
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12400

Jaspar motifP-value
MA0002.20.00303
MA0003.10.85
MA0004.10.31
MA0006.10.881
MA0007.10.496
MA0009.10.159
MA0014.10.424
MA0017.10.00314
MA0018.20.251
MA0019.10.659
MA0024.10.739
MA0025.10.0403
MA0027.10.957
MA0028.10.764
MA0029.10.526
MA0030.10.397
MA0031.10.139
MA0035.20.059
MA0038.10.471
MA0039.20.345
MA0040.10.885
MA0041.10.565
MA0042.10.549
MA0043.10.128
MA0046.10.0544
MA0047.20.694
MA0048.10.181
MA0050.10.16
MA0051.10.276
MA0052.10.133
MA0055.10.764
MA0057.10.472
MA0058.10.252
MA0059.10.0679
MA0060.10.296
MA0061.17.72175e-4
MA0062.20.189
MA0065.23.8354e-4
MA0066.10.418
MA0067.10.366
MA0068.10.921
MA0069.10.487
MA0070.10.454
MA0071.10.189
MA0072.10.205
MA0073.10.752
MA0074.10.765
MA0076.10.456
MA0077.10.485
MA0078.10.691
MA0079.20.918
MA0080.21.74864e-9
MA0081.10.0395
MA0083.10.233
MA0084.10.159
MA0087.10.535
MA0088.10.326
MA0090.10.00508
MA0091.10.557
MA0092.10.438
MA0093.10.39
MA0099.20.00284
MA0100.10.892
MA0101.10.0051
MA0102.20.488
MA0103.13.41037e-4
MA0104.20.0316
MA0105.14.93609e-6
MA0106.10.931
MA0107.10.00316
MA0108.20.774
MA0111.10.344
MA0112.20.273
MA0113.10.701
MA0114.10.0061
MA0115.10.0272
MA0116.10.393
MA0117.10.637
MA0119.10.844
MA0122.10.394
MA0124.10.0107
MA0125.10.293
MA0131.10.642
MA0135.10.437
MA0136.11.51923e-9
MA0137.20.544
MA0138.20.0915
MA0139.10.816
MA0140.10.131
MA0141.10.0168
MA0142.10.0543
MA0143.10.517
MA0144.10.804
MA0145.10.333
MA0146.10.058
MA0147.10.12
MA0148.10.219
MA0149.10.214
MA0150.10.0325
MA0152.10.0412
MA0153.10.677
MA0154.10.0796
MA0155.10.675
MA0156.10.00197
MA0157.10.0903
MA0159.10.25
MA0160.10.00306
MA0162.10.287
MA0163.10.833
MA0164.10.711
MA0258.10.131
MA0259.10.379



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12400

Novel motifP-value
10.0759
100.338
1000.929
1010.405
1020.358
1030.372
1040.994
1050.0536
1060.0131
1070.607
1080.591
1090.119
110.145
1100.803
1110.0193
1120.42
1130.0483
1140.103
1150.098
1160.912
1170.354
1180.44
1190.0738
120.416
1200.965
1210.93
1220.061
1230.00559
1240.0348
1250.174
1260.203
1270.0217
1280.0424
1290.213
130.335
1300.974
1310.893
1320.503
1330.853
1340.866
1350.312
1360.896
1370.564
1380.419
1390.175
140.348
1400.485
1410.783
1420.649
1430.0394
1440.809
1450.309
1460.459
1470.191
1480.0503
1490.279
150.0716
1500.82
1510.21
1520.173
1530.328
1540.902
1550.0406
1560.119
1570.562
1580.0583
1590.937
160.917
1600.0456
1610.742
1620.949
1630.718
1640.387
1650.724
1660.036
1670.192
1680.207
1690.425
170.461
180.553
190.602
20.624
200.864
210.899
220.662
230.756
240.199
250.0994
260.971
270.342
280.58
290.694
30.301
300.745
310.806
326.61488e-10
330.604
340.741
350.27
360.0137
370.404
380.225
390.919
40.135
400.0525
410.0442
420.146
430.234
440.792
450.48
460.323
470.155
480.402
490.0481
50.373
500.943
510.28
520.351
530.144
540.439
550.679
560.243
570.364
580.123
590.352
60.833
600.152
610.22
620.0609
630.488
640.182
650.255
660.244
670.814
680.584
690.589
70.0864
700.0575
710.398
720.355
730.201
740.422
750.287
760.701
770.717
780.0248
790.0714
80.204
800.187
810.431
820.0906
830.0537
840.558
850.391
860.784
870.838
880.522
890.652
90.9
900.0337
910.538
920.55
930.286
940.127
950.104
960.0426
970.258
980.00615
990.501



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12400


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000058 (human fibroblast of the aortic adventitia sample)
0000406 (nuclear fraction sample)
0000666 (human Fibroblast - Aortic Adventitial, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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