FFCP PHASE1:Mm9::chr1:173959095..173959106,-: Difference between revisions
From FANTOM5_SSTAR
m moved FFCP PHASE1 mm9::chr1:173959095..173959106,- to FFCP PHASE1:Mm9::chr1:173959095..173959106,-: NSchange |
No edit summary |
||
| (6 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=76 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:173959095..173959106,- | |||
|description=CAGE_peak_at_chr1:173959095..173959106,- | |||
|id=chr1:173959095..173959106,- | |||
|ontology_enrichment_celltype=CL:0002609!4.40e-26!6;CL:0002608!1.12e-13!3;CL:0000117!2.12e-08!23;CL:0000337!2.12e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002609,2.48e-72,6;CL:0002608,8.72e-24,3;CL:0000117,1.61e-19,23;CL:0000337,1.61e-19,23;CL:0000540,8.03e-14,33;CL:0000047,8.03e-14,33;CL:0000031,8.03e-14,33;CL:0000404,8.03e-14,33;CL:0000393,8.52e-12,39;CL:0000211,8.52e-12,39;CL:0002319,9.33e-11,43;CL:0000221,1.59e-10,44;CL:0000133,1.59e-10,44;CL:0002321,8.13e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002791!1.60e-10!29;UBERON:0003528!1.60e-10!29;UBERON:0001893!1.60e-10!29;UBERON:0001954!7.04e-10!7;UBERON:0003022!7.04e-10!7;UBERON:0002421!7.04e-10!7;UBERON:0000349!7.04e-10!7;UBERON:0002600!7.04e-10!7;UBERON:0000956!2.54e-09!21;UBERON:0001869!2.54e-09!21;UBERON:0000203!2.54e-09!21;UBERON:0002020!9.03e-09!34;UBERON:0002780!1.81e-07!39;UBERON:0001890!1.81e-07!39;UBERON:0006240!1.81e-07!39;UBERON:0003080!3.02e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.63e-21,21;UBERON:0001869,2.63e-21,21;UBERON:0000203,2.63e-21,21;UBERON:0003528,1.24e-15,29;UBERON:0002791,1.24e-15,29;UBERON:0001893,1.24e-15,29;UBERON:0002020,1.96e-13,34;UBERON:0002780,8.52e-12,39;UBERON:0001890,8.52e-12,39;UBERON:0006240,8.52e-12,39;UBERON:0003080,1.62e-11,40;UBERON:0001954,7.87e-11,7;UBERON:0003022,7.87e-11,7;UBERON:0002421,7.87e-11,7;UBERON:0000349,7.87e-11,7;UBERON:0002600,7.87e-11,7;UBERON:0002616,4.29e-10,46;UBERON:0000955,6.83e-10,47;UBERON:0006238,6.83e-10,47;UBERON:0003056,1.64e-09,49;UBERON:0001049,5.37e-09,52;UBERON:0005068,5.37e-09,52;UBERON:0006241,5.37e-09,52;UBERON:0007135,5.37e-09,52;UBERON:0000073,1.10e-08,54;UBERON:0002346,2.08e-07,64;UBERON:0003075,2.08e-07,64;UBERON:0007284,2.08e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.45865332926454,4.99521971827255,4.20649922702764,0,0,1.10241719293459,0.766763768145891,1.83843757322004,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0,0.486213434136588,0,0,0,0,0,0.252697211763798,0,0,0.0936415074698824,0.0640251524048693,0.17230640686684,0,0.231768651889711,0,0,0,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.45865332926454,4.99521971827255,4.20649922702764,0,0,1.10241719293459,0.766763768145891,1.83843757322004,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0.399024873401031,0,0.486213434136588,0,0,0,0,0,0.252697211763798,0,0,0.0936415074698824,0.0640251524048693,0.17230640686684,0,0.231768651889711,0,0,0,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0.192906610981141,0,0,0,0,0,0 | ||
|short_description=p@chr1:173959095..173959106,- | |||
}} | }} | ||
Latest revision as of 07:03, 5 August 2015
| Short description: | p@chr1:173959095..173959106, - |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr1:173959095..173959106, - |
| Coexpression cluster: | MCL_coexpression_mm9:76 |
| Association with transcript: | NA |
| EntrezGene: | NA |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron of cerebral cortex | 2.48e-72 | 6 |
| hippocampal neuron | 8.72e-24 | 3 |
| CNS neuron (sensu Vertebrata) | 1.61e-19 | 23 |
| neuroblast (sensu Vertebrata) | 1.61e-19 | 23 |
| neuron | 8.03e-14 | 33 |
| neuronal stem cell | 8.03e-14 | 33 |
| neuroblast | 8.03e-14 | 33 |
| electrically signaling cell | 8.03e-14 | 33 |
| electrically responsive cell | 8.52e-12 | 39 |
| electrically active cell | 8.52e-12 | 39 |
| neural cell | 9.33e-11 | 43 |
| ectodermal cell | 1.59e-10 | 44 |
| neurectodermal cell | 1.59e-10 | 44 |
| embryonic cell | 8.13e-07 | 70 |
| Ontology term | p-value | n |
|---|---|---|
| cerebral cortex | 2.63e-21 | 21 |
| cerebral hemisphere | 2.63e-21 | 21 |
| pallium | 2.63e-21 | 21 |
| brain grey matter | 1.24e-15 | 29 |
| regional part of telencephalon | 1.24e-15 | 29 |
| telencephalon | 1.24e-15 | 29 |
| gray matter | 1.96e-13 | 34 |
| regional part of forebrain | 8.52e-12 | 39 |
| forebrain | 8.52e-12 | 39 |
| future forebrain | 8.52e-12 | 39 |
| anterior neural tube | 1.62e-11 | 40 |
| Ammon's horn | 7.87e-11 | 7 |
| lobe parts of cerebral cortex | 7.87e-11 | 7 |
| hippocampal formation | 7.87e-11 | 7 |
| limbic system | 7.87e-11 | 7 |
| limbic lobe | 7.87e-11 | 7 |
| regional part of brain | 4.29e-10 | 46 |
| brain | 6.83e-10 | 47 |
| future brain | 6.83e-10 | 47 |
| pre-chordal neural plate | 1.64e-09 | 49 |
| neural tube | 5.37e-09 | 52 |
| neural rod | 5.37e-09 | 52 |
| future spinal cord | 5.37e-09 | 52 |
| neural keel | 5.37e-09 | 52 |
| regional part of nervous system | 1.10e-08 | 54 |
| neurectoderm | 2.08e-07 | 64 |
| neural plate | 2.08e-07 | 64 |
| presumptive neural plate | 2.08e-07 | 64 |