FFCP PHASE1:Hg19::chr7:105029318..105029325,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:105029318..105029325,- to FFCP PHASE1:Hg19::chr7:105029318..105029325,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6733 | |EntrezGene=6733 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11306 | |HGNC=11306 | ||
|TSSclassifier=strong | |||
|UniProt=P78362,C9J2M4 | |UniProt=P78362,C9J2M4 | ||
|association_with_transcript=15bp_to_ENST00000393651,ENST00000460391,NM_182692,uc003vcv.2_5end | |||
|cluster_id=chr7:105029318..105029325,- | |||
|description=CAGE_peak_4_at_SRPK2_5end | |||
|id=chr7:105029318..105029325,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.66e-11!57;UBERON:0005068!1.66e-11!57;UBERON:0006241!1.66e-11!57;UBERON:0007135!1.66e-11!57;UBERON:0003080!2.33e-10!42;UBERON:0002780!7.82e-10!41;UBERON:0001890!7.82e-10!41;UBERON:0006240!7.82e-10!41;UBERON:0002020!1.73e-09!34;UBERON:0003528!1.73e-09!34;UBERON:0000956!4.50e-09!25;UBERON:0000203!4.50e-09!25;UBERON:0002619!4.51e-09!22;UBERON:0001017!1.60e-08!82;UBERON:0001869!1.86e-08!32;UBERON:0001893!1.95e-08!34;UBERON:0002791!3.03e-08!33;UBERON:0002616!4.02e-08!59;UBERON:0001950!4.13e-08!20;UBERON:0007023!1.10e-07!115;UBERON:0000955!2.55e-07!69;UBERON:0006238!2.55e-07!69;UBERON:0000073!2.55e-07!94;UBERON:0001016!2.55e-07!94;UBERON:0005743!4.03e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.83e-14;22!UBERON:0000956;8.53e-14;25!UBERON:0000203;8.53e-14;25!UBERON:0001950;1.37e-12;20!UBERON:0003528;1.34e-10;34!UBERON:0002020;1.34e-10;34!UBERON:0001869;6.66e-10;32!UBERON:0002791;1.20e-09;32!UBERON:0001893;8.15e-09;34!UBERON:0002780;4.96e-08;41!UBERON:0001890;4.96e-08;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,2.81e-15,22;UBERON:0000956,1.82e-14,25;UBERON:0000203,1.82e-14,25;UBERON:0003528,1.23e-13,34;UBERON:0002020,1.23e-13,34;UBERON:0001049,1.74e-13,56;UBERON:0005068,1.74e-13,56;UBERON:0006241,1.74e-13,56;UBERON:0007135,1.74e-13,56;UBERON:0001950,3.19e-13,20;UBERON:0002791,1.10e-11,32;UBERON:0001869,1.10e-11,32;UBERON:0000073,2.62e-11,53;UBERON:0002616,2.62e-11,53;UBERON:0002780,4.40e-11,41;UBERON:0001890,4.40e-11,41;UBERON:0003080,4.40e-11,41;UBERON:0006240,4.40e-11,41;UBERON:0001893,1.09e-10,34;UBERON:0001016,5.55e-10,89;UBERON:0001017,1.31e-09,81;UBERON:0003075,2.90e-08,82;UBERON:0007284,2.90e-08,82;UBERON:0002346,3.25e-08,86;UBERON:0007023,5.41e-08,114;UBERON:0003056,3.48e-07,61;UBERON:0001872,3.94e-07,5;UBERON:0000955,4.44e-07,68;UBERON:0006238,4.44e-07,68;UBERON:0002021,5.16e-07,5 | |||
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| ||
|short_description=p4@SRPK2 | |||
}} | }} |
Latest revision as of 21:31, 24 September 2015
Short description: | p4@SRPK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SRPK2_5end |
Coexpression cluster: | NA |
Association with transcript: | 15bp_to_ENST00000393651, ENST00000460391, NM_182692, uc003vcv.2_5end |
EntrezGene: | SRPK2 |
HGNC: | 11306 |
UniProt: | P78362C9J2M4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 2.81e-15 | 22 |
cerebral cortex | 1.82e-14 | 25 |
pallium | 1.82e-14 | 25 |
brain grey matter | 1.23e-13 | 34 |
gray matter | 1.23e-13 | 34 |
neural tube | 1.74e-13 | 56 |
neural rod | 1.74e-13 | 56 |
future spinal cord | 1.74e-13 | 56 |
neural keel | 1.74e-13 | 56 |
neocortex | 3.19e-13 | 20 |
regional part of telencephalon | 1.10e-11 | 32 |
cerebral hemisphere | 1.10e-11 | 32 |
regional part of nervous system | 2.62e-11 | 53 |
regional part of brain | 2.62e-11 | 53 |
regional part of forebrain | 4.40e-11 | 41 |
forebrain | 4.40e-11 | 41 |
anterior neural tube | 4.40e-11 | 41 |
future forebrain | 4.40e-11 | 41 |
telencephalon | 1.09e-10 | 34 |
nervous system | 5.55e-10 | 89 |
central nervous system | 1.31e-09 | 81 |
neural plate | 2.90e-08 | 82 |
presumptive neural plate | 2.90e-08 | 82 |
neurectoderm | 3.25e-08 | 86 |
adult organism | 5.41e-08 | 114 |
pre-chordal neural plate | 3.48e-07 | 61 |
parietal lobe | 3.94e-07 | 5 |
brain | 4.44e-07 | 68 |
future brain | 4.44e-07 | 68 |
occipital lobe | 5.16e-07 | 5 |