FFCP PHASE1:Hg19::chr12:6493319..6493405,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:6493319..6493405,+ to FFCP PHASE1:Hg19::chr12:6493319..6493405,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4055 | |EntrezGene=4055 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6718 | |HGNC=6718 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6F8,B3KTD9,P36941 | |UniProt=F5H6F8,B3KTD9,P36941 | ||
|association_with_transcript=0bp_to_ENST00000535739,ENST00000536876,ENST00000540343,NM_002342,uc001qny.1,uc001qnz.1_5end | |||
|cluster_id=chr12:6493319..6493405,+ | |||
|description=CAGE_peak_1_at_LTBR_5end | |||
|id=chr12:6493319..6493405,+ | |||
|ontology_enrichment_celltype=CL:0000548!7.34e-19!679;CL:0000004!7.34e-19!679;CL:0000255!7.34e-19!679;CL:0000012!2.28e-18!682;CL:0002371!3.04e-16!591;CL:0000144!1.17e-15!625;CL:0000063!3.27e-15!578;CL:0000066!2.52e-12!254;CL:0000222!1.63e-10!119;CL:0000220!2.52e-10!246;CL:0002321!9.61e-10!248;CL:0000003!1.03e-08!722;CL:0000183!4.23e-07!59;CL:0000057!4.29e-07!75;CL:0002194!7.88e-07!63;CL:0000576!7.88e-07!63;CL:0000040!7.88e-07!63;CL:0000559!7.88e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.11e-07;39!CL:0000234;1.11e-07;39!CL:0000860;1.87e-07;33!CL:0002057;1.87e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.86e-12,253;CL:0000222,6.27e-11,121;CL:0002321,6.53e-10,250;CL:0000473,4.80e-08,48;CL:0000234,4.80e-08,48;CL:0002194,2.91e-07,59;CL:0000576,2.91e-07,59;CL:0000040,2.91e-07,59;CL:0000559,2.91e-07,59;CL:0000057,3.72e-07,76;CL:0002009,6.87e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!6.35e-22!448;UBERON:0004120!6.35e-22!448;UBERON:0006603!6.35e-22!448;UBERON:0000468!4.40e-13!659;UBERON:0002100!8.82e-13!216;UBERON:0000467!3.25e-11!625;UBERON:0000480!6.63e-11!626;UBERON:0002204!8.13e-11!167;UBERON:0003104!1.24e-10!238;UBERON:0009142!1.24e-10!238;UBERON:0005256!1.51e-10!143;UBERON:0004119!2.34e-10!169;UBERON:0000925!2.34e-10!169;UBERON:0006595!2.34e-10!169;UBERON:0000923!5.61e-10!604;UBERON:0005291!5.61e-10!604;UBERON:0006598!5.61e-10!604;UBERON:0002532!5.61e-10!604;UBERON:0002050!7.01e-10!605;UBERON:0005423!7.01e-10!605;UBERON:0003081!2.10e-09!216;UBERON:0003102!4.71e-09!95;UBERON:0003914!1.20e-08!118;UBERON:0000922!1.21e-08!612;UBERON:0000466!4.35e-08!126;UBERON:0000486!4.39e-08!82;UBERON:0000490!6.02e-08!138;UBERON:0001007!5.89e-07!155;UBERON:0001555!5.89e-07!155;UBERON:0007026!5.89e-07!155;UBERON:0009569!8.17e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,5.68e-15,315;UBERON:0004120,5.68e-15,315;UBERON:0006603,5.68e-15,315;UBERON:0002100,2.52e-12,199;UBERON:0002204,5.52e-12,167;UBERON:0003104,1.44e-09,160;UBERON:0009142,1.44e-09,160;UBERON:0003102,1.67e-09,99;UBERON:0005256,2.16e-09,122;UBERON:0004119,2.64e-09,160;UBERON:0000925,2.64e-09,160;UBERON:0006595,2.64e-09,160;UBERON:0003081,6.12e-09,203;UBERON:0003914,1.35e-08,117;UBERON:0000490,1.57e-08,148;UBERON:0000486,3.70e-08,83;UBERON:0002050,4.08e-08,564;UBERON:0000923,4.87e-08,560;UBERON:0010316,4.87e-08,560;UBERON:0005291,4.87e-08,560;UBERON:0006598,4.87e-08,560;UBERON:0010317,4.87e-08,560;UBERON:0002532,4.87e-08,560;UBERON:0005423,4.95e-08,581;UBERON:0007503,5.48e-08,78;UBERON:0000922,5.31e-07,592 | |||
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| ||
|short_description=p1@LTBR | |||
}} | }} |
Latest revision as of 21:02, 19 September 2015
Short description: | p1@LTBR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LTBR_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000535739, ENST00000536876, ENST00000540343, NM_002342, uc001qny.1, uc001qnz.1_5end |
EntrezGene: | LTBR |
HGNC: | 6718 |
UniProt: | F5H6F8B3KTD9P36941 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.86e-12 | 253 |
mesodermal cell | 6.27e-11 | 121 |
embryonic cell | 6.53e-10 | 250 |
defensive cell | 4.80e-08 | 48 |
phagocyte | 4.80e-08 | 48 |
monopoietic cell | 2.91e-07 | 59 |
monocyte | 2.91e-07 | 59 |
monoblast | 2.91e-07 | 59 |
promonocyte | 2.91e-07 | 59 |
fibroblast | 3.72e-07 | 76 |
macrophage dendritic cell progenitor | 6.87e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 5.68e-15 | 315 |
mesoderm-derived structure | 5.68e-15 | 315 |
presumptive mesoderm | 5.68e-15 | 315 |
trunk | 2.52e-12 | 199 |
musculoskeletal system | 5.52e-12 | 167 |
mesenchyme | 1.44e-09 | 160 |
entire embryonic mesenchyme | 1.44e-09 | 160 |
surface structure | 1.67e-09 | 99 |
trunk mesenchyme | 2.16e-09 | 122 |
endoderm-derived structure | 2.64e-09 | 160 |
endoderm | 2.64e-09 | 160 |
presumptive endoderm | 2.64e-09 | 160 |
lateral plate mesoderm | 6.12e-09 | 203 |
epithelial tube | 1.35e-08 | 117 |
unilaminar epithelium | 1.57e-08 | 148 |
multilaminar epithelium | 3.70e-08 | 83 |
embryonic structure | 4.08e-08 | 564 |
germ layer | 4.87e-08 | 560 |
germ layer / neural crest | 4.87e-08 | 560 |
embryonic tissue | 4.87e-08 | 560 |
presumptive structure | 4.87e-08 | 560 |
germ layer / neural crest derived structure | 4.87e-08 | 560 |
epiblast (generic) | 4.87e-08 | 560 |
developing anatomical structure | 4.95e-08 | 581 |
epithelial vesicle | 5.48e-08 | 78 |
embryo | 5.31e-07 | 592 |