FFCP PHASE1:Hg19::chr14:91526922..91527001,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:91526922..91527001,- to FFCP PHASE1:Hg19::chr14:91526922..91527001,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9252 | |EntrezGene=9252 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10434 | |HGNC=10434 | ||
|TSSclassifier=strong | |||
|UniProt=O75582,G3V2D1,G3V4D7,Q9UG98 | |UniProt=O75582,G3V2D1,G3V4D7,Q9UG98 | ||
|association_with_transcript=0bp_to_ENST00000261991,ENST00000418736,ENST00000554206,ENST00000556594,NM_004755,NM_182398,uc001xys.2,uc001xyt.2,uc010att.1_5end | |||
|cluster_id=chr14:91526922..91527001,- | |||
|coexpression_cluster_id=C2322 | |||
|description=CAGE_peak_1_at_RPS6KA5_5end | |||
|id=chr14:91526922..91527001,- | |||
|ontology_enrichment_celltype=CL:0000037!6.44e-23!172;CL:0000566!6.44e-23!172;CL:0002032!3.96e-22!165;CL:0000837!3.96e-22!165;CL:0000988!7.83e-20!182;CL:0000738!3.49e-19!140;CL:0002031!1.29e-15!124;CL:0000838!5.35e-14!52;CL:0002087!7.31e-14!119;CL:0000542!8.48e-14!53;CL:0000051!8.48e-14!53;CL:0000763!1.03e-09!112;CL:0000049!1.03e-09!112;CL:0000084!1.60e-08!25;CL:0000827!1.60e-08!25;CL:0000791!1.69e-08!18;CL:0000789!1.69e-08!18;CL:0002420!1.69e-08!18;CL:0002419!1.69e-08!18;CL:0000790!1.69e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000542;3.53e-09;53!CL:0000084;9.18e-09;25!CL:0000791;1.22e-08;18!CL:0000789;1.22e-08;18!CL:0002419;1.22e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.75e-23,168;CL:0002032,1.46e-22,161;CL:0000837,1.46e-22,161;CL:0000988,2.45e-20,177;CL:0000738,1.57e-19,136;CL:0002031,5.86e-16,120;CL:0000838,3.36e-14,52;CL:0002087,3.69e-14,115;CL:0000542,5.36e-14,53;CL:0000051,5.36e-14,53;CL:0000763,7.00e-10,108;CL:0000049,7.00e-10,108;CL:0000084,1.23e-08,25;CL:0000827,1.23e-08,25;CL:0000791,1.30e-08,18;CL:0000789,1.30e-08,18;CL:0002420,1.30e-08,18;CL:0002419,1.30e-08,18;CL:0000790,1.30e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000051;3.53e-09;53!CL:0000790;1.22e-08;18!UBERON:0006601;3.31e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.56e-32!115;UBERON:0001049!2.43e-17!57;UBERON:0005068!2.43e-17!57;UBERON:0006241!2.43e-17!57;UBERON:0007135!2.43e-17!57;UBERON:0003080!2.71e-14!42;UBERON:0002780!3.61e-14!41;UBERON:0001890!3.61e-14!41;UBERON:0006240!3.61e-14!41;UBERON:0000955!2.52e-12!69;UBERON:0006238!2.52e-12!69;UBERON:0001017!3.09e-12!82;UBERON:0002616!4.57e-12!59;UBERON:0002020!5.56e-12!34;UBERON:0003528!5.56e-12!34;UBERON:0001893!6.27e-12!34;UBERON:0002791!1.32e-11!33;UBERON:0005743!2.19e-11!86;UBERON:0001869!4.57e-11!32;UBERON:0000073!1.29e-10!94;UBERON:0001016!1.29e-10!94;UBERON:0002619!4.98e-09!22;UBERON:0001950!2.13e-08!20;UBERON:0002346!4.88e-08!90;UBERON:0000956!1.05e-07!25;UBERON:0000203!1.05e-07!25;UBERON:0003075!1.33e-07!86;UBERON:0007284!1.33e-07!86;UBERON:0002390!1.89e-07!102;UBERON:0003061!1.89e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.48e-11;41!UBERON:0001890;9.48e-11;41!UBERON:0003528;1.74e-10;34!UBERON:0002020;1.74e-10;34!UBERON:0001893;1.76e-10;34!UBERON:0002791;2.18e-10;32!UBERON:0001869;2.84e-10;32!UBERON:0000073;9.40e-10;53!UBERON:0002616;9.40e-10;53!UBERON:0002619;4.01e-09;22!UBERON:0007023;5.58e-09;114!UBERON:0001950;1.69e-08;20!UBERON:0000956;7.36e-08;25!UBERON:0000203;7.36e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.27e-32,114;UBERON:0001049,3.05e-17,56;UBERON:0005068,3.05e-17,56;UBERON:0006241,3.05e-17,56;UBERON:0007135,3.05e-17,56;UBERON:0000073,3.59e-16,53;UBERON:0002616,3.59e-16,53;UBERON:0002780,2.25e-14,41;UBERON:0001890,2.25e-14,41;UBERON:0003080,2.25e-14,41;UBERON:0006240,2.25e-14,41;UBERON:0000955,1.83e-12,68;UBERON:0006238,1.83e-12,68;UBERON:0001017,2.31e-12,81;UBERON:0003528,3.76e-12,34;UBERON:0002020,3.76e-12,34;UBERON:0001893,4.25e-12,34;UBERON:0001016,1.84e-11,89;UBERON:0002791,2.44e-11,32;UBERON:0001869,3.20e-11,32;UBERON:0002619,3.76e-09,22;UBERON:0001950,1.65e-08,20;UBERON:0002346,3.35e-08,86;UBERON:0000956,8.35e-08,25;UBERON:0000203,8.35e-08,25;UBERON:0003075,9.35e-08,82;UBERON:0007284,9.35e-08,82;UBERON:0002390,1.52e-07,98;UBERON:0003061,1.52e-07,98 | |||
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| ||
|short_description=p1@RPS6KA5 | |||
}} | }} |
Latest revision as of 12:54, 16 September 2015
Short description: | p1@RPS6KA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPS6KA5_5end |
Coexpression cluster: | C2322_Mast_Neutrophils_Eosinophils_granulocyte_cerebellum_Whole_CD4 |
Association with transcript: | 0bp_to_ENST00000261991, ENST00000418736, ENST00000554206, ENST00000556594, NM_004755, NM_182398, uc001xys.2, uc001xyt.2, uc010att.1_5end |
EntrezGene: | RPS6KA5 |
HGNC: | 10434 |
UniProt: | O75582G3V2D1G3V4D7Q9UG98 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.75e-23 | 168 |
hematopoietic oligopotent progenitor cell | 1.46e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.46e-22 | 161 |
hematopoietic cell | 2.45e-20 | 177 |
leukocyte | 1.57e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 5.86e-16 | 120 |
lymphoid lineage restricted progenitor cell | 3.36e-14 | 52 |
nongranular leukocyte | 3.69e-14 | 115 |
lymphocyte | 5.36e-14 | 53 |
common lymphoid progenitor | 5.36e-14 | 53 |
myeloid cell | 7.00e-10 | 108 |
common myeloid progenitor | 7.00e-10 | 108 |
T cell | 1.23e-08 | 25 |
pro-T cell | 1.23e-08 | 25 |
mature alpha-beta T cell | 1.30e-08 | 18 |
alpha-beta T cell | 1.30e-08 | 18 |
immature T cell | 1.30e-08 | 18 |
mature T cell | 1.30e-08 | 18 |
immature alpha-beta T cell | 1.30e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.27e-32 | 114 |
neural tube | 3.05e-17 | 56 |
neural rod | 3.05e-17 | 56 |
future spinal cord | 3.05e-17 | 56 |
neural keel | 3.05e-17 | 56 |
regional part of nervous system | 3.59e-16 | 53 |
regional part of brain | 3.59e-16 | 53 |
regional part of forebrain | 2.25e-14 | 41 |
forebrain | 2.25e-14 | 41 |
anterior neural tube | 2.25e-14 | 41 |
future forebrain | 2.25e-14 | 41 |
brain | 1.83e-12 | 68 |
future brain | 1.83e-12 | 68 |
central nervous system | 2.31e-12 | 81 |
brain grey matter | 3.76e-12 | 34 |
gray matter | 3.76e-12 | 34 |
telencephalon | 4.25e-12 | 34 |
nervous system | 1.84e-11 | 89 |
regional part of telencephalon | 2.44e-11 | 32 |
cerebral hemisphere | 3.20e-11 | 32 |
regional part of cerebral cortex | 3.76e-09 | 22 |
neocortex | 1.65e-08 | 20 |
neurectoderm | 3.35e-08 | 86 |
cerebral cortex | 8.35e-08 | 25 |
pallium | 8.35e-08 | 25 |
neural plate | 9.35e-08 | 82 |
presumptive neural plate | 9.35e-08 | 82 |
hematopoietic system | 1.52e-07 | 98 |
blood island | 1.52e-07 | 98 |