FFCP PHASE1:Hg19::chr9:2016724..2016752,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:2016724..2016752,+ to FFCP PHASE1:Hg19::chr9:2016724..2016752,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6595 | |EntrezGene=6595 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11098 | |HGNC=11098 | ||
|TSSclassifier=strong | |||
|UniProt=F6RS74 | |UniProt=F6RS74 | ||
|association_with_transcript=-334bp_to_ENST00000457226_5end | |||
|cluster_id=chr9:2016724..2016752,+ | |||
|description=CAGE_peak_7_at_SMARCA2_5end | |||
|id=chr9:2016724..2016752,+ | |||
|ontology_enrichment_celltype=CL:0000838!5.44e-11!52;CL:0000542!2.08e-10!53;CL:0000051!2.08e-10!53;CL:0000988!2.05e-09!182;CL:0000037!3.16e-09!172;CL:0000566!3.16e-09!172;CL:0002032!1.91e-08!165;CL:0000837!1.91e-08!165;CL:0000791!2.51e-08!18;CL:0000789!2.51e-08!18;CL:0002420!2.51e-08!18;CL:0002419!2.51e-08!18;CL:0000790!2.51e-08!18;CL:0000084!4.87e-07!25;CL:0000827!4.87e-07!25;CL:0000738!4.97e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.18e-09;18!CL:0000789;2.18e-09;18!CL:0002419;2.18e-09;18!CL:0000084;6.84e-08;25!CL:0000625;2.31e-07;11!CL:0000542;9.34e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.48e-11,52;CL:0000542,1.14e-10,53;CL:0000051,1.14e-10,53;CL:0000988,3.39e-10,177;CL:0000037,1.04e-09,168;CL:0000791,1.48e-09,18;CL:0000789,1.48e-09,18;CL:0002420,1.48e-09,18;CL:0002419,1.48e-09,18;CL:0000790,1.48e-09,18;CL:0002032,5.99e-09,161;CL:0000837,5.99e-09,161;CL:0000084,4.06e-08,25;CL:0000827,4.06e-08,25;CL:0000738,1.77e-07,136;CL:0000625,2.15e-07,11;CL:0002087,4.72e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;2.18e-09;18!CL:0000051;9.34e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.56e-33!115;UBERON:0001049!2.22e-22!57;UBERON:0005068!2.22e-22!57;UBERON:0006241!2.22e-22!57;UBERON:0007135!2.22e-22!57;UBERON:0002616!2.44e-19!59;UBERON:0003080!1.61e-17!42;UBERON:0002780!4.68e-17!41;UBERON:0001890!4.68e-17!41;UBERON:0006240!4.68e-17!41;UBERON:0000955!5.15e-15!69;UBERON:0006238!5.15e-15!69;UBERON:0002020!7.75e-14!34;UBERON:0003528!7.75e-14!34;UBERON:0001893!2.75e-13!34;UBERON:0002791!4.87e-13!33;UBERON:0001869!1.85e-12!32;UBERON:0001017!2.69e-12!82;UBERON:0005743!5.09e-11!86;UBERON:0003075!1.01e-10!86;UBERON:0007284!1.01e-10!86;UBERON:0002619!1.24e-10!22;UBERON:0002346!2.41e-10!90;UBERON:0000956!3.22e-10!25;UBERON:0000203!3.22e-10!25;UBERON:0001950!8.43e-10!20;UBERON:0000073!1.88e-09!94;UBERON:0001016!1.88e-09!94;UBERON:0000178!7.28e-09!15;UBERON:0000179!7.28e-09!15;UBERON:0000463!7.28e-09!15;UBERON:0003056!2.16e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.30e-13;41!UBERON:0001890;1.30e-13;41!UBERON:0000073;2.82e-13;53!UBERON:0002616;2.82e-13;53!UBERON:0003528;1.18e-12;34!UBERON:0002020;1.18e-12;34!UBERON:0002791;2.61e-12;32!UBERON:0001893;3.26e-12;34!UBERON:0001869;3.79e-12;32!UBERON:0002619;4.50e-12;22!UBERON:0001950;4.52e-11;20!UBERON:0000956;4.94e-11;25!UBERON:0000203;4.94e-11;25!UBERON:0000178;1.56e-10;15!UBERON:0000179;1.56e-10;15!UBERON:0000463;1.56e-10;15!UBERON:0007023;2.41e-10;114!UBERON:0002390;1.49e-07;32!UBERON:0001017;2.60e-07;75!UBERON:0000955;5.05e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.72e-36,114;UBERON:0001049,1.92e-24,56;UBERON:0005068,1.92e-24,56;UBERON:0006241,1.92e-24,56;UBERON:0007135,1.92e-24,56;UBERON:0000073,1.79e-22,53;UBERON:0002616,1.79e-22,53;UBERON:0002780,2.49e-19,41;UBERON:0001890,2.49e-19,41;UBERON:0003080,2.49e-19,41;UBERON:0006240,2.49e-19,41;UBERON:0003528,1.54e-15,34;UBERON:0002020,1.54e-15,34;UBERON:0000955,3.60e-15,68;UBERON:0006238,3.60e-15,68;UBERON:0001893,6.67e-15,34;UBERON:0002791,3.03e-14,32;UBERON:0003075,3.63e-14,82;UBERON:0007284,3.63e-14,82;UBERON:0001869,6.29e-14,32;UBERON:0001017,5.41e-13,81;UBERON:0002346,5.66e-13,86;UBERON:0002619,2.79e-12,22;UBERON:0001016,1.98e-11,89;UBERON:0001950,2.68e-11,20;UBERON:0000956,2.80e-11,25;UBERON:0000203,2.80e-11,25;UBERON:0003056,2.64e-10,61;UBERON:0000178,3.42e-10,15;UBERON:0000179,3.42e-10,15;UBERON:0000463,3.42e-10,15;UBERON:0010371,1.51e-08,104 | |||
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| ||
|short_description=p7@SMARCA2 | |||
}} | }} |
Latest revision as of 21:37, 16 September 2015
Short description: | p7@SMARCA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SMARCA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -334bp_to_ENST00000457226_5end |
EntrezGene: | SMARCA2 |
HGNC: | 11098 |
UniProt: | F6RS74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.48e-11 | 52 |
lymphocyte | 1.14e-10 | 53 |
common lymphoid progenitor | 1.14e-10 | 53 |
hematopoietic cell | 3.39e-10 | 177 |
hematopoietic stem cell | 1.04e-09 | 168 |
mature alpha-beta T cell | 1.48e-09 | 18 |
alpha-beta T cell | 1.48e-09 | 18 |
immature T cell | 1.48e-09 | 18 |
mature T cell | 1.48e-09 | 18 |
immature alpha-beta T cell | 1.48e-09 | 18 |
hematopoietic oligopotent progenitor cell | 5.99e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.99e-09 | 161 |
T cell | 4.06e-08 | 25 |
pro-T cell | 4.06e-08 | 25 |
leukocyte | 1.77e-07 | 136 |
CD8-positive, alpha-beta T cell | 2.15e-07 | 11 |
nongranular leukocyte | 4.72e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.72e-36 | 114 |
neural tube | 1.92e-24 | 56 |
neural rod | 1.92e-24 | 56 |
future spinal cord | 1.92e-24 | 56 |
neural keel | 1.92e-24 | 56 |
regional part of nervous system | 1.79e-22 | 53 |
regional part of brain | 1.79e-22 | 53 |
regional part of forebrain | 2.49e-19 | 41 |
forebrain | 2.49e-19 | 41 |
anterior neural tube | 2.49e-19 | 41 |
future forebrain | 2.49e-19 | 41 |
brain grey matter | 1.54e-15 | 34 |
gray matter | 1.54e-15 | 34 |
brain | 3.60e-15 | 68 |
future brain | 3.60e-15 | 68 |
telencephalon | 6.67e-15 | 34 |
regional part of telencephalon | 3.03e-14 | 32 |
neural plate | 3.63e-14 | 82 |
presumptive neural plate | 3.63e-14 | 82 |
cerebral hemisphere | 6.29e-14 | 32 |
central nervous system | 5.41e-13 | 81 |
neurectoderm | 5.66e-13 | 86 |
regional part of cerebral cortex | 2.79e-12 | 22 |
nervous system | 1.98e-11 | 89 |
neocortex | 2.68e-11 | 20 |
cerebral cortex | 2.80e-11 | 25 |
pallium | 2.80e-11 | 25 |
pre-chordal neural plate | 2.64e-10 | 61 |
blood | 3.42e-10 | 15 |
haemolymphatic fluid | 3.42e-10 | 15 |
organism substance | 3.42e-10 | 15 |
ecto-epithelium | 1.51e-08 | 104 |