FFCP PHASE1:Hg19::chr2:98765991..98765997,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:98765991..98765997,+ to FFCP PHASE1:Hg19::chr2:98765991..98765997,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=200403 | |EntrezGene=200403 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=28385 | |HGNC=28385 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_uc010yvi.1_5end | |||
|cluster_id=chr2:98765991..98765997,+ | |||
|description=CAGE_peak_4_at_VWA3B_5end | |||
|id=chr2:98765991..98765997,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000222;1.81e-40;1 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.81e-40;1!UBERON:0003056;1.71e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.62e-27!57;UBERON:0005068!2.62e-27!57;UBERON:0006241!2.62e-27!57;UBERON:0007135!2.62e-27!57;UBERON:0001017!1.39e-23!82;UBERON:0005743!2.99e-23!86;UBERON:0000073!1.80e-21!94;UBERON:0001016!1.80e-21!94;UBERON:0003075!4.45e-21!86;UBERON:0007284!4.45e-21!86;UBERON:0002346!6.00e-21!90;UBERON:0007023!1.16e-20!115;UBERON:0002616!1.48e-20!59;UBERON:0002020!3.05e-20!34;UBERON:0003528!3.05e-20!34;UBERON:0001893!3.18e-20!34;UBERON:0000955!5.88e-20!69;UBERON:0006238!5.88e-20!69;UBERON:0002791!7.10e-19!33;UBERON:0002780!1.07e-17!41;UBERON:0001890!1.07e-17!41;UBERON:0006240!1.07e-17!41;UBERON:0001869!3.08e-17!32;UBERON:0003080!3.95e-17!42;UBERON:0000033!7.51e-14!123;UBERON:0000924!1.05e-13!173;UBERON:0006601!1.05e-13!173;UBERON:0000153!1.30e-13!129;UBERON:0007811!1.30e-13!129;UBERON:0004121!1.57e-13!169;UBERON:0003056!3.94e-12!61;UBERON:0003076!7.26e-12!15;UBERON:0003057!7.26e-12!15;UBERON:0000956!8.92e-12!25;UBERON:0000203!8.92e-12!25;UBERON:0002308!5.79e-11!9;UBERON:0000125!5.79e-11!9;UBERON:0002619!4.71e-10!22;UBERON:0001950!2.98e-09!20;UBERON:0004732!4.76e-09!13;UBERON:0002298!7.52e-09!8;UBERON:0000119!1.06e-08!312;UBERON:0002420!3.14e-08!9;UBERON:0007245!3.14e-08!9;UBERON:0010009!3.14e-08!9;UBERON:0010011!3.14e-08!9;UBERON:0000454!3.14e-08!9;UBERON:0000200!3.54e-08!6;UBERON:0000483!6.48e-08!309;UBERON:0009663!1.22e-07!7;UBERON:0004733!1.68e-07!12;UBERON:0002028!1.68e-07!12;UBERON:0007277!1.68e-07!12;UBERON:0004111!2.77e-07!241;UBERON:0006331!3.67e-07!3;UBERON:0000025!4.49e-07!194;UBERON:0002240!6.41e-07!3;UBERON:0002771!8.93e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.81e-40;1!UBERON:0001785;1.81e-40;1!UBERON:0002464;1.81e-40;1!UBERON:0004904;1.81e-40;1!UBERON:0001021;1.81e-40;1!UBERON:0001954;3.11e-21;2!UBERON:0003022;3.11e-21;2!UBERON:0002421;3.11e-21;2!UBERON:0002600;3.11e-21;2!UBERON:0003714;5.15e-21;2!UBERON:0005162;5.15e-21;2!UBERON:0000122;5.15e-21;2!UBERON:0001896;1.71e-14;3!UBERON:0005290;1.71e-14;3!UBERON:0004732;3.43e-13;13!UBERON:0000349;2.53e-09;5!UBERON:0002298;6.55e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.48e-40,1;UBERON:0001785,1.48e-40,1;UBERON:0002464,1.48e-40,1;UBERON:0004904,1.48e-40,1;UBERON:0001021,1.48e-40,1;UBERON:0003902,1.48e-40,1;UBERON:0005425,1.48e-40,1;UBERON:0001954,3.11e-21,2;UBERON:0003022,3.11e-21,2;UBERON:0002421,3.11e-21,2;UBERON:0002600,3.11e-21,2;UBERON:0003714,4.66e-21,2;UBERON:0005162,4.66e-21,2;UBERON:0000122,4.66e-21,2;UBERON:0001896,1.40e-14,3;UBERON:0005290,1.40e-14,3;UBERON:0010096,1.40e-14,3;UBERON:0004732,3.03e-13,13;UBERON:0001781,3.10e-11,4;UBERON:0000349,2.53e-09,5;UBERON:0002298,5.92e-08,6;UBERON:0000966,6.34e-08,6;UBERON:0005388,6.34e-08,6;UBERON:0001802,6.34e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.2933531432838,0,0,0,0,0,0.771622122786426,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0.214840489736547,0.290033387828457,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0.359744915166629,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0.844016498463076,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.482385754501632,0,0.884634079449797,0.295547618953547,0.219385397153973,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0,0.808813595768125,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0.189932387867636,0,0,0,0,0,0,0,0,0.124252535565433,0,0.135904206073614,0,0,0,0,0.684526894459965,0,0,0.262887354279314,0.279282401272254,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,2.58786471611994,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0.258565912723101,0.92562821219883,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.751145584238999,0,1.77486482458964,0.620964029413834,0,0,0.151649117541648,0,0,0,0,0,0.233713309847224,0,0,0,0,0.228840068396924,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,1.34064966502131,0,0,0,0.385375350578757,0,0.798169295285756,0,0,0.207471757392654,0.484426936895553,1.42769420259154,0.196295437002051,0,0.183428598521679,0,0,0,0,0.300841313397029,0,0,0,0,0,0.270150338473579,0,0.413373593002368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.197318320688547,0,0,0.078493092850514,0.471346769748006,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.891139200981258,0.4226557275834,0,0,0.0644578879735772,0,0,0,0,0,0,0.860037498908708,0,0.271965960763659,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0.930896962757057,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.2933531432838,0,0,0,0,0,0.771622122786426,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0.214840489736547,0.290033387828457,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0.359744915166629,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0,0,0,0.844016498463076,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.482385754501632,0,0.884634079449797,0.295547618953547,0.219385397153973,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0,0.808813595768125,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0.0969890164884194,0,0,0,0.19871461170299,0.189932387867636,0,0,0,0,0,0,0,0,0.124252535565433,0,0.135904206073614,0,0,0,0,0.684526894459965,0,0,0.262887354279314,0.279282401272254,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,2.58786471611994,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0.258565912723101,0.92562821219883,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.751145584238999,0,1.77486482458964,0.620964029413834,0,0,0.151649117541648,0,0,0,0,0,0.233713309847224,0,0,0,0,0.228840068396924,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,1.34064966502131,0,0,0,0.385375350578757,0,0.798169295285756,0,0,0.207471757392654,0.484426936895553,1.42769420259154,0.196295437002051,0,0.183428598521679,0,0,0,0,0.300841313397029,0,0,0,0,0,0.270150338473579,0,0.413373593002368,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.197318320688547,0,0,0.078493092850514,0.471346769748006,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.891139200981258,0.4226557275834,0,0,0.0644578879735772,0,0,0,0,0,0,0.860037498908708,0,0.271965960763659,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0.930896962757057,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p4@VWA3B | |||
}} | }} |
Latest revision as of 03:34, 19 September 2015
Short description: | p4@VWA3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_VWA3B_5end |
Coexpression cluster: | NA |
Association with transcript: | 33bp_to_uc010yvi.1_5end |
EntrezGene: | VWA3B |
HGNC: | 28385 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.48e-40 | 1 |
cranial nerve | 1.48e-40 | 1 |
nerve trunk | 1.48e-40 | 1 |
nerve connecting eye with brain | 1.48e-40 | 1 |
nerve | 1.48e-40 | 1 |
retinal neural layer | 1.48e-40 | 1 |
presumptive neural retina | 1.48e-40 | 1 |
Ammon's horn | 3.11e-21 | 2 |
lobe parts of cerebral cortex | 3.11e-21 | 2 |
hippocampal formation | 3.11e-21 | 2 |
limbic lobe | 3.11e-21 | 2 |
neural tissue | 4.66e-21 | 2 |
multi cell component structure | 4.66e-21 | 2 |
neuron projection bundle | 4.66e-21 | 2 |
medulla oblongata | 1.40e-14 | 3 |
myelencephalon | 1.40e-14 | 3 |
future myelencephalon | 1.40e-14 | 3 |
segmental subdivision of nervous system | 3.03e-13 | 13 |
layer of retina | 3.10e-11 | 4 |
limbic system | 2.53e-09 | 5 |
brainstem | 5.92e-08 | 6 |
retina | 6.34e-08 | 6 |
photoreceptor array | 6.34e-08 | 6 |
posterior segment of eyeball | 6.34e-08 | 6 |