FFCP PHASE1:Hg19::chr13:49107303..49107349,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:49107303..49107349,- to FFCP PHASE1:Hg19::chr13:49107303..49107349,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1102 | |EntrezGene=1102 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1914 | |HGNC=1914 | ||
|TSSclassifier=strong | |||
|UniProt=O95199 | |UniProt=O95199 | ||
|association_with_transcript=0bp_to_ENST00000481144,NM_001268,uc001vch.2,uc001vci.2,uc010acv.1,uc010tgg.1,uc010tgh.1,uc010tgi.1_5end | |||
|cluster_id=chr13:49107303..49107349,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_3_at_RCBTB2_5end | |||
|id=chr13:49107303..49107349,- | |||
|ontology_enrichment_celltype=CL:0000047!4.55e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000540;3.70e-10;6!CL:0000404;3.70e-10;6!CL:0002322;1.80e-08;5!CL:0002321;2.36e-08;15!CL:0000235;4.26e-08;6!CL:0002319;6.06e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.76e-13,8;CL:0000540,3.55e-10,6;CL:0000031,3.55e-10,6;CL:0000404,3.55e-10,6;CL:0000133,1.21e-08,59;CL:0002322,1.75e-08,5;CL:0002319,3.08e-08,25;CL:0000235,7.84e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000031;3.70e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;2.85e-07;22!DOID:2994;2.85e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.39e-07,22;DOID:2994,2.39e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.08e-19!94;UBERON:0001016!1.08e-19!94;UBERON:0001017!3.13e-19!82;UBERON:0005743!2.06e-18!86;UBERON:0001049!2.07e-14!57;UBERON:0005068!2.07e-14!57;UBERON:0006241!2.07e-14!57;UBERON:0007135!2.07e-14!57;UBERON:0002346!1.24e-13!90;UBERON:0002616!7.71e-13!59;UBERON:0000955!1.03e-12!69;UBERON:0006238!1.03e-12!69;UBERON:0003075!4.09e-12!86;UBERON:0007284!4.09e-12!86;UBERON:0002780!2.29e-11!41;UBERON:0001890!2.29e-11!41;UBERON:0006240!2.29e-11!41;UBERON:0003080!1.03e-10!42;UBERON:0000924!5.10e-10!173;UBERON:0006601!5.10e-10!173;UBERON:0001893!6.91e-10!34;UBERON:0002020!1.03e-09!34;UBERON:0003528!1.03e-09!34;UBERON:0002791!1.60e-09!33;UBERON:0001869!1.62e-09!32;UBERON:0003056!4.27e-09!61;UBERON:0004121!6.58e-09!169;UBERON:0000153!8.24e-08!129;UBERON:0007811!8.24e-08!129;UBERON:0007023!4.42e-07!115;UBERON:0000956!4.46e-07!25;UBERON:0000203!4.46e-07!25;UBERON:0000033!8.82e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.33e-20;49!UBERON:0001869;1.95e-09;32!UBERON:0001893;2.67e-09;34!UBERON:0002791;5.28e-09;32!UBERON:0003528;9.32e-09;34!UBERON:0002020;9.32e-09;34!UBERON:0001017;6.75e-08;75!UBERON:0001016;1.13e-07;83!UBERON:0000956;3.03e-07;25!UBERON:0000203;3.03e-07;25!UBERON:0002780;4.12e-07;41!UBERON:0001890;4.12e-07;41!UBERON:0000955;6.55e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.26e-22,89;UBERON:0001017,1.47e-20,81;UBERON:0002346,2.20e-13,86;UBERON:0001049,5.39e-13,56;UBERON:0005068,5.39e-13,56;UBERON:0006241,5.39e-13,56;UBERON:0007135,5.39e-13,56;UBERON:0004121,7.16e-13,171;UBERON:0000924,7.16e-13,171;UBERON:0006601,7.16e-13,171;UBERON:0003075,2.25e-12,82;UBERON:0007284,2.25e-12,82;UBERON:0000955,5.75e-11,68;UBERON:0006238,5.75e-11,68;UBERON:0000073,9.72e-11,53;UBERON:0002616,9.72e-11,53;UBERON:0001893,1.47e-10,34;UBERON:0001869,2.73e-10,32;UBERON:0003056,4.01e-10,61;UBERON:0011216,5.40e-10,223;UBERON:0002780,6.59e-10,41;UBERON:0001890,6.59e-10,41;UBERON:0003080,6.59e-10,41;UBERON:0006240,6.59e-10,41;UBERON:0003528,1.52e-09,34;UBERON:0002020,1.52e-09,34;UBERON:0002791,3.33e-09,32;UBERON:0010371,3.65e-09,104;UBERON:0000956,2.63e-07,25;UBERON:0000203,2.63e-07,25;UBERON:0000922,3.72e-07,592 | |||
|phase1_expression=0.908391896352783,0.428201047781966,0.563817616383885,0,0.893922188854576,0,0,0,0.783556884599516,0,0,0.218441372130172,0,0.74259811776028,0.994192127183747,0,0.602694528023977,0,0,1.96993692922861,0.204000691244253,0.626909442956176,4.00730381983479,1.91624195102038,1.63205431473244,0,0,0.0787107813136792,0.786728553697808,0,0.464448369948228,0,0,0,0.46480320348181,0.426507697462265,0.880801318004542,0,0.200544447470142,0.217010870715852,0.671746422719773,0.32389366601898,0.77272670290256,1.89017710413434,0.377875943688809,2.42584061187816,0.697287110717054,0.411167888021826,1.23882548358041,0,0,0.945928919554341,0.689491361473237,1.93645405075148,0,0.752969358170419,1.09162460023138,0.449446968890169,0,0.320929027076094,0.639337125799041,4.61791820261403,1.59570926097305,1.70489900213078,0.580418477257168,0,0,0,0.521482918420201,0.65156653411535,1.21079900526674,0.368277635987565,0,0.633765858935825,0,0.209658645508376,0.673971786878971,0.600707571366025,0.803627933485401,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,0,0,0,0.205601498999509,0.167186495390678,0,0.473447805734733,0,0.111410456885174,0,0.443067789167242,0.812411591295047,0.25618263945135,0.260118695119756,0.657751618414705,0.276350017785848,0.289803085735052,0.593146252648242,0,0,1.13309342697566,0.383220493601921,0,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0.255973222308837,0,0,0.821127996921047,0.201606743224732,0,0.144824403882799,0,0,0,0,1.00267582127178,0.434539556882471,0,0.486634870302636,2.3633704291017,1.77383517970051,2.3715392137144,1.57174890597255,0,0,0.97364218096405,0.696518949197069,1.06366368415092,0,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0.66944122552934,0,0,0.488124115096339,0,0,0.357198913136319,0,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0.397227542439656,0.286836620748814,0,0,0,0.24666754841716,0.933633106199299,0.134710672069688,0.163461903113459,1.05950199351452,2.30470369792,0,0,0,0.149448680551801,0.117434498643765,0,0,0.204154171254893,0.122834317311768,0.206651562351531,0,0.247266929278557,0,0,0,0.250237039743928,0,0.438977620880838,0,0,0.340296549480063,0.179389635688862,0.427114777637135,0.211931901159562,0.300091096084402,0.309157587715317,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0,0.276149695926898,0.323292113637624,0.355009592516614,0.201504196455281,0.169560592310488,0,0,0,4.63500083292463,5.30119073285941,6.85544262930159,7.87824018116815,4.79409616663694,3.6497735907583,0,0.643240938192885,0,0,0,0.354920400119532,0.168584690078102,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,1.03993478527958,1.44331342025273,1.04337364477569,1.40890433082986,0,0,0,0,0,1.23108503043699,3.97807250736704,2.22946743433092,0,0,0,0.0895585227028483,0,0,0,0.088048434013226,0,0.288239906833923,0,0.253991577168676,0,0,0,0.102827492703324,0.600686115687835,0,0.784917590417525,1.74384027533312,0.22001485746285,0.258543431515556,0,0,0,0,0.771622122786426,0,0,0,0,0,0,0,0.791951872933429,0,0,0.199945982364114,1.2162378064119,2.00902836572851,2.10833939483032,0.718874566474748,0,1.42636905040718,0.434343920002738,0.205476322550383,0,2.4658731678576,0,0.215627574859517,0.641715181398742,4.8277978602268,20.8223766172195,13.1459098172208,12.2286873694075,34.4486925892708,1.49801404789436,0,1.65766205374414,1.10422342547226,1.00034104211935,1.35632511849868,0.415941723061614,0,0.157702415033935,0,0.300946099727719,0,1.03473071292505,0,0,0.0868836144680828,1.17480694477644,2.40200396667599,0,0.215714200818617,0.106727557803444,0.303127571446259,0,0,0,0,0.561320188866147,0.512556597022804,0,0.321707842287215,0,0.308419387605311,0,0.164254312027618,0,0.348631135379878,0.120859449591622,0.200506470303285,0.184161977871793,0,0.182091168006717,0,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.656029291399411,0,0.206082023295445,0.0915694648183434,0,0,0,0,0.48335359146061,0.770243085573222,1.22802939780904,0.137836572484531,0.751941714077915,1.30515024522806,0.255679882248303,2.75999310504886,0,0,0.255225424989168,0,0,0.31481234683064,0,0.308033580176089,0,0,0,0.143124886741991,0,0,0.762520775695299,0,0,0.636406495851874,0,0.359744915166629,0.274537029736055,0.353437207037059,0,0,0,0,0,0,0.545999645631943,0.141405431953713,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0.354761064070598,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0.764637207142375,0.569647187174163,0.476463550915578,0.822724546172388,0.648473311192717,0,0,2.24330549367694,0.962479855263359,0,0.185803175125719,0.577076851905779,0.426851060090485,0,0.59873811429845,1.1490322207942,5.71518673354484,0.973865820823666,0.280797178113459,0.456469358066384,0,0,0.846458889008016,0.321176150207399,0.605399121573143,0,0,0,0.223676107892416,0.500547425135725,0.19538809540204,0.835218521685727,8.61611792633986,0.811367035427949,0.99921590399346,0,0,0.439524537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| ||
|short_description=p3@RCBTB2 | |||
}} | }} |
Latest revision as of 15:56, 17 September 2015
Short description: | p3@RCBTB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RCBTB2_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 0bp_to_ENST00000481144, NM_001268, uc001vch.2, uc001vci.2, uc010acv.1, uc010tgg.1, uc010tgh.1, uc010tgi.1_5end |
EntrezGene: | RCBTB2 |
HGNC: | 1914 |
UniProt: | O95199 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.76e-13 | 8 |
neuron | 3.55e-10 | 6 |
neuroblast | 3.55e-10 | 6 |
electrically signaling cell | 3.55e-10 | 6 |
neurectodermal cell | 1.21e-08 | 59 |
embryonic stem cell | 1.75e-08 | 5 |
neural cell | 3.08e-08 | 25 |
macrophage | 7.84e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.26e-22 | 89 |
central nervous system | 1.47e-20 | 81 |
neurectoderm | 2.20e-13 | 86 |
neural tube | 5.39e-13 | 56 |
neural rod | 5.39e-13 | 56 |
future spinal cord | 5.39e-13 | 56 |
neural keel | 5.39e-13 | 56 |
ectoderm-derived structure | 7.16e-13 | 171 |
ectoderm | 7.16e-13 | 171 |
presumptive ectoderm | 7.16e-13 | 171 |
neural plate | 2.25e-12 | 82 |
presumptive neural plate | 2.25e-12 | 82 |
brain | 5.75e-11 | 68 |
future brain | 5.75e-11 | 68 |
regional part of nervous system | 9.72e-11 | 53 |
regional part of brain | 9.72e-11 | 53 |
telencephalon | 1.47e-10 | 34 |
cerebral hemisphere | 2.73e-10 | 32 |
pre-chordal neural plate | 4.01e-10 | 61 |
organ system subdivision | 5.40e-10 | 223 |
regional part of forebrain | 6.59e-10 | 41 |
forebrain | 6.59e-10 | 41 |
anterior neural tube | 6.59e-10 | 41 |
future forebrain | 6.59e-10 | 41 |
brain grey matter | 1.52e-09 | 34 |
gray matter | 1.52e-09 | 34 |
regional part of telencephalon | 3.33e-09 | 32 |
ecto-epithelium | 3.65e-09 | 104 |
cerebral cortex | 2.63e-07 | 25 |
pallium | 2.63e-07 | 25 |
embryo | 3.72e-07 | 592 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.39e-07 | 22 |
germ cell cancer | 2.39e-07 | 22 |