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{{f5samples
{{f5samples
|id=FF:10428-106D5
|DRA_sample_Accession=CAGE@SAMD00005691
|name=anaplastic carcinoma cell line:8305C
|accession_numbers=CAGE;DRX007826;DRR008698;DRZ000123;DRZ001508;DRZ011473;DRZ012858
|sample_id=10428
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949
|rna_tube_id=106D5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|rna_position=D5
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0103209,FF:0101610,FF:0100919
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1909
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.37!233.19!PAX8;;chr15:83953397..83953425,-!p1@BNC1!1.75!63.22!BNC1;;chr14:61116183..61116208,-!p1@SIX1!1.66!163.62!SIX1;;chr10:28034739..28034756,-!p1@MKX!1.56!35.40!MKX;;chr18:19749541..19749557,+!p1@GATA6!1.34!64.11!GATA6;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.37!PAX6;;chr6:10412392..10412409,-!p4@TFAP2A!1.28!20.81!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!1.26!19.15!RORB;;chr20:42543441..42543497,+!p1@TOX2!1.24!72.46!TOX2;;chr2:185463247..185463263,+!p1@ZNF804A!1.16!23.93!ZNF804A;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1339.71!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!1.11!28.72!TOX2;;chr6:34204921..34204939,+!p3@HMGA1!1.08!332.15!HMGA1;;chr2:172967621..172967637,-!p1@DLX2!1.06!28.72!DLX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.05!37.51!BHLHE41;;chr6:45390002..45390023,+!p6@RUNX2!1.03!16.92!RUNX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.00!15.03!TFAP2A;;chr20:6748325..6748352,+!p1@BMP2!1.00!13.25!BMP2;;chr3:157823517..157823562,-!p1@SHOX2!1.00!9.80!SHOX2;;chr12:26277817..26277863,-!p2@BHLHE41!0.99!11.91!BHLHE41;;chr3:141087339..141087387,+!p2@ZBTB38!0.97!87.93!ZBTB38;;chr6:1610293..1610310,+!p1@FOXC1!0.97!14.14!FOXC1;;chr6:28321971..28321995,-!p1@ZNF323!0.97!8.35!ZNF323;;chr9:14314131..14314147,-!p2@NFIB!0.96!46.64!NFIB;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.80!GATA3;;chr6:45390025..45390076,+!p2@RUNX2!0.95!19.59!RUNX2;;chr20:50179368..50179392,-!p2@NFATC2!0.95!10.46!NFATC2;;chr14:61116168..61116180,-!p2@SIX1!0.95!9.02!SIX1;;chr11:34642612..34642646,+!p1@EHF!0.95!8.01!EHF;;chr20:50721803..50721857,-!p2@ZFP64!0.94!12.36!ZFP64;;chr8:55370487..55370503,+!p1@SOX17!0.94!7.79!SOX17;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!30.61!ZBTB38;;chr9:14314566..14314618,-!p1@NFIB!0.91!90.27!NFIB;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.06!HMGA2;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.24!RUNX2;;chr6:28321909..28321965,-!p3@ZNF323!0.91!7.12!ZNF323;;chr9:100615499..100615519,+!p1@FOXE1!0.91!7.12!FOXE1;;chr9:77112225..77112238,+!p2@RORB!0.89!6.79!RORB;;chr15:83953373..83953386,-!p2@BNC1!0.89!6.68!BNC1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.88!86.26!ZC3H12A;;chr19:45252008..45252024,+!p2@BCL3!0.88!22.48!BCL3;;chr6:45389835..45389861,+!p7@RUNX2!0.88!10.91!RUNX2;;chr20:39317868..39317884,-!p1@MAFB!0.87!80.14!MAFB;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.49!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.86!9.68!ETV4;;chr2:200323414..200323455,-!p1@SATB2!0.85!13.69!SATB2;;chr2:101436564..101436647,+!p1@NPAS2!0.84!129.01!NPAS2;;chr20:2673383..2673441,+!p1@EBF4!0.84!9.68!EBF4;;chr22:38598086..38598105,+!p1@MAFF!0.83!65.23!MAFF;;chr6:1312325..1312340,+!p1@FOXQ1!0.83!9.68!FOXQ1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.01!GATA6;;chr11:65667846..65667868,-!p1@FOSL1!0.80!151.49!FOSL1;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.61!NFE2L2;;chr9:14082760..14082775,-!p6@NFIB!0.80!9.02!NFIB;;chr9:4299959..4299974,-!p4@GLIS3!0.80!8.68!GLIS3;;chr2:200322654..200322707,-!p2@SATB2!0.80!8.01!SATB2;;chr9:73029219..73029289,-!p2@KLF9!0.79!16.70!KLF9;;chr6:45390269..45390298,+!p5@RUNX2!0.79!8.90!RUNX2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!50.76!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.59!TWIST2;;chr22:39916558..39916579,+!p1@ATF4!0.77!1554.87!ATF4;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.40!FOSB;;chr9:14083467..14083483,-!p4@NFIB!0.77!13.02!NFIB;;chr9:14313893..14313908,-!p7@NFIB!0.76!7.01!NFIB;;chr10:8096772..8096787,+!p2@GATA3!0.76!5.79!GATA3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.75!269.14!NFKBIZ;;chr12:26277929..26277955,-!p3@BHLHE41!0.75!6.79!BHLHE41;;chr1:201979703..201979721,+!p2@ELF3!0.75!4.67!ELF3;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.58!POU2F2;;chr2:192015701..192015743,-!p1@STAT4!0.74!6.34!STAT4;;chr20:48807351..48807384,+!p1@CEBPB!0.73!507.12!CEBPB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.63!PPP1R13L;;chr7:28448965..28448994,+!p2@CREB5!0.73!16.81!CREB5;;chr6:45389791..45389832,+!p3@RUNX2!0.73!12.13!RUNX2;;chr1:59249645..59249656,-!p4@JUN!0.73!11.91!JUN;;chr5:150284532..150284549,-!p1@ZNF300!0.73!9.68!ZNF300;;chr13:72441315..72441454,-!p1@DACH1!0.73!9.46!DACH1;;chr8:80679993..80680011,-!p1@HEY1!0.73!6.57!HEY1;;chr12:66218003..66218018,+!p9@HMGA2!0.73!5.45!HMGA2;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.34!ETV4;;chr9:102584128..102584144,+!p3@NR4A3!0.72!8.57!NR4A3;;chr9:102584159..102584174,+!p2@NR4A3!0.72!8.24!NR4A3;;chr10:28035133..28035148,-!p3@MKX!0.72!4.23!MKX;;chr2:46524537..46524553,+!p1@EPAS1!0.71!466.38!EPAS1;;chr17:46126136..46126152,+!p1@NFE2L1!0.71!241.21!NFE2L1;;chr20:306489..306564,+!p1@SOX12!0.71!50.53!SOX12;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.38!NR4A2;;chr3:114343768..114343822,-!p1@ZBTB20!0.71!20.26!ZBTB20;;chr14:73360799..73360817,-!p1@DPF3!0.71!15.92!DPF3;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.47!TWIST1;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.23!TBX18;;chr5:137801160..137801176,+!p1@EGR1!0.70!458.81!EGR1;;chr18:3450161..3450183,+!p1@TGIF1!0.70!155.61!TGIF1;;chr8:57123815..57123867,-!p1@PLAG1!0.70!18.37!PLAG1;;chr5:134369905..134369972,-!p1@PITX1!0.70!6.57!PITX1;;chr4:149363475..149363492,-!p2@NR3C2!0.70!4.01!NR3C2;;chr14:62162285..62162296,+!p3@HIF1A!0.69!22.82!HIF1A;;chr12:96588368..96588394,+!p3@ELK3!0.69!11.69!ELK3;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.57!GATA6;;chr9:73029018..73029042,-!p6@KLF9!0.69!5.34!KLF9;;chr6:45390077..45390105,+!p9@RUNX2!0.69!5.12!RUNX2;;chr15:67357924..67357952,+!p2@SMAD3!0.68!28.38!SMAD3;;chr3:24536253..24536328,-!p1@THRB!0.68!7.68!THRB;;chr9:16870710..16870763,-!p1@BNC2!0.68!7.12!BNC2;;chr17:41623259..41623278,-!p7@ETV4!0.68!4.56!ETV4;;chr4:149363494..149363543,-!p1@NR3C2!0.68!3.78!NR3C2;;chr11:128563948..128564003,+!p1@FLI1!0.67!51.20!FLI1;;chr14:62162258..62162269,+!p2@HIF1A!0.67!40.74!HIF1A;;chr5:137804484..137804498,+!p2@EGR1!0.67!16.70!EGR1;;chr12:66218255..66218304,+!p3@HMGA2!0.67!11.13!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.90!ETV4;;chr14:24630902..24630948,+!p2@IRF9!0.67!4.67!IRF9;;chr2:191878812..191878823,-!p2@STAT1!0.66!4.67!STAT1;;chr12:26278008..26278024,-!p4@BHLHE41!0.66!4.34!BHLHE41;;chr6:21593973..21593988,+!p1@SOX4!0.65!145.37!SOX4;;chr9:110252035..110252057,-!p1@KLF4!0.65!65.12!KLF4;;chr14:61191018..61191048,-!p1@SIX4!0.65!8.35!SIX4;;chr2:28618532..28618610,+!p4@FOSL2!0.65!6.46!FOSL2;;chr17:46675420..46675465,-!p3@HOXB6!0.65!4.12!HOXB6;;chr2:113982635..113982648,-!p8@PAX8!0.65!3.45!PAX8;;chr2:96012397..96012417,+!p3@KCNIP3!0.65!3.45!KCNIP3;;chr2:191878874..191878938,-!p1@STAT1!0.64!217.72!STAT1;;chr17:70117153..70117174,+!p1@SOX9!0.64!40.41!SOX9;;chr19:53636125..53636178,-!p1@ZNF415!0.64!10.80!ZNF415;;chr9:14314106..14314119,-!p5@NFIB!0.64!6.68!NFIB;;chr14:37131058..37131139,+!p1@PAX9!0.64!3.34!PAX9;;chr5:158526917..158526932,-!p1@EBF1!0.63!9.24!EBF1;;chr6:45390442..45390479,+!p8@RUNX2!0.63!5.34!RUNX2;;chr3:169381420..169381535,-!p1@MECOM!0.63!3.90!MECOM;;chr2:102091566..102091581,-!p1@RFX8!0.63!3.23!RFX8;;chr2:46612891..46612907,+!p10@EPAS1!0.63!3.23!EPAS1;;chr3:141087562..141087594,+!p12@ZBTB38!0.63!3.23!ZBTB38;;chr22:38597987..38598021,+!p2@MAFF!0.62!22.82!MAFF;;chr15:60884706..60884743,-!p1@RORA!0.62!19.26!RORA;;chr20:39946361..39946379,-!p2@ZHX3!0.62!10.80!ZHX3;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.80!ARNTL2;;chr7:44143978..44143989,+!p2@AEBP1!0.62!6.46!AEBP1;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.90!TWIST2;;chr19:33865009..33865090,+!p3@CEBPG!0.62!4.45!CEBPG;;chr8:72756637..72756664,-!p3@MSC!0.62!3.67!MSC;;chr13:45010939..45011033,-!p1@TSC22D1!0.61!243.54!TSC22D1;;chr12:11802600..11802685,+!p1@ETV6!0.61!55.99!ETV6;;chr19:52839515..52839572,+!p1@ZNF610!0.61!7.35!ZNF610;;chr11:615570..615721,-!p2@IRF7!0.61!6.68!IRF7;;chr6:1612248..1612281,+!p2@FOXC1!0.61!3.45!FOXC1;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.12!FOXC1;;chr11:31832687..31832704,-!p6@PAX6!0.61!3.12!PAX6;;chr3:114866084..114866118,-!p2@ZBTB20!0.60!12.58!ZBTB20;;chr9:14314522..14314556,-!p3@NFIB!0.60!8.01!NFIB;;chr10:28034772..28034783,-!p4@MKX!0.60!3.01!MKX;;chr22:41697520..41697613,+!p1@ZC3H7B!0.59!199.69!ZC3H7B;;chr19:19932513..19932569,-!p1@ZNF506!0.59!66.56!ZNF506;;chr20:48599506..48599526,+!p1@SNAI1!0.59!22.26!SNAI1;;chr8:22550982..22550999,-!p1@EGR3!0.59!9.57!EGR3;;chr10:64576105..64576133,-!p1@EGR2!0.59!6.68!EGR2;;chr20:48807615..48807644,+!p6@CEBPB!0.59!5.23!CEBPB;;chr3:168864315..168864339,-!p2@MECOM!0.59!5.23!MECOM;;chr6:10415276..10415341,-!p2@TFAP2A!0.59!3.67!TFAP2A;;chr9:4299874..4299887,-!p9@GLIS3!0.59!2.89!GLIS3;;chr2:96012277..96012290,+!p5@KCNIP3!0.59!2.89!KCNIP3;;chr12:53614115..53614154,-!p1@RARG!0.58!18.25!RARG;;chr20:48807779..48807802,+!p10@CEBPB!0.58!5.01!CEBPB;;chr11:31832610..31832639,-!p5@PAX6!0.58!2.78!PAX6;;chr12:85673977..85674015,+!p1@ALX1!0.58!2.78!ALX1;;chr20:306177..306211,+!p2@SOX12!0.57!22.48!SOX12;;chr6:19837592..19837621,+!p1@ID4!0.57!20.48!ID4;;chr9:117150254..117150271,-!p1@AKNA!0.57!8.79!AKNA;;chr19:12203100..12203132,+!p1@ZNF788!0.57!6.23!ZNF788;;chr16:54320158..54320200,-!p5@IRX3!0.57!4.23!IRX3;;chr15:67418119..67418162,+!p5@SMAD3!0.57!3.12!SMAD3;;chr7:44143925..44143970,+!p1@AEBP1!0.56!74.24!AEBP1;;chr1:158979872..158979898,+!p3@IFI16!0.56!9.68!IFI16;;chr15:96874244..96874259,+!p5@NR2F2!0.56!7.35!NR2F2;;chr19:12163769..12163798,-!p1@ZNF878!0.56!3.67!ZNF878;;chr3:141087144..141087170,+!p11@ZBTB38!0.56!3.56!ZBTB38;;chr18:19749504..19749515,+!p5@GATA6!0.56!2.67!GATA6;;chr14:24630465..24630531,+!p1@IRF9!0.55!123.66!IRF9;;chr12:57914286..57914304,-!p1@DDIT3!0.55!116.21!DDIT3;;chr15:96874012..96874042,+!p2@NR2F2!0.55!28.72!NR2F2;;chr17:38256822..38256851,-!p1@NR1D1!0.55!25.16!NR1D1;;chr9:102584262..102584276,+!p1@NR4A3!0.55!6.68!NR4A3;;chr8:73921136..73921151,+!p2@TERF1!0.55!4.23!TERF1;;chr1:214161272..214161322,+!p1@PROX1!0.55!3.90!PROX1;;chr20:50179584..50179611,-!p6@NFATC2!0.55!2.56!NFATC2;;chr6:28321827..28321856,-!p5@ZNF323!0.55!2.56!ZNF323;;chr6:28322004..28322023,-!p6@ZNF323!0.55!2.56!ZNF323;;chr10:64018918..64018936,+!p2@ZNF365!0.55!2.56!ZNF365;;chr12:56753869..56753930,-!p1@STAT2!0.54!140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MAF1!0.22!1.34!MAF1;;chr14:89878529..89878559,-!p5@FOXN3!0.22!1.22!FOXN3;;chrX:129402754..129402766,-!p3@ZNF280C!0.22!1.22!ZNF280C;;chr4:146403912..146403972,+!p5@SMAD1!0.22!1.11!SMAD1;;chr5:150284461..150284481,-!p4@ZNF300!0.22!1.00!ZNF300;;chr22:41735880..41735903,+!p5@ZC3H7B!0.22!0.89!ZC3H7B;;chr4:149363544..149363583,-!p3@NR3C2!0.22!0.89!NR3C2;;chr12:66218152..66218174,+!p10@HMGA2!0.22!0.78!HMGA2;;chr11:31832549..31832562,-!p10@PAX6!0.22!0.67!PAX6;;chr11:31832862..31832884,-!p2@PAX6!0.22!0.67!PAX6;;chr12:66218923..66218934,+!p14@HMGA2!0.22!0.67!HMGA2;;chr13:72440901..72440968,-!p4@DACH1!0.22!0.67!DACH1;;chr5:134369222..134369237,-!p8@PITX1!0.22!0.67!PITX1;;chr5:158527139..158527161,-!p5@EBF1!0.22!0.67!EBF1;;chr6:1312155..1312187,+!p2@FOXQ1!0.22!0.67!FOXQ1;;chr8:30890810..30890880,-!p1@PURG!0.22!0.67!PURG;;chr8:57123898..57123909,-!p3@PLAG1!0.22!0.67!PLAG1;;chr19:42636625..42636632,-!p2@POU2F2!0.22!0.67!POU2F2;;chr20:49547417..49547424,-!p8@ADNP!0.22!0.67!ADNP;;chr21:36260495..36260506,-!p23@RUNX1!0.22!0.67!RUNX1;;chr9:22446814..22446830,+!p4@DMRTA1!0.22!0.67!DMRTA1;;chr9:14314066..14314075,-!p11@NFIB!0.22!0.67!NFIB;;chr22:39916888..39916894,+!p12@ATF4!0.22!0.67!ATF4;;chr2:113978342..113978354,-!p18@PAX8!0.22!0.67!PAX8;;chr2:172967242..172967265,-!p2@DLX2!0.22!0.67!DLX2;;chr2:172967323..172967336,-!p4@DLX2!0.22!0.67!DLX2;;chr2:172967353..172967365,-!p5@DLX2!0.22!0.67!DLX2;;chr2:200323212..200323223,-!p8@SATB2!0.22!0.67!SATB2;;chr2:85981027..85981047,+!p8@ATOH8!0.22!0.67!ATOH8;;chr2:95963052..95963106,+!p1@KCNIP3!0.22!0.67!KCNIP3;;chr3:24536332..24536358,-!p2@THRB!0.22!0.67!THRB;;chr14:75746340..75746368,+!p3@FOS!0.22!0.67!FOS;;chr14:99738138..99738163,-!p1@BCL11B!0.22!0.67!BCL11B;;chr15:83953782..83953786,-!p5@BNC1!0.22!0.67!BNC1;;chr15:96869165..96869183,+!p20@NR2F2!0.22!0.67!NR2F2;;chr17:7387459..7387470,-!p10@ZBTB4!0.22!0.67!ZBTB4;;chr18:32924372..32924430,-!p1@ZNF24!0.21!44.52!ZNF24;;chr2:27357479..27357524,-!p1@PREB!0.21!41.74!PREB;;chr14:89029366..89029425,+!p1@ZC3H14!0.21!33.50!ZC3H14;;chr20:39946279..39946356,-!p1@ZHX3!0.21!21.93!ZHX3;;chr9:2015335..2015370,+!p1@SMARCA2!0.21!17.25!SMARCA2;;chr20:61493117..61493187,-!p1@TCFL5!0.21!16.03!TCFL5;;chr19:52772832..52772861,+!p1@ZNF766!0.21!14.14!ZNF766;;chr19:52643169..52643199,-!p1@ZNF616!0.21!7.90!ZNF616;;chr6:34205372..34205412,+!p5@HMGA1!0.21!6.79!HMGA1;;chr19:44507091..44507163,+!p1@ZNF230!0.21!5.68!ZNF230;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.21!5.12!ZNF747;;chr17:7382856..7382889,-!p3@ZBTB4!0.21!5.12!ZBTB4;;chr16:71918033..71918101,-!p1@ZNF821!0.21!4.67!ZNF821;;chr19:12146483..12146546,-!p1@ZNF433!0.21!4.56!ZNF433;;chr19:46272106..46272115,-!p3@SIX5!0.21!3.23!SIX5;;chr10:94449675..94449694,+!p2@HHEX!0.21!3.12!HHEX;;chr16:3185125..3185173,+!p1@ZNF213!0.21!2.89!ZNF213;;chr19:35225078..35225120,+!p2@ZNF181!0.21!2.56!ZNF181;;chr10:63809134..63809145,+!p6@ARID5B!0.21!2.56!ARID5B;;chr4:146402925..146402957,+!p4@SMAD1!0.21!2.56!SMAD1;;chr3:126194815..126194848,-!p2@ZXDC!0.21!2.45!ZXDC;;chr5:180287681..180287694,-!p2@ZFP62!0.21!2.34!ZFP62;;chr14:89628064..89628109,-!p4@FOXN3!0.21!2.23!FOXN3;;chr6:21597514..21597578,+!p4@SOX4!0.21!1.67!SOX4;;chr9:20621927..20621996,-!p3@MLLT3!0.21!1.67!MLLT3;;chr5:178287021..178287042,+!p2@ZNF354B!0.21!1.56!ZNF354B;;chr11:3400442..3400453,-!p2@ZNF195!0.21!1.56!ZNF195;;chr14:64970451..64970473,-!p6@ZBTB25!0.21!1.56!ZBTB25;;chr4:87928166..87928186,+!p12@AFF1!0.21!1.45!AFF1;;chr15:67358128..67358133,+!p12@SMAD3!0.21!1.22!SMAD3;;chr2:46612334..46612349,+!p6@EPAS1!0.21!1.11!EPAS1;;chr11:57103283..57103290,-!p3@SSRP1!0.21!1.11!SSRP1;;chr14:69261310..69261326,-!p5@ZFP36L1!0.21!1.11!ZFP36L1;;chr16:4323323..4323333,-!p4@TFAP4!0.21!1.00!TFAP4;;
|sample_dev_stage=
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0007123,UBERON:0010316
|sample_tissue=thyroid
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.21
|rna_od260/280=2.08
|sample_cell_type=unclassifiable
|sample_cell_line=8305C
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=anaplastic carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=19.9385
|rna_concentration=0.79754
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10745,LSID692,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002046,UBERON:0002050,UBERON:0002368,UBERON:0002530,UBERON:0002532,UBERON:0003091,UBERON:0003104,UBERON:0004117,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005291,UBERON:0005423,UBERON:0005911,UBERON:0006562,UBERON:0007026,UBERON:0007123,UBERON:0007689,UBERON:0007690,UBERON:0008814,UBERON:0009142,UBERON:0009145
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|sample_description=
|fonse_cell_line=FF:0101120,FF:0101610
|fonse_cell_line=FF:0101120,FF:0101610
|fonse_cell_line_closure=FF:0101120,FF:0101610
|fonse_cell_line_closure=FF:0101120,FF:0101610
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=106
|rna_catalog_number=
|rna_concentration=0.79754
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.21
|rna_od260/280=2.08
|rna_position=D5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=106D5
|rna_weight_ug=19.9385
|sample_age=
|sample_category=cell lines
|sample_cell_catalog=RCB1909
|sample_cell_line=8305C
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=anaplastic carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.1118781386556e-219!GO:0043231;intracellular membrane-bound organelle;1.18931716210051e-173!GO:0043226;organelle;1.32210411155731e-173!GO:0043227;membrane-bound organelle;1.32210411155731e-173!GO:0043229;intracellular organelle;3.5487065767179e-173!GO:0005737;cytoplasm;1.51988582664306e-169!GO:0044444;cytoplasmic part;3.29473804923358e-114!GO:0044422;organelle part;1.04648232793683e-110!GO:0044446;intracellular organelle part;3.1278196160851e-109!GO:0044238;primary metabolic process;4.01992257553663e-87!GO:0044237;cellular metabolic process;4.97067906125322e-87!GO:0043170;macromolecule metabolic process;5.13121057875708e-84!GO:0005515;protein binding;5.82860948691282e-80!GO:0032991;macromolecular complex;1.32658624835848e-76!GO:0030529;ribonucleoprotein complex;4.77414304409965e-75!GO:0005634;nucleus;7.85929864657238e-73!GO:0003723;RNA binding;1.08179715476442e-66!GO:0043233;organelle lumen;7.68776731030566e-66!GO:0031974;membrane-enclosed lumen;7.68776731030566e-66!GO:0044428;nuclear part;1.29507606462453e-65!GO:0005739;mitochondrion;7.92530430901752e-56!GO:0019538;protein metabolic process;2.97874505121519e-51!GO:0043283;biopolymer metabolic process;6.4416551178607e-51!GO:0033036;macromolecule localization;1.35346818387171e-47!GO:0015031;protein transport;1.39347384247265e-47!GO:0010467;gene expression;1.95576882226528e-47!GO:0016043;cellular component organization and biogenesis;3.90650233829103e-47!GO:0006412;translation;1.82679304253214e-46!GO:0044260;cellular macromolecule metabolic process;2.82635763329076e-46!GO:0044267;cellular protein metabolic process;4.05909148783338e-46!GO:0005840;ribosome;1.52676324271752e-44!GO:0045184;establishment of protein localization;4.69950483231529e-44!GO:0008104;protein localization;9.49746690506848e-44!GO:0006396;RNA processing;5.13580537804277e-43!GO:0031090;organelle membrane;1.77127902091268e-42!GO:0031981;nuclear lumen;1.83179576639555e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.74712424534986e-40!GO:0003735;structural constituent of ribosome;9.11161307267924e-38!GO:0046907;intracellular transport;9.76563708713721e-38!GO:0009059;macromolecule biosynthetic process;6.20784854828332e-37!GO:0009058;biosynthetic process;1.82701181096489e-36!GO:0043234;protein complex;8.40873854431081e-36!GO:0016071;mRNA metabolic process;8.40873854431081e-36!GO:0044249;cellular biosynthetic process;9.5736838954609e-35!GO:0044429;mitochondrial part;1.05672789428285e-33!GO:0008380;RNA splicing;1.24939620445692e-33!GO:0005829;cytosol;1.74941064584316e-33!GO:0033279;ribosomal subunit;4.59999876834802e-33!GO:0006886;intracellular protein transport;3.47770381217297e-32!GO:0006397;mRNA processing;7.13639662494583e-31!GO:0031967;organelle envelope;2.51287255178479e-30!GO:0031975;envelope;3.98222082476038e-30!GO:0065003;macromolecular complex assembly;3.84336891634363e-27!GO:0005654;nucleoplasm;2.21942402792372e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.59649645456601e-25!GO:0003676;nucleic acid binding;1.78167553786485e-25!GO:0005681;spliceosome;3.587775821218e-25!GO:0051641;cellular localization;1.25292715091319e-24!GO:0051649;establishment of cellular localization;2.63324633649339e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.00069249314238e-24!GO:0022607;cellular component assembly;1.55239361098978e-23!GO:0016070;RNA metabolic process;1.58838492429029e-23!GO:0043228;non-membrane-bound organelle;3.21120105390487e-22!GO:0043232;intracellular non-membrane-bound organelle;3.21120105390487e-22!GO:0006996;organelle organization and biogenesis;3.44028415166094e-22!GO:0000166;nucleotide binding;1.55527576554416e-21!GO:0044451;nucleoplasm part;2.40266296452842e-21!GO:0019866;organelle inner membrane;1.85775864733378e-20!GO:0005740;mitochondrial envelope;3.41633910107591e-20!GO:0044445;cytosolic part;4.86342999421578e-20!GO:0008134;transcription factor binding;6.78795360405803e-20!GO:0006457;protein folding;8.0034235235992e-20!GO:0031966;mitochondrial membrane;9.63233995905703e-20!GO:0012505;endomembrane system;3.2580498121605e-19!GO:0005743;mitochondrial inner membrane;6.21025180106658e-19!GO:0016874;ligase activity;6.21567217227818e-19!GO:0006119;oxidative phosphorylation;1.19577552216236e-18!GO:0006512;ubiquitin cycle;1.19860858307918e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.28943053516509e-18!GO:0016462;pyrophosphatase activity;1.3842176706215e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.96781164737792e-18!GO:0017111;nucleoside-triphosphatase activity;6.94233271878495e-18!GO:0005794;Golgi apparatus;1.19816078420922e-17!GO:0022618;protein-RNA complex assembly;2.42591660215454e-17!GO:0006259;DNA metabolic process;2.51920907600087e-17!GO:0015934;large ribosomal subunit;3.69760280533642e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;9.91938302300198e-17!GO:0048770;pigment granule;1.13557985273595e-16!GO:0042470;melanosome;1.13557985273595e-16!GO:0019941;modification-dependent protein catabolic process;1.25328182818951e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.25328182818951e-16!GO:0015935;small ribosomal subunit;1.25328182818951e-16!GO:0006605;protein targeting;1.5005329024157e-16!GO:0043412;biopolymer modification;2.37580944230577e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.08276972926357e-16!GO:0044257;cellular protein catabolic process;3.48438864681118e-16!GO:0031980;mitochondrial lumen;5.54606872478018e-16!GO:0005759;mitochondrial matrix;5.54606872478018e-16!GO:0008135;translation factor activity, nucleic acid binding;1.10264591720743e-15!GO:0043285;biopolymer catabolic process;1.14671627427636e-15!GO:0005730;nucleolus;1.18735177049573e-15!GO:0005783;endoplasmic reticulum;1.28026871667649e-15!GO:0044265;cellular macromolecule catabolic process;1.35491941461027e-15!GO:0032553;ribonucleotide binding;1.64585406425779e-15!GO:0032555;purine ribonucleotide binding;1.64585406425779e-15!GO:0048193;Golgi vesicle transport;3.73243503342209e-15!GO:0050794;regulation of cellular process;3.97408746746881e-15!GO:0017076;purine nucleotide binding;4.9293125271416e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.88499280335567e-15!GO:0044455;mitochondrial membrane part;6.38680793729895e-15!GO:0016192;vesicle-mediated transport;9.47249858441145e-15!GO:0051082;unfolded protein binding;1.1170638311884e-14!GO:0006464;protein modification process;1.27456392224382e-14!GO:0030163;protein catabolic process;1.27456392224382e-14!GO:0051186;cofactor metabolic process;6.83869168267221e-14!GO:0009057;macromolecule catabolic process;1.16051753374438e-13!GO:0012501;programmed cell death;1.16051753374438e-13!GO:0006915;apoptosis;3.59926026577537e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.62887372611918e-13!GO:0006366;transcription from RNA polymerase II promoter;8.85096198253872e-13!GO:0044432;endoplasmic reticulum part;1.0033505024941e-12!GO:0005746;mitochondrial respiratory chain;1.16886400154398e-12!GO:0044248;cellular catabolic process;1.37061684930051e-12!GO:0007049;cell cycle;1.47189745326193e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.87131600167246e-12!GO:0003743;translation initiation factor activity;2.74589327585049e-12!GO:0008219;cell death;2.74589327585049e-12!GO:0016265;death;2.74589327585049e-12!GO:0048523;negative regulation of cellular process;2.74589327585049e-12!GO:0006913;nucleocytoplasmic transport;2.77189846654476e-12!GO:0005761;mitochondrial ribosome;2.80917068531474e-12!GO:0000313;organellar ribosome;2.80917068531474e-12!GO:0043687;post-translational protein modification;2.80917068531474e-12!GO:0050136;NADH dehydrogenase (quinone) activity;4.88240145205391e-12!GO:0003954;NADH dehydrogenase activity;4.88240145205391e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.88240145205391e-12!GO:0003712;transcription cofactor activity;5.82561198001235e-12!GO:0051169;nuclear transport;6.83791455829085e-12!GO:0016604;nuclear body;7.11614308857459e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.00057484644405e-11!GO:0006732;coenzyme metabolic process;1.44700783024637e-11!GO:0005524;ATP binding;1.97992945912659e-11!GO:0032559;adenyl ribonucleotide binding;3.08852654831625e-11!GO:0006413;translational initiation;3.47393160468165e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.05628879219862e-11!GO:0000375;RNA splicing, via transesterification reactions;4.05628879219862e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.05628879219862e-11!GO:0005793;ER-Golgi intermediate compartment;4.23487799524849e-11!GO:0005635;nuclear envelope;4.90605612845151e-11!GO:0050789;regulation of biological process;7.5791541281896e-11!GO:0030554;adenyl nucleotide binding;1.02205733761763e-10!GO:0048519;negative regulation of biological process;1.24452164230924e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.05663932848714e-10!GO:0006446;regulation of translational initiation;2.88434386106623e-10!GO:0031965;nuclear membrane;2.97625973149948e-10!GO:0008639;small protein conjugating enzyme activity;3.21101678153287e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.32665580711101e-10!GO:0045271;respiratory chain complex I;3.32665580711101e-10!GO:0005747;mitochondrial respiratory chain complex I;3.32665580711101e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.65102725937526e-10!GO:0042773;ATP synthesis coupled electron transport;3.65102725937526e-10!GO:0006974;response to DNA damage stimulus;6.19626486781737e-10!GO:0004842;ubiquitin-protein ligase activity;6.56737252049718e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.6250732916098e-10!GO:0016607;nuclear speck;9.75569934834656e-10!GO:0019787;small conjugating protein ligase activity;9.88229749136223e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.20754002451379e-09!GO:0003924;GTPase activity;1.23919332421625e-09!GO:0017038;protein import;1.28803976119901e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.49317917166546e-09!GO:0042254;ribosome biogenesis and assembly;3.40701620518239e-09!GO:0006399;tRNA metabolic process;5.31447915783241e-09!GO:0009055;electron carrier activity;5.35948120727602e-09!GO:0022402;cell cycle process;6.15827705771494e-09!GO:0005789;endoplasmic reticulum membrane;6.6723621241799e-09!GO:0051726;regulation of cell cycle;6.71525512730239e-09!GO:0005768;endosome;6.77115780641553e-09!GO:0009259;ribonucleotide metabolic process;9.29545039740872e-09!GO:0000074;regulation of progression through cell cycle;1.09274094154569e-08!GO:0016881;acid-amino acid ligase activity;1.38455189140016e-08!GO:0004386;helicase activity;1.38455189140016e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.39901702794654e-08!GO:0016564;transcription repressor activity;1.7067080460636e-08!GO:0006163;purine nucleotide metabolic process;1.78890915674616e-08!GO:0043067;regulation of programmed cell death;1.80589926555806e-08!GO:0006164;purine nucleotide biosynthetic process;1.99368501007189e-08!GO:0042981;regulation of apoptosis;2.12410466128505e-08!GO:0048522;positive regulation of cellular process;2.3274794403812e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.4149646978255e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.4149646978255e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.4149646978255e-08!GO:0044453;nuclear membrane part;2.42366276650223e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.61998903033448e-08!GO:0006461;protein complex assembly;2.66242875166615e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.20763260659871e-08!GO:0019222;regulation of metabolic process;3.47548103739691e-08!GO:0031324;negative regulation of cellular metabolic process;3.48300747368358e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.05978734354735e-08!GO:0043038;amino acid activation;4.05978734354735e-08!GO:0006418;tRNA aminoacylation for protein translation;4.05978734354735e-08!GO:0043039;tRNA aminoacylation;4.05978734354735e-08!GO:0051246;regulation of protein metabolic process;4.18377653059501e-08!GO:0009150;purine ribonucleotide metabolic process;4.19088722537546e-08!GO:0051188;cofactor biosynthetic process;4.2683006316653e-08!GO:0009260;ribonucleotide biosynthetic process;4.39761700304401e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.44228838688632e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.63287749345518e-08!GO:0044431;Golgi apparatus part;5.83943511965639e-08!GO:0006281;DNA repair;7.76488490048264e-08!GO:0015986;ATP synthesis coupled proton transport;8.0275421444825e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.0275421444825e-08!GO:0009060;aerobic respiration;8.92802117469107e-08!GO:0016887;ATPase activity;1.0538952511717e-07!GO:0009056;catabolic process;1.20619530060487e-07!GO:0008565;protein transporter activity;1.44878191625045e-07!GO:0051170;nuclear import;1.63270715831675e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.6517903511106e-07!GO:0043069;negative regulation of programmed cell death;1.73183210170212e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.73183210170212e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.25737262969431e-07!GO:0006916;anti-apoptosis;2.4584562561554e-07!GO:0005525;GTP binding;2.63173291356273e-07!GO:0006606;protein import into nucleus;2.88154410799246e-07!GO:0005667;transcription factor complex;3.0463048347725e-07!GO:0008026;ATP-dependent helicase activity;3.07775699060755e-07!GO:0030120;vesicle coat;3.4488009662836e-07!GO:0030662;coated vesicle membrane;3.4488009662836e-07!GO:0043066;negative regulation of apoptosis;3.55050511434802e-07!GO:0003714;transcription corepressor activity;4.11018475856659e-07!GO:0006403;RNA localization;4.11018475856659e-07!GO:0065007;biological regulation;4.20210805107849e-07!GO:0006323;DNA packaging;4.37345886773761e-07!GO:0042623;ATPase activity, coupled;4.97321675828977e-07!GO:0009108;coenzyme biosynthetic process;5.03962088326733e-07!GO:0045333;cellular respiration;5.06164335909698e-07!GO:0050657;nucleic acid transport;5.06164335909698e-07!GO:0051236;establishment of RNA localization;5.06164335909698e-07!GO:0050658;RNA transport;5.06164335909698e-07!GO:0009719;response to endogenous stimulus;5.87329121441149e-07!GO:0051276;chromosome organization and biogenesis;6.3630017490849e-07!GO:0019829;cation-transporting ATPase activity;6.5388339463248e-07!GO:0009892;negative regulation of metabolic process;6.78069830060352e-07!GO:0031252;leading edge;6.92716209122877e-07!GO:0009141;nucleoside triphosphate metabolic process;7.51391681663575e-07!GO:0045786;negative regulation of progression through cell cycle;7.51391681663575e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.62238745091244e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.66652578839796e-07!GO:0005643;nuclear pore;7.77934472688502e-07!GO:0048475;coated membrane;8.53328388308708e-07!GO:0030117;membrane coat;8.53328388308708e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.0331763625418e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.0331763625418e-06!GO:0016481;negative regulation of transcription;1.14341553984051e-06!GO:0019899;enzyme binding;1.15149685141619e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.20822533962111e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.20822533962111e-06!GO:0006793;phosphorus metabolic process;1.20822533962111e-06!GO:0006796;phosphate metabolic process;1.20822533962111e-06!GO:0046034;ATP metabolic process;1.21691462756088e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.2478285971834e-06!GO:0043566;structure-specific DNA binding;1.31030999530497e-06!GO:0006754;ATP biosynthetic process;1.37698513935441e-06!GO:0006753;nucleoside phosphate metabolic process;1.37698513935441e-06!GO:0032561;guanyl ribonucleotide binding;1.48006794669687e-06!GO:0019001;guanyl nucleotide binding;1.48006794669687e-06!GO:0007243;protein kinase cascade;1.52491092831194e-06!GO:0016563;transcription activator activity;1.55055133713469e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.60722919804875e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.60722919804875e-06!GO:0007005;mitochondrion organization and biogenesis;1.8199588601365e-06!GO:0065002;intracellular protein transport across a membrane;1.88435606150335e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.94208345323916e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.5966365579936e-06!GO:0016568;chromatin modification;3.11965895701104e-06!GO:0032446;protein modification by small protein conjugation;3.62695731687937e-06!GO:0006099;tricarboxylic acid cycle;3.79668897282449e-06!GO:0046356;acetyl-CoA catabolic process;3.79668897282449e-06!GO:0005770;late endosome;4.04255062396713e-06!GO:0044440;endosomal part;4.35357504273412e-06!GO:0010008;endosome membrane;4.35357504273412e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.92438742360561e-06!GO:0016567;protein ubiquitination;5.01686596117039e-06!GO:0000278;mitotic cell cycle;5.10585970258118e-06!GO:0000139;Golgi membrane;5.43374976322322e-06!GO:0016310;phosphorylation;5.79535432627797e-06!GO:0003713;transcription coactivator activity;6.85041914592383e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.28835476667731e-06!GO:0031323;regulation of cellular metabolic process;7.3158730301031e-06!GO:0016787;hydrolase activity;7.765237181627e-06!GO:0006084;acetyl-CoA metabolic process;8.73021943594124e-06!GO:0004298;threonine endopeptidase activity;9.18384177004293e-06!GO:0006613;cotranslational protein targeting to membrane;9.19419997623194e-06!GO:0031988;membrane-bound vesicle;9.31154533840218e-06!GO:0009117;nucleotide metabolic process;1.0871227057471e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.19197767636992e-05!GO:0005788;endoplasmic reticulum lumen;1.28089452453187e-05!GO:0000151;ubiquitin ligase complex;1.33043942488797e-05!GO:0006364;rRNA processing;1.37888730635444e-05!GO:0065004;protein-DNA complex assembly;1.40664908839182e-05!GO:0046930;pore complex;1.4854147926044e-05!GO:0009109;coenzyme catabolic process;1.63577194934283e-05!GO:0016072;rRNA metabolic process;1.6788255981986e-05!GO:0000245;spliceosome assembly;1.76917862808911e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.79305925106351e-05!GO:0051028;mRNA transport;1.84976569445232e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.85255738110905e-05!GO:0051187;cofactor catabolic process;2.00321882588152e-05!GO:0048518;positive regulation of biological process;2.05692787378997e-05!GO:0005798;Golgi-associated vesicle;2.06703048376665e-05!GO:0016740;transferase activity;2.14173941151045e-05!GO:0045259;proton-transporting ATP synthase complex;2.16555040678517e-05!GO:0006350;transcription;2.17201523261254e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.3770693213411e-05!GO:0005694;chromosome;2.39817249500254e-05!GO:0003697;single-stranded DNA binding;2.48152497290655e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.67761665234833e-05!GO:0005769;early endosome;2.77388096027524e-05!GO:0045893;positive regulation of transcription, DNA-dependent;2.83167774182209e-05!GO:0006752;group transfer coenzyme metabolic process;2.92681431288261e-05!GO:0031982;vesicle;3.47087800002968e-05!GO:0005773;vacuole;3.69838772063775e-05!GO:0016779;nucleotidyltransferase activity;4.20570786384375e-05!GO:0007264;small GTPase mediated signal transduction;4.45552509542306e-05!GO:0031410;cytoplasmic vesicle;4.92891070032669e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.03743167594256e-05!GO:0065009;regulation of a molecular function;5.69775774663329e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.38318243487169e-05!GO:0006260;DNA replication;7.02795068164062e-05!GO:0010468;regulation of gene expression;8.23475888605624e-05!GO:0045941;positive regulation of transcription;0.000100247378972257!GO:0006333;chromatin assembly or disassembly;0.000118801675056549!GO:0043623;cellular protein complex assembly;0.000118801675056549!GO:0000785;chromatin;0.000129264382864181!GO:0044427;chromosomal part;0.000129946331113833!GO:0003690;double-stranded DNA binding;0.000130675122584609!GO:0045892;negative regulation of transcription, DNA-dependent;0.000131347569086627!GO:0051427;hormone receptor binding;0.000132135800977175!GO:0008361;regulation of cell size;0.000137907015148566!GO:0043021;ribonucleoprotein binding;0.000139916491044344!GO:0009967;positive regulation of signal transduction;0.000145201868769322!GO:0051789;response to protein stimulus;0.000148722522967782!GO:0006986;response to unfolded protein;0.000148722522967782!GO:0005762;mitochondrial large ribosomal subunit;0.000150361841374619!GO:0000315;organellar large ribosomal subunit;0.000150361841374619!GO:0016197;endosome transport;0.000182062977820977!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000191539075249351!GO:0006612;protein targeting to membrane;0.000206956101923269!GO:0000323;lytic vacuole;0.000225645064958181!GO:0005764;lysosome;0.000225645064958181!GO:0016859;cis-trans isomerase activity;0.000227746896154573!GO:0030029;actin filament-based process;0.000230265849944883!GO:0035257;nuclear hormone receptor binding;0.000244494701280483!GO:0030867;rough endoplasmic reticulum membrane;0.000266033752251839!GO:0003724;RNA helicase activity;0.000267810373481772!GO:0033116;ER-Golgi intermediate compartment membrane;0.000269004513209152!GO:0005048;signal sequence binding;0.000273092648411164!GO:0006891;intra-Golgi vesicle-mediated transport;0.000319213169323212!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00031973110453272!GO:0016049;cell growth;0.00031973110453272!GO:0000314;organellar small ribosomal subunit;0.00031973110453272!GO:0005763;mitochondrial small ribosomal subunit;0.00031973110453272!GO:0008092;cytoskeletal protein binding;0.000340798498707699!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000409868891752207!GO:0001558;regulation of cell growth;0.000425441896654518!GO:0016853;isomerase activity;0.000425977278832444!GO:0048471;perinuclear region of cytoplasm;0.000433404239631909!GO:0007050;cell cycle arrest;0.000441343126280845!GO:0015980;energy derivation by oxidation of organic compounds;0.000453360721403214!GO:0016044;membrane organization and biogenesis;0.000511058772935221!GO:0016363;nuclear matrix;0.000518558048406039!GO:0005813;centrosome;0.000527745929620688!GO:0045454;cell redox homeostasis;0.000534606040577022!GO:0003729;mRNA binding;0.000625763908681176!GO:0032774;RNA biosynthetic process;0.00063526991802914!GO:0008047;enzyme activator activity;0.000674089708972706!GO:0030133;transport vesicle;0.000684685561665354!GO:0006351;transcription, DNA-dependent;0.000719852687932965!GO:0008250;oligosaccharyl transferase complex;0.000758083671533976!GO:0051168;nuclear export;0.000784954232062681!GO:0009165;nucleotide biosynthetic process;0.000822947435193618!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000825005329920844!GO:0005905;coated pit;0.000848077025376478!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00086180246818864!GO:0048468;cell development;0.000941005542751132!GO:0004860;protein kinase inhibitor activity;0.000964291269218453!GO:0004576;oligosaccharyl transferase activity;0.000965628398481265!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000971396990486043!GO:0008654;phospholipid biosynthetic process;0.000980236240357491!GO:0001726;ruffle;0.000987977729807216!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0010249274575316!GO:0015630;microtubule cytoskeleton;0.00103831311598028!GO:0003899;DNA-directed RNA polymerase activity;0.00109555574875088!GO:0005815;microtubule organizing center;0.00126087460213693!GO:0030663;COPI coated vesicle membrane;0.00126352200716189!GO:0030126;COPI vesicle coat;0.00126352200716189!GO:0004177;aminopeptidase activity;0.00128628493848419!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00136372274078692!GO:0009966;regulation of signal transduction;0.00145491370924564!GO:0006402;mRNA catabolic process;0.00150318686982691!GO:0005885;Arp2/3 protein complex;0.00165577043005509!GO:0006383;transcription from RNA polymerase III promoter;0.00168139775503787!GO:0005096;GTPase activator activity;0.00168968690431949!GO:0019843;rRNA binding;0.001864022022358!GO:0018196;peptidyl-asparagine modification;0.00191205856754471!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00191205856754471!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00196127109131844!GO:0006839;mitochondrial transport;0.00196713438521!GO:0031968;organelle outer membrane;0.0020271812603916!GO:0048500;signal recognition particle;0.00205697885944791!GO:0000049;tRNA binding;0.00205697885944791!GO:0045449;regulation of transcription;0.00209509155592468!GO:0051920;peroxiredoxin activity;0.00212443180848683!GO:0007242;intracellular signaling cascade;0.00215550878508184!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00219559160209201!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00219559160209201!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00219559160209201!GO:0019867;outer membrane;0.00226212665908253!GO:0030137;COPI-coated vesicle;0.00240392956963178!GO:0045792;negative regulation of cell size;0.00243694623946318!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0025249035987453!GO:0043681;protein import into mitochondrion;0.00262322616631983!GO:0006892;post-Golgi vesicle-mediated transport;0.00273819731849574!GO:0016491;oxidoreductase activity;0.00273853072941379!GO:0031072;heat shock protein binding;0.00275495253511645!GO:0030134;ER to Golgi transport vesicle;0.00276885601664045!GO:0008186;RNA-dependent ATPase activity;0.00298488772240851!GO:0035258;steroid hormone receptor binding;0.00301915240454099!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0030223189396097!GO:0045045;secretory pathway;0.00315204991208134!GO:0006626;protein targeting to mitochondrion;0.00326676932134217!GO:0006091;generation of precursor metabolites and energy;0.00336647956824661!GO:0022403;cell cycle phase;0.0034712171673537!GO:0051252;regulation of RNA metabolic process;0.0034712171673537!GO:0043488;regulation of mRNA stability;0.00347604397160633!GO:0043487;regulation of RNA stability;0.00347604397160633!GO:0000087;M phase of mitotic cell cycle;0.00349588826244901!GO:0008312;7S RNA binding;0.00372367716822423!GO:0030308;negative regulation of cell growth;0.00373607904512132!GO:0006352;transcription initiation;0.00378967644186905!GO:0051540;metal cluster binding;0.00385711177816265!GO:0051536;iron-sulfur cluster binding;0.00385711177816265!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00411499561552296!GO:0045047;protein targeting to ER;0.00411499561552296!GO:0046489;phosphoinositide biosynthetic process;0.00427794190433324!GO:0005741;mitochondrial outer membrane;0.00428831117315518!GO:0050790;regulation of catalytic activity;0.00428981060702354!GO:0044262;cellular carbohydrate metabolic process;0.00428981060702354!GO:0006414;translational elongation;0.00437397960228706!GO:0030127;COPII vesicle coat;0.00460068280978841!GO:0012507;ER to Golgi transport vesicle membrane;0.00460068280978841!GO:0051101;regulation of DNA binding;0.00460584065201125!GO:0051098;regulation of binding;0.00463446935409357!GO:0030132;clathrin coat of coated pit;0.00463446935409357!GO:0007067;mitosis;0.00470502154590934!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00473189347316549!GO:0030521;androgen receptor signaling pathway;0.00473189347316549!GO:0006520;amino acid metabolic process;0.00518214936096557!GO:0005791;rough endoplasmic reticulum;0.00552110796737318!GO:0043065;positive regulation of apoptosis;0.00561670393162161!GO:0003746;translation elongation factor activity;0.00581930558806509!GO:0007265;Ras protein signal transduction;0.0058222128903497!GO:0016272;prefoldin complex;0.00582839355324626!GO:0033673;negative regulation of kinase activity;0.00603759966892093!GO:0006469;negative regulation of protein kinase activity;0.00603759966892093!GO:0008243;plasminogen activator activity;0.00617926706609782!GO:0006417;regulation of translation;0.00638786001420364!GO:0043068;positive regulation of programmed cell death;0.0064279955438329!GO:0009893;positive regulation of metabolic process;0.00644577437694587!GO:0006401;RNA catabolic process;0.00644577437694587!GO:0019210;kinase inhibitor activity;0.00648323203257831!GO:0045926;negative regulation of growth;0.00648323203257831!GO:0048487;beta-tubulin binding;0.00648323203257831!GO:0008270;zinc ion binding;0.00649561200417567!GO:0051539;4 iron, 4 sulfur cluster binding;0.00664486651449065!GO:0006334;nucleosome assembly;0.00665139076840531!GO:0008234;cysteine-type peptidase activity;0.00673290441801982!GO:0006984;ER-nuclear signaling pathway;0.00687936399757329!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.006911056362567!GO:0051087;chaperone binding;0.00727802582177418!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0073331589598145!GO:0005099;Ras GTPase activator activity;0.007365869449043!GO:0030658;transport vesicle membrane;0.00738136385203896!GO:0042802;identical protein binding;0.00740886856514032!GO:0031901;early endosome membrane;0.00756070805400836!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00764553545187564!GO:0004004;ATP-dependent RNA helicase activity;0.00771408908488348!GO:0030659;cytoplasmic vesicle membrane;0.00771408908488348!GO:0040008;regulation of growth;0.00792561531280775!GO:0030880;RNA polymerase complex;0.00792561531280775!GO:0003711;transcription elongation regulator activity;0.00805965989568842!GO:0043433;negative regulation of transcription factor activity;0.00808638123104048!GO:0046483;heterocycle metabolic process;0.00816285548630704!GO:0007006;mitochondrial membrane organization and biogenesis;0.00828413369520209!GO:0030027;lamellipodium;0.00837727814582431!GO:0051329;interphase of mitotic cell cycle;0.00870398901053295!GO:0046474;glycerophospholipid biosynthetic process;0.00880091795384717!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00892545115429752!GO:0046914;transition metal ion binding;0.00917745281808486!GO:0007010;cytoskeleton organization and biogenesis;0.00921095643493832!GO:0008033;tRNA processing;0.00938276109205635!GO:0017166;vinculin binding;0.00994545806552644!GO:0045936;negative regulation of phosphate metabolic process;0.0100999403177841!GO:0006355;regulation of transcription, DNA-dependent;0.0101348088163318!GO:0050681;androgen receptor binding;0.010254211950775!GO:0043284;biopolymer biosynthetic process;0.010254211950775!GO:0031497;chromatin assembly;0.0111908930523222!GO:0030176;integral to endoplasmic reticulum membrane;0.0112859493004196!GO:0051348;negative regulation of transferase activity;0.0113412861911241!GO:0031902;late endosome membrane;0.0116077278041199!GO:0006595;polyamine metabolic process;0.0117468121987818!GO:0008139;nuclear localization sequence binding;0.011869231905972!GO:0000339;RNA cap binding;0.0119906552373307!GO:0005083;small GTPase regulator activity;0.0120336278393868!GO:0006405;RNA export from nucleus;0.0120410599075081!GO:0009615;response to virus;0.0122709459090713!GO:0051301;cell division;0.0125236187537134!GO:0006807;nitrogen compound metabolic process;0.012569042667843!GO:0006518;peptide metabolic process;0.0126462857214063!GO:0043022;ribosome binding;0.0126581762464242!GO:0006497;protein amino acid lipidation;0.012743136743322!GO:0031625;ubiquitin protein ligase binding;0.0129382862779276!GO:0030118;clathrin coat;0.013039754114621!GO:0009889;regulation of biosynthetic process;0.013272139602954!GO:0000118;histone deacetylase complex;0.0134337658905783!GO:0008283;cell proliferation;0.0134571130024437!GO:0044452;nucleolar part;0.0136310852362775!GO:0030032;lamellipodium biogenesis;0.0137101011302713!GO:0030518;steroid hormone receptor signaling pathway;0.0138200914104518!GO:0032940;secretion by cell;0.013859707108591!GO:0006509;membrane protein ectodomain proteolysis;0.0145519895146378!GO:0033619;membrane protein proteolysis;0.0145519895146378!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.014659713840755!GO:0015399;primary active transmembrane transporter activity;0.014659713840755!GO:0016251;general RNA polymerase II transcription factor activity;0.0148373316460964!GO:0006376;mRNA splice site selection;0.0150974823235641!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0150974823235641!GO:0051059;NF-kappaB binding;0.0151019550677383!GO:0044433;cytoplasmic vesicle part;0.0152207261221359!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0152207261221359!GO:0000428;DNA-directed RNA polymerase complex;0.0152207261221359!GO:0046822;regulation of nucleocytoplasmic transport;0.0155265864982621!GO:0008180;signalosome;0.0157446367147958!GO:0005869;dynactin complex;0.0158292221754359!GO:0051325;interphase;0.0159380560549305!GO:0005774;vacuolar membrane;0.0159932782855069!GO:0012506;vesicle membrane;0.0161130241632102!GO:0003702;RNA polymerase II transcription factor activity;0.0164636510970059!GO:0043549;regulation of kinase activity;0.0164636510970059!GO:0016584;nucleosome positioning;0.0164636510970059!GO:0003684;damaged DNA binding;0.0164636510970059!GO:0005684;U2-dependent spliceosome;0.0168913128750487!GO:0018193;peptidyl-amino acid modification;0.017055661812433!GO:0006818;hydrogen transport;0.0171439820744931!GO:0030041;actin filament polymerization;0.0171667305358538!GO:0051338;regulation of transferase activity;0.0173016591199603!GO:0008632;apoptotic program;0.0173201538459204!GO:0032507;maintenance of cellular protein localization;0.0173201538459204!GO:0006261;DNA-dependent DNA replication;0.0173201538459204!GO:0050811;GABA receptor binding;0.0176860113019148!GO:0000096;sulfur amino acid metabolic process;0.0179256413424196!GO:0048144;fibroblast proliferation;0.018203986273352!GO:0048145;regulation of fibroblast proliferation;0.018203986273352!GO:0031529;ruffle organization and biogenesis;0.0185653088390826!GO:0030660;Golgi-associated vesicle membrane;0.0185903519859622!GO:0048146;positive regulation of fibroblast proliferation;0.0191226630111582!GO:0003779;actin binding;0.0191484019669598!GO:0006950;response to stress;0.0197203476355178!GO:0031326;regulation of cellular biosynthetic process;0.0197483304435867!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0198398094759853!GO:0022406;membrane docking;0.0200003690673279!GO:0048278;vesicle docking;0.0200003690673279!GO:0005637;nuclear inner membrane;0.020122724852327!GO:0022415;viral reproductive process;0.0203493943115777!GO:0001952;regulation of cell-matrix adhesion;0.0204662556669228!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0208846086024717!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0208846086024717!GO:0046467;membrane lipid biosynthetic process;0.021095804262653!GO:0006607;NLS-bearing substrate import into nucleus;0.0212166638564004!GO:0030384;phosphoinositide metabolic process;0.0212166638564004!GO:0051287;NAD binding;0.0213148547055868!GO:0046426;negative regulation of JAK-STAT cascade;0.0224156722253331!GO:0007030;Golgi organization and biogenesis;0.0225590272880874!GO:0015992;proton transport;0.0226229000688988!GO:0042326;negative regulation of phosphorylation;0.0233291953198589!GO:0019752;carboxylic acid metabolic process;0.0233674168426132!GO:0008097;5S rRNA binding;0.0234310205352853!GO:0030145;manganese ion binding;0.0236018618542131!GO:0031325;positive regulation of cellular metabolic process;0.023616114847551!GO:0043407;negative regulation of MAP kinase activity;0.0238881085303264!GO:0006082;organic acid metabolic process;0.0239559072460684!GO:0030031;cell projection biogenesis;0.0245749360596294!GO:0003682;chromatin binding;0.0249376913083228!GO:0030224;monocyte differentiation;0.0255131630845239!GO:0001666;response to hypoxia;0.0257263635526902!GO:0005100;Rho GTPase activator activity;0.0259962841441837!GO:0042158;lipoprotein biosynthetic process;0.0259962841441837!GO:0006354;RNA elongation;0.0263106687533058!GO:0007004;telomere maintenance via telomerase;0.0265460597299768!GO:0043495;protein anchor;0.0265462903794159!GO:0051270;regulation of cell motility;0.0274885312482037!GO:0000287;magnesium ion binding;0.0275149345648608!GO:0004674;protein serine/threonine kinase activity;0.0275389011996411!GO:0000059;protein import into nucleus, docking;0.0278998514743933!GO:0003678;DNA helicase activity;0.0282355124649923!GO:0005832;chaperonin-containing T-complex;0.0286190809587928!GO:0045859;regulation of protein kinase activity;0.0291301648378483!GO:0006302;double-strand break repair;0.0293904630265129!GO:0006904;vesicle docking during exocytosis;0.0298024994354201!GO:0008637;apoptotic mitochondrial changes;0.0302116363416031!GO:0009308;amine metabolic process;0.0303317467134588!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0305340802907452!GO:0046519;sphingoid metabolic process;0.0311345306188725!GO:0051052;regulation of DNA metabolic process;0.0314019726239851!GO:0006897;endocytosis;0.0316577341356966!GO:0010324;membrane invagination;0.0316577341356966!GO:0000060;protein import into nucleus, translocation;0.0318639956653695!GO:0031543;peptidyl-proline dioxygenase activity;0.0319784994816282!GO:0004680;casein kinase activity;0.0319784994816282!GO:0008154;actin polymerization and/or depolymerization;0.0319808546576802!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0321650115793349!GO:0031124;mRNA 3'-end processing;0.0324106041163792!GO:0000792;heterochromatin;0.032760223740123!GO:0032200;telomere organization and biogenesis;0.033403677120434!GO:0000723;telomere maintenance;0.033403677120434!GO:0035035;histone acetyltransferase binding;0.0336971404353559!GO:0045428;regulation of nitric oxide biosynthetic process;0.0338493195817344!GO:0051272;positive regulation of cell motility;0.0342276190094138!GO:0040017;positive regulation of locomotion;0.0342276190094138!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0344537516298383!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0344537516298383!GO:0007034;vacuolar transport;0.0347240978090282!GO:0032906;transforming growth factor-beta2 production;0.0347880329372651!GO:0032909;regulation of transforming growth factor-beta2 production;0.0347880329372651!GO:0051651;maintenance of cellular localization;0.0350924350266957!GO:0006650;glycerophospholipid metabolic process;0.0352811859674496!GO:0051128;regulation of cellular component organization and biogenesis;0.0353979849653172!GO:0044437;vacuolar part;0.0354468833013474!GO:0005669;transcription factor TFIID complex;0.0355232968585485!GO:0022890;inorganic cation transmembrane transporter activity;0.0355232968585485!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0355479359690466!GO:0007040;lysosome organization and biogenesis;0.0359561438794968!GO:0016407;acetyltransferase activity;0.0377195195723027!GO:0009112;nucleobase metabolic process;0.0377838268761561!GO:0005862;muscle thin filament tropomyosin;0.0387984383332641!GO:0007041;lysosomal transport;0.0389069881853808!GO:0006506;GPI anchor biosynthetic process;0.0395227685356465!GO:0030119;AP-type membrane coat adaptor complex;0.0395555543252315!GO:0007162;negative regulation of cell adhesion;0.0395865820793098!GO:0022408;negative regulation of cell-cell adhesion;0.0396445195319497!GO:0006740;NADPH regeneration;0.0396445195319497!GO:0006098;pentose-phosphate shunt;0.0396445195319497!GO:0008286;insulin receptor signaling pathway;0.0396445195319497!GO:0005765;lysosomal membrane;0.040109785073348!GO:0033239;negative regulation of amine metabolic process;0.0403093250858578!GO:0045763;negative regulation of amino acid metabolic process;0.0403093250858578!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0403093250858578!GO:0008538;proteasome activator activity;0.0403093250858578!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0410312229691795!GO:0006917;induction of apoptosis;0.0425583292266502!GO:0019798;procollagen-proline dioxygenase activity;0.0427934663186299!GO:0043624;cellular protein complex disassembly;0.0431847744160888!GO:0030522;intracellular receptor-mediated signaling pathway;0.0433974017518624!GO:0006378;mRNA polyadenylation;0.0439147356092407!GO:0007033;vacuole organization and biogenesis;0.0448285452283579!GO:0032318;regulation of Ras GTPase activity;0.0450679785690907!GO:0030984;kininogen binding;0.0455319937177315!GO:0004213;cathepsin B activity;0.0455319937177315!GO:0045185;maintenance of protein localization;0.0458419728279803!GO:0006519;amino acid and derivative metabolic process;0.0459107437435229!GO:0006611;protein export from nucleus;0.0462262990017143!GO:0016301;kinase activity;0.0473425483412638!GO:0017134;fibroblast growth factor binding;0.0473712916418682!GO:0043087;regulation of GTPase activity;0.0474096439689378!GO:0030833;regulation of actin filament polymerization;0.0474096439689378!GO:0009303;rRNA transcription;0.0476541318994735!GO:0006505;GPI anchor metabolic process;0.0480240015847657!GO:0040011;locomotion;0.0480240015847657!GO:0030125;clathrin vesicle coat;0.0483263582762223!GO:0030665;clathrin coated vesicle membrane;0.0483263582762223!GO:0005720;nuclear heterochromatin;0.0485393196829018!GO:0030100;regulation of endocytosis;0.0485393196829018!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0485393196829018!GO:0015002;heme-copper terminal oxidase activity;0.0485393196829018!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0485393196829018!GO:0004129;cytochrome-c oxidase activity;0.0485393196829018!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.048662536930507!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.048662536930507!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.048662536930507!GO:0006289;nucleotide-excision repair;0.0488583947003823!GO:0006338;chromatin remodeling;0.0490714062022498!GO:0019783;small conjugating protein-specific protease activity;0.0493518689666274!GO:0007021;tubulin folding;0.0493518689666274!GO:0050662;coenzyme binding;0.0497373054925989!GO:0031371;ubiquitin conjugating enzyme complex;0.0499282176603185
|sample_id=10428
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=thyroid
|top_motifs=NKX2-1,4:2.02671835886;NKX3-1:1.617003361;EN1,2:1.47844367434;NFIX:1.31515308015;bHLH_family:1.15622804955;HBP1_HMGB_SSRP1_UBTF:1.09678594036;HIF1A:1.01475358668;EVI1:1.01151918087;AIRE:1.00106992477;PAX5:1.00054613577;TFDP1:0.973749769304;RXR{A,B,G}:0.924602930724;FOXA2:0.915437000062;DBP:0.908729789657;PAX4:0.905622221986;GTF2A1,2:0.87064598238;TBX4,5:0.864825477491;ZBTB16:0.809843093262;ELK1,4_GABP{A,B1}:0.804001927021;ATF6:0.785413927192;FOXP1:0.770953720226;ZFP161:0.769820581701;PITX1..3:0.753722635774;HOX{A4,D4}:0.6787277893;ONECUT1,2:0.675462133912;POU1F1:0.634033534893;ALX1:0.596210382622;AHR_ARNT_ARNT2:0.591915014259;MAFB:0.573094207432;LHX3,4:0.557852396129;IRF7:0.553789357351;FOXL1:0.530704564721;HLF:0.530167044679;PPARG:0.528281257411;IRF1,2:0.528112305289;NHLH1,2:0.516914854813;CEBPA,B_DDIT3:0.513496089148;TLX1..3_NFIC{dimer}:0.495520690186;BPTF:0.482235573961;DMAP1_NCOR{1,2}_SMARC:0.450714184057;PRDM1:0.433486861174;SP1:0.425795928342;MTE{core}:0.425415387385;NKX2-2,8:0.409873389188;TFAP2{A,C}:0.386786404727;CDC5L:0.377585452822;VSX1,2:0.37336774332;MED-1{core}:0.364750648534;ARID5B:0.361915142762;TEAD1:0.358290196339;FOX{D1,D2}:0.354561589382;FOXQ1:0.347286482938;STAT5{A,B}:0.345598166056;MAZ:0.342561681152;UFEwm:0.318248813782;HIC1:0.31119312307;HOXA9_MEIS1:0.300897693183;NKX3-2:0.300683469256;PATZ1:0.286186686778;FOS_FOS{B,L1}_JUN{B,D}:0.260623645744;TEF:0.247043601498;HSF1,2:0.244842825724;ATF5_CREB3:0.241212558275;TOPORS:0.240037092512;BACH2:0.235391185001;POU2F1..3:0.231616078412;CDX1,2,4:0.228121832722;NRF1:0.224989766713;EGR1..3:0.218594957516;FOSL2:0.216116814315;EP300:0.212676870306;FOXO1,3,4:0.19436610153;FOX{F1,F2,J1}:0.189193138388;POU5F1:0.189144548473;ELF1,2,4:0.181562901522;NFKB1_REL_RELA:0.177161613161;NFE2:0.160749305805;TFAP2B:0.158488168781;ZBTB6:0.157013734554;NFATC1..3:0.156735512945;HES1:0.149339162284;GZF1:0.148716619547;FOX{I1,J2}:0.143431244972;PAX8:0.133005353382;ATF4:0.131807304446;AR:0.12898649159;NKX6-1,2:0.117504439534;FOXN1:0.112664056322;CRX:0.107467353888;MYFfamily:0.105386276487;MYBL2:0.103848862052;SRF:0.0731929722078;SOX17:0.0715044083848;MZF1:0.0642575215622;MTF1:0.0617955964998;STAT2,4,6:0.0607084150174;SOX{8,9,10}:0.0575665367547;POU3F1..4:0.0563681521808;ZNF238:0.0537043016163;SPZ1:0.0501740945517;TBP:0.0233958957656;GFI1B:0.0218200960807;RREB1:0.0125855251191;NR6A1:0.00107842376824;ZNF143:-0.00617871555207;BREu{core}:-0.00648762674336;FOXD3:-0.0145189312237;HOX{A5,B5}:-0.0295855119173;ADNP_IRX_SIX_ZHX:-0.0408518919235;NFE2L2:-0.0411310125143;HNF1A:-0.0414941969194;LEF1_TCF7_TCF7L1,2:-0.0838493606291;GATA6:-0.0900804642917;HMGA1,2:-0.10256266581;SOX2:-0.127275291426;REST:-0.128086779768;YY1:-0.135429882743;GTF2I:-0.136020760658;T:-0.138531162542;ETS1,2:-0.141996604548;SREBF1,2:-0.15634681561;RUNX1..3:-0.177558905687;XCPE1{core}:-0.186085023913;POU6F1:-0.199674641605;TLX2:-0.21355128983;NFY{A,B,C}:-0.217179793207;SPI1:-0.217286905383;CUX2:-0.221243142353;TP53:-0.223704589261;EBF1:-0.240593608529;RORA:-0.257403166936;ZNF384:-0.260994486022;XBP1:-0.264149719458;PAX2:-0.273801935005;MYOD1:-0.301682040218;NFIL3:-0.310422291977;RFX1:-0.32232530197;MEF2{A,B,C,D}:-0.340668831396;NR3C1:-0.363128642129;GLI1..3:-0.369586134901;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.400900675153;NR1H4:-0.40105293741;HMX1:-0.402094987907;KLF4:-0.403376867232;PRRX1,2:-0.416418081206;ZEB1:-0.421960263667;SOX5:-0.425870023794;IKZF2:-0.431402626759;SPIB:-0.436722408054;TAL1_TCF{3,4,12}:-0.437856177768;HNF4A_NR2F1,2:-0.440206352804;PAX3,7:-0.443308148631;ALX4:-0.456935073598;GFI1:-0.466957641073;SMAD1..7,9:-0.471271403296;ATF2:-0.474546699606;STAT1,3:-0.47788339954;MYB:-0.481245864941;PDX1:-0.490400078027;NFE2L1:-0.490968333325;PAX6:-0.497600212616;RFX2..5_RFXANK_RFXAP:-0.501275008416;IKZF1:-0.50342528897;PBX1:-0.506214408286;E2F1..5:-0.509007444339;TFCP2:-0.509063049014;ZIC1..3:-0.525457555456;TGIF1:-0.537003491657;TFAP4:-0.544708019315;HAND1,2:-0.546572523293;ZNF423:-0.5547825524;ZNF148:-0.605820035703;FOXP3:-0.611596661929;RBPJ:-0.644405558695;RXRA_VDR{dimer}:-0.64631634962;OCT4_SOX2{dimer}:-0.685769628172;FOXM1:-0.692419847695;CREB1:-0.742115698239;NANOG{mouse}:-0.769590869622;LMO2:-0.774055313491;JUN:-0.777430631825;NKX2-3_NKX2-5:-0.844197836068;SNAI1..3:-0.846652397775;GATA4:-0.86975073851;GCM1,2:-0.935541808184;ESR1:-1.01197590083;PAX1,9:-1.06965912743;HOX{A6,A7,B6,B7}:-1.1322636278;NANOG:-1.15740364088;ESRRA:-1.1955859622;NR5A1,2:-1.79244209627;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.99476241037
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10428-106D5;search_select_hide=table117:FF:10428-106D5
}}
}}

Latest revision as of 14:01, 3 June 2020

Name:anaplastic carcinoma cell line:8305C
Species:Human (Homo sapiens)
Library ID:CNhs10745
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethyroid
dev stageNA
sexunknown
ageNA
cell typeunclassifiable
cell line8305C
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005691
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10745 CAGE DRX007826 DRR008698
Accession ID Hg19

Library idBAMCTSS
CNhs10745 DRZ000123 DRZ001508
Accession ID Hg38

Library idBAMCTSS
CNhs10745 DRZ011473 DRZ012858
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0569
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.177
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0458
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0458
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0458
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.00521
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0389
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.186
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0458
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0824
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.45
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0873
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0351
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0458
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00558
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0458
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.334
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0494
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0694
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.16
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.008
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10745

Jaspar motifP-value
MA0002.20.0593
MA0003.10.0963
MA0004.10.976
MA0006.10.851
MA0007.10.0708
MA0009.10.477
MA0014.10.776
MA0017.15.2888e-4
MA0018.20.00571
MA0019.10.19
MA0024.10.534
MA0025.10.921
MA0027.10.77
MA0028.10.00372
MA0029.10.451
MA0030.10.247
MA0031.10.0364
MA0035.20.486
MA0038.10.473
MA0039.20.252
MA0040.10.898
MA0041.10.387
MA0042.10.761
MA0043.10.566
MA0046.10.5
MA0047.20.0559
MA0048.10.255
MA0050.14.22286e-8
MA0051.11.10064e-6
MA0052.10.0458
MA0055.10.931
MA0057.10.153
MA0058.10.741
MA0059.10.415
MA0060.10.33
MA0061.10.971
MA0062.20.0838
MA0065.22.61773e-4
MA0066.10.043
MA0067.10.0356
MA0068.10.395
MA0069.10.445
MA0070.10.13
MA0071.10.0125
MA0072.10.18
MA0073.10.261
MA0074.10.998
MA0076.10.00398
MA0077.10.453
MA0078.10.726
MA0079.20.416
MA0080.21.00156e-4
MA0081.10.567
MA0083.10.424
MA0084.10.237
MA0087.10.297
MA0088.10.297
MA0090.10.0237
MA0091.10.0641
MA0092.10.18
MA0093.10.844
MA0099.25.15885e-5
MA0100.10.628
MA0101.10.181
MA0102.20.115
MA0103.10.0469
MA0104.20.752
MA0105.10.12
MA0106.10.288
MA0107.10.072
MA0108.20.27
MA0111.10.439
MA0112.21.00023e-4
MA0113.10.257
MA0114.10.00632
MA0115.10.0136
MA0116.10.00467
MA0117.10.494
MA0119.10.966
MA0122.10.78
MA0124.10.661
MA0125.10.498
MA0131.10.128
MA0135.10.128
MA0136.10.356
MA0137.20.554
MA0138.20.0888
MA0139.10.526
MA0140.10.8
MA0141.18.40797e-4
MA0142.10.0182
MA0143.10.658
MA0144.10.382
MA0145.10.0565
MA0146.10.00364
MA0147.10.66
MA0148.10.287
MA0149.10.834
MA0150.10.251
MA0152.10.0315
MA0153.10.611
MA0154.10.0135
MA0155.10.356
MA0156.10.152
MA0157.10.362
MA0159.10.211
MA0160.10.014
MA0162.10.373
MA0163.19.25566e-4
MA0164.10.0637
MA0258.10.00123
MA0259.10.827



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10745

Novel motifP-value
10.115
100.313
1000.98
1010.573
1020.119
1030.176
1040.471
1050.124
1060.584
1070.641
1080.495
1090.0768
110.243
1100.705
1110.352
1120.00396
1130.107
1140.083
1150.239
1160.526
1170.419
1180.925
1190.32
120.655
1200.715
1210.558
1220.0238
1230.617
1240.409
1250.789
1260.446
1270.188
1280.379
1290.158
130.213
1300.685
1310.535
1320.993
1330.737
1340.691
1350.652
1360.397
1370.851
1380.501
1390.941
140.224
1400.012
1410.0308
1420.122
1430.832
1440.908
1450.969
1460.931
1470.71
1480.0647
1490.474
150.813
1500.789
1510.408
1520.18
1530.555
1540.844
1550.173
1560.536
1570.907
1580.345
1590.604
160.257
1600.0969
1610.749
1620.581
1630.109
1640.374
1650.955
1660.613
1670.533
1680.0427
1690.00728
170.166
180.784
190.212
20.455
200.387
210.713
220.0598
230.949
240.395
250.225
260.418
270.135
280.893
290.286
30.66
300.671
310.255
320.00641
330.903
340.0584
350.748
360.454
370.198
380.165
390.799
40.384
400.0861
410.0103
420.901
430.156
440.034
450.61
460.394
470.128
480.329
490.0929
50.863
500.978
510.124
520.204
530.634
540.296
550.162
560.317
570.688
580.108
590.0101
60.65
600.0752
610.293
620.0388
630.589
640.526
650.26
660.945
670.911
680.94
690.526
70.0466
700.164
710.189
720.372
730.0822
740.269
750.294
760.397
770.052
780.153
790.576
80.215
800.205
810.397
820.0595
830.315
840.684
850.194
860.885
870.425
880.873
890.0342
90.279
900.766
910.52
920.283
930.819
940.585
950.0534
960.0968
970.638
980.00228
990.366



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10745


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103209 (anaplastic thyroid cancer cell line sample)
0101610 (thyroid cancer cell line sample)
0100919 (8305C cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)

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