FFCP PHASE1:Hg19::chr16:56691838..56691862,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:56691838..56691862,+ to FFCP PHASE1:Hg19::chr16:56691838..56691862,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4494 | |EntrezGene=4494 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7398 | |HGNC=7398 | ||
|TSSclassifier=strong | |||
|UniProt=P04733,A8MWH4 | |UniProt=P04733,A8MWH4 | ||
|association_with_transcript=0bp_to_ENST00000334350,ENST00000394501,NM_005949,uc002ejt.2_5end | |||
|cluster_id=chr16:56691838..56691862,+ | |||
|coexpression_cluster_id=C3575 | |||
|description=CAGE_peak_3_at_MT1F_5end | |||
|id=chr16:56691838..56691862,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.27e-08!18;CL:0000789!2.27e-08!18;CL:0002420!2.27e-08!18;CL:0002419!2.27e-08!18;CL:0000790!2.27e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.56e-08;18!CL:0000789;1.56e-08;18!CL:0002419;1.56e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.23e-08,18;CL:0000789,1.23e-08,18;CL:0002420,1.23e-08,18;CL:0002419,1.23e-08,18;CL:0000790,1.23e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;1.56e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.94e-20!115;UBERON:0001049!9.62e-19!57;UBERON:0005068!9.62e-19!57;UBERON:0006241!9.62e-19!57;UBERON:0007135!9.62e-19!57;UBERON:0001017!2.91e-17!82;UBERON:0005743!2.11e-16!86;UBERON:0002616!2.95e-16!59;UBERON:0000955!9.80e-15!69;UBERON:0006238!9.80e-15!69;UBERON:0003080!8.36e-13!42;UBERON:0000073!8.96e-13!94;UBERON:0001016!8.96e-13!94;UBERON:0002780!1.67e-12!41;UBERON:0001890!1.67e-12!41;UBERON:0006240!1.67e-12!41;UBERON:0003075!2.02e-11!86;UBERON:0007284!2.02e-11!86;UBERON:0002346!3.08e-11!90;UBERON:0002020!3.91e-11!34;UBERON:0003528!3.91e-11!34;UBERON:0001893!5.57e-11!34;UBERON:0002791!1.06e-10!33;UBERON:0001869!2.92e-10!32;UBERON:0002619!2.11e-08!22;UBERON:0003056!3.51e-08!61;UBERON:0000956!6.60e-08!25;UBERON:0000203!6.60e-08!25;UBERON:0001950!1.65e-07!20;UBERON:0003076!2.33e-07!15;UBERON:0003057!2.33e-07!15;UBERON:0000153!9.31e-07!129;UBERON:0007811!9.31e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;4.33e-10;53!UBERON:0002616;4.33e-10;53!UBERON:0003528;6.44e-10;34!UBERON:0002020;6.44e-10;34!UBERON:0001893;9.32e-10;34!UBERON:0001869;1.28e-09;32!UBERON:0002780;1.51e-09;41!UBERON:0001890;1.51e-09;41!UBERON:0002791;1.55e-09;32!UBERON:0002619;1.05e-08;22!UBERON:0000956;4.59e-08;25!UBERON:0000203;4.59e-08;25!UBERON:0001950;8.67e-08;20!UBERON:0001017;9.06e-08;75!UBERON:0000955;5.39e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.04e-20,114;UBERON:0001049,4.35e-19,56;UBERON:0005068,4.35e-19,56;UBERON:0006241,4.35e-19,56;UBERON:0007135,4.35e-19,56;UBERON:0001017,4.79e-18,81;UBERON:0000073,2.02e-17,53;UBERON:0002616,2.02e-17,53;UBERON:0000955,2.01e-15,68;UBERON:0006238,2.01e-15,68;UBERON:0001016,3.53e-14,89;UBERON:0002780,6.27e-13,41;UBERON:0001890,6.27e-13,41;UBERON:0003080,6.27e-13,41;UBERON:0006240,6.27e-13,41;UBERON:0003528,1.66e-11,34;UBERON:0002020,1.66e-11,34;UBERON:0001893,2.39e-11,34;UBERON:0003075,3.94e-11,82;UBERON:0007284,3.94e-11,82;UBERON:0002346,4.67e-11,86;UBERON:0001869,1.34e-10,32;UBERON:0002791,1.48e-10,32;UBERON:0010371,3.79e-09,104;UBERON:0011216,5.86e-09,223;UBERON:0002619,1.14e-08,22;UBERON:0000956,3.73e-08,25;UBERON:0000203,3.73e-08,25;UBERON:0001950,9.63e-08,20;UBERON:0003056,1.03e-07,61;UBERON:0003076,1.38e-07,15;UBERON:0003057,1.38e-07,15 | |||
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| ||
|short_description=p3@MT1F | |||
}} | }} |
Latest revision as of 02:11, 17 September 2015
Short description: | p3@MT1F |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MT1F_5end |
Coexpression cluster: | C3575_liver_Hepatocyte_testicular_Placental_colon_hepatoblastoma_acute |
Association with transcript: | 0bp_to_ENST00000334350, ENST00000394501, NM_005949, uc002ejt.2_5end |
EntrezGene: | MT1F |
HGNC: | 7398 |
UniProt: | P04733A8MWH4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.23e-08 | 18 |
alpha-beta T cell | 1.23e-08 | 18 |
immature T cell | 1.23e-08 | 18 |
mature T cell | 1.23e-08 | 18 |
immature alpha-beta T cell | 1.23e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.04e-20 | 114 |
neural tube | 4.35e-19 | 56 |
neural rod | 4.35e-19 | 56 |
future spinal cord | 4.35e-19 | 56 |
neural keel | 4.35e-19 | 56 |
central nervous system | 4.79e-18 | 81 |
regional part of nervous system | 2.02e-17 | 53 |
regional part of brain | 2.02e-17 | 53 |
brain | 2.01e-15 | 68 |
future brain | 2.01e-15 | 68 |
nervous system | 3.53e-14 | 89 |
regional part of forebrain | 6.27e-13 | 41 |
forebrain | 6.27e-13 | 41 |
anterior neural tube | 6.27e-13 | 41 |
future forebrain | 6.27e-13 | 41 |
brain grey matter | 1.66e-11 | 34 |
gray matter | 1.66e-11 | 34 |
telencephalon | 2.39e-11 | 34 |
neural plate | 3.94e-11 | 82 |
presumptive neural plate | 3.94e-11 | 82 |
neurectoderm | 4.67e-11 | 86 |
cerebral hemisphere | 1.34e-10 | 32 |
regional part of telencephalon | 1.48e-10 | 32 |
ecto-epithelium | 3.79e-09 | 104 |
organ system subdivision | 5.86e-09 | 223 |
regional part of cerebral cortex | 1.14e-08 | 22 |
cerebral cortex | 3.73e-08 | 25 |
pallium | 3.73e-08 | 25 |
neocortex | 9.63e-08 | 20 |
pre-chordal neural plate | 1.03e-07 | 61 |
posterior neural tube | 1.38e-07 | 15 |
chordal neural plate | 1.38e-07 | 15 |