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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001310,UBERON:0001637,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004572,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00004880
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002594
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004880
|accession_numbers=CAGE;DRX008513;DRR009385;DRZ000810;DRZ002195;DRZ012160;DRZ013545
|accession_numbers_RNASeq=sRNA-Seq;DRX037253;DRR041619;DRZ007261
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000176
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.98!94.16!SOX17;;chr11:34642612..34642646,+!p1@EHF!1.58!37.45!EHF;;chr11:46299199..46299233,+!p1@CREB3L1!1.53!163.71!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!1.18!14.27!HOXC10;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.54!CREB3L1;;chr4:81118647..81118666,+!p1@PRDM8!1.14!17.12!PRDM8;;chr16:86600426..86600441,+!p1@FOXC2!1.12!29.96!FOXC2;;chr6:34204921..34204939,+!p3@HMGA1!1.11!352.39!HMGA1;;chr12:54378923..54378966,+!p1@HOXC10!1.07!10.70!HOXC10;;chr4:111558135..111558198,-!p2@PITX2!1.04!9.99!PITX2;;chr1:151032860..151032918,+!p1@MLLT11!1.03!115.92!MLLT11;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.63!MAFK;;chr12:66218255..66218304,+!p3@HMGA2!1.02!25.68!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.02!13.91!HOXB7;;chr18:19749386..19749404,+!p2@GATA6!1.01!13.20!GATA6;;chr18:19749541..19749557,+!p1@GATA6!1.00!28.89!GATA6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.00!8.92!HOXC5;;chr9:35732647..35732678,+!p2@CREB3!0.99!50.29!CREB3;;chr7:27224842..27224872,-!p1@HOXA11!0.98!8.56!HOXA11;;chr12:26277817..26277863,-!p2@BHLHE41!0.96!11.06!BHLHE41;;chr4:174450089..174450153,-!p2@HAND2!0.96!8.20!HAND2;;chr9:35732514..35732530,+!p5@CREB3!0.94!11.06!CREB3;;chr11:61520075..61520136,+!p1@C11orf9!0.93!16.41!C11orf9;;chr1:151032922..151032951,+!p2@MLLT11!0.93!12.84!MLLT11;;chr12:66218598..66218645,+!p2@HMGA2!0.92!35.31!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.92!12.48!FOXD1;;chr12:66218836..66218888,+!p1@HMGA2!0.91!70.26!HMGA2;;chr12:54380036..54380091,+!p4@HOXC10!0.91!7.13!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.91!7.13!HOXC9;;chr5:72744594..72744609,-!p1@FOXD1!0.90!33.53!FOXD1;;chr11:65686802..65686818,+!p6@DRAP1!0.89!12.13!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.75!FOSL1;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.32!DRAP1;;chr1:8938709..8938720,-!p3@ENO1!0.84!302.81!ENO1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.83!77.04!ZC3H12A;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.68!DRAP1;;chr19:42636586..42636607,-!p1@POU2F2!0.83!16.76!POU2F2;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.71!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.71!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!0.83!5.71!HOXB6;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.49!HOXB7;;chr12:66218923..66218934,+!p14@HMGA2!0.80!5.35!HMGA2;;chr6:134210243..134210257,+!p1@TCF21!0.80!5.35!TCF21;;chr17:59477275..59477286,+!p3@TBX2!0.79!7.13!TBX2;;chr9:35732592..35732640,+!p1@CREB3!0.78!72.05!CREB3;;chr12:124873357..124873401,-!p1@NCOR2!0.78!63.13!NCOR2;;chr12:54402790..54402805,+!p2@HOXC8!0.78!4.99!HOXC8;;chr7:27224795..27224840,-!p2@HOXA11!0.78!4.99!HOXA11;;chr19:45908292..45908374,-!p1@PPP1R13L!0.77!47.79!PPP1R13L;;chr10:94449703..94449718,+!p1@HHEX!0.75!19.62!HHEX;;chr7:27205106..27205134,-!p2@HOXA9!0.75!4.64!HOXA9;;chr4:111544219..111544240,-!p1@PITX2!0.75!4.64!PITX2;;chrY:21906594..21906622,-!p1@KDM5D!0.75!4.64!KDM5D;;chr16:86600870..86600921,+!p2@FOXC2!0.75!4.64!FOXC2;;chr3:25469724..25469773,+!p1@RARB!0.74!6.78!RARB;;chr17:3571863..3571881,-!p1@TAX1BP3!0.73!352.03!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.73!130.54!FOSL1;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.99!SMAD3;;chr20:50721803..50721857,-!p2@ZFP64!0.72!7.13!ZFP64;;chr11:34642656..34642667,+!p2@EHF!0.72!4.28!EHF;;chr12:54366975..54367001,+!p1@HOXC11!0.72!4.28!HOXC11;;chr20:42543441..42543497,+!p1@TOX2!0.71!20.69!TOX2;;chr12:26277956..26277980,-!p1@BHLHE41!0.71!16.41!BHLHE41;;chr17:59477233..59477263,+!p1@TBX2!0.71!14.27!TBX2;;chr12:80085120..80085156,-!p14@PAWR!0.69!3.92!PAWR;;chr2:176969228..176969260,+!p1@HOXD11!0.69!3.92!HOXD11;;chr8:145159846..145159889,+!p6@MAF1!0.68!5.71!MAF1;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.71!BHLHE41;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.99!SMAD3;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.35!HMGA1;;chr1:170633262..170633285,+!p3@PRRX1!0.67!4.28!PRRX1;;chr7:150945865..150945896,-!p4@SMARCD3!0.66!3.57!SMARCD3;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.57!HOXA7;;chr7:35293685..35293718,-!p1@TBX20!0.66!3.57!TBX20;;chr15:67458491..67458505,+!p18@SMAD3!0.66!3.57!SMAD3;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.18!DRAP1;;chr2:200322654..200322707,-!p2@SATB2!0.65!5.35!SATB2;;chr2:192015701..192015743,-!p1@STAT4!0.65!4.99!STAT4;;chr22:38598086..38598105,+!p1@MAFF!0.64!41.73!MAFF;;chr12:80085061..80085119,-!p6@PAWR!0.64!5.71!PAWR;;chr5:134369905..134369972,-!p1@PITX1!0.63!5.35!PITX1;;chr6:34204672..34204692,+!p1@HMGA1!0.62!426.94!HMGA1;;chr2:239756671..239756732,+!p1@TWIST2!0.62!11.77!TWIST2;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.63!ARNTL2;;chr12:54379029..54379057,+!p2@HOXC10!0.62!3.21!HOXC10;;chr11:65686952..65686975,+!p5@DRAP1!0.61!19.97!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.61!5.71!TWIST2;;chr6:85473156..85473210,-!p2@TBX18!0.61!3.92!TBX18;;chr1:8938736..8938756,-!p1@ENO1!0.60!3984.73!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.60!248.60!ENO1;;chr20:42543506..42543549,+!p2@TOX2!0.60!8.20!TOX2;;chr4:103423079..103423112,+!p4@NFKB1!0.59!2.85!NFKB1;;chr4:174451370..174451387,-!p1@HAND2!0.59!2.85!HAND2;;chr18:19749353..19749367,+!p4@GATA6!0.59!2.85!GATA6;;chr12:54380112..54380126,+!p5@HOXC10!0.59!2.85!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.59!2.85!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.85!HOXC5;;chr12:66357214..66357233,+!p13@HMGA2!0.59!2.85!HMGA2;;chr1:151032782..151032801,+!p4@MLLT11!0.58!6.42!MLLT11;;chr12:27485889..27485900,+!p4@ARNTL2!0.58!3.57!ARNTL2;;chr11:46299186..46299195,+!p3@CREB3L1!0.58!3.21!CREB3L1;;chr2:71127699..71127744,+!p1@VAX2!0.57!6.42!VAX2;;chr1:151032739..151032748,+!p6@MLLT11!0.57!3.57!MLLT11;;chr7:44143925..44143970,+!p1@AEBP1!0.55!71.69!AEBP1;;chr21:30671690..30671762,+!p2@BACH1!0.55!10.34!BACH1;;chr19:45260775..45260838,+!p5@BCL3!0.55!3.57!BCL3;;chr11:65686776..65686787,+!p9@DRAP1!0.55!3.21!DRAP1;;chr5:72744562..72744573,-!p3@FOXD1!0.54!3.21!FOXD1;;chr6:43140095..43140145,+!p5@SRF!0.54!3.21!SRF;;chr7:27170359..27170381,-!p1@HOXA4!0.54!2.50!HOXA4;;chr7:27205136..27205164,-!p1@HOXA9!0.54!2.50!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.54!2.50!SOX17;;chr11:46299443..46299459,+!p4@CREB3L1!0.54!2.50!CREB3L1;;chr12:54379136..54379150,+!p4@HOXC5!0.54!2.50!HOXC5;;chr3:141087562..141087594,+!p12@ZBTB38!0.54!2.50!ZBTB38;;chr3:25470156..25470227,+!p2@RARB!0.54!2.50!RARB;;chr17:46687935..46687950,-!p3@HOXB7!0.54!2.50!HOXB7;;chr15:83953397..83953425,-!p1@BNC1!0.53!2.85!BNC1;;chr3:178789522..178789564,-!p2@ZMAT3!0.52!21.76!ZMAT3;;chr12:125002827..125002855,-!p5@NCOR2!0.52!3.57!NCOR2;;chr5:72743793..72743855,-!p4@FOXD1!0.52!2.85!FOXD1;;chr11:65687243..65687276,+!p8@DRAP1!0.50!3.21!DRAP1;;chr19:9732460..9732472,-!p2@ZNF561!0.50!2.14!ZNF561;;chr20:30433396..30433414,-!p1@FOXS1!0.50!2.14!FOXS1;;chr15:67458861..67458879,+!p17@SMAD3!0.50!2.14!SMAD3;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.14!FOXC2;;chrY:2803415..2803468,+!p1@ZFY!0.50!2.14!ZFY;;chr17:3571887..3571918,-!p2@TAX1BP3!0.49!31.03!TAX1BP3;;chr19:56152332..56152347,+!p4@ZNF580!0.49!5.71!ZNF580;;chr11:65686855..65686946,+!p1@DRAP1!0.48!207.23!DRAP1;;chr17:79885537..79885554,-!p2@MAFG!0.48!4.64!MAFG;;chr15:96869255..96869291,+!p6@NR2F2!0.48!4.28!NR2F2;;chr12:66218378..66218401,+!p6@HMGA2!0.48!3.57!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!0.48!2.85!HMGA2;;chr20:50179368..50179392,-!p2@NFATC2!0.48!2.85!NFATC2;;chr17:41623259..41623278,-!p7@ETV4!0.48!2.50!ETV4;;chr1:8934931..8934947,-!p4@ENO1!0.47!8.20!ENO1;;chr2:19558373..19558392,-!p1@OSR1!0.47!6.78!OSR1;;chr2:145275162..145275202,-!p2@ZEB2!0.46!14.98!ZEB2;;chr12:125002861..125002894,-!p7@NCOR2!0.46!3.21!NCOR2;;chr19:45252008..45252024,+!p2@BCL3!0.45!7.85!BCL3;;chr8:106330656..106330684,+!p1@ZFPM2!0.45!6.06!ZFPM2;;chr18:19749517..19749531,+!p3@GATA6!0.45!3.92!GATA6;;chr1:221052700..221052730,+!p5@HLX!0.45!3.21!HLX;;chr11:65687882..65687902,+!p10@DRAP1!0.45!2.85!DRAP1;;chr12:77459306..77459365,-!p1@E2F7!0.44!30.67!E2F7;;chr12:27485823..27485868,+!p2@ARNTL2!0.44!9.63!ARNTL2;;chr12:57504975..57505019,-!p2@STAT6!0.44!9.63!STAT6;;chr17:38498594..38498661,+!p2@RARA!0.44!7.85!RARA;;chr16:29819446..29819471,+!p9@MAZ!0.44!6.78!MAZ;;chr11:65430554..65430579,-!p3@RELA!0.44!5.71!RELA;;chr11:65687222..65687240,+!p7@DRAP1!0.44!2.50!DRAP1;;chr3:39195139..39195150,-!p3@CSRNP1!0.44!2.50!CSRNP1;;chr2:5832508..5832524,+!p1@SOX11!0.44!1.78!SOX11;;chr3:71294304..71294332,-!p35@FOXP1!0.44!1.78!FOXP1;;chr11:46333934..46333963,+!p5@CREB3L1!0.44!1.78!CREB3L1;;chr12:54366949..54366973,+!p3@HOXC11!0.44!1.78!HOXC11;;chr12:54378864..54378884,+!p6@HOXC10!0.44!1.78!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.44!1.78!HOXC9;;chr15:67418177..67418204,+!p9@SMAD3!0.44!1.78!SMAD3;;chr15:67458836..67458859,+!p22@SMAD3!0.44!1.78!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.44!1.78!FOXL1;;chr1:170633058..170633084,+!p5@PRRX1!0.44!1.78!PRRX1;;chr5:139492456..139492489,+!p7@PURA!0.44!1.78!PURA;;chr7:1577952..1577963,+!p8@MAFK!0.44!1.78!MAFK;;chr8:40755333..40755352,-!p1@ZMAT4!0.44!1.78!ZMAT4;;chr3:185826764..185826803,-!p2@ETV5!0.43!8.56!ETV5;;chr5:321810..321877,+!p1@AHRR!0.43!7.13!AHRR;;chr17:41623009..41623053,-!p4@ETV4!0.43!3.21!ETV4;;chr5:174151553..174151610,+!p1@MSX2!0.42!3.21!MSX2;;chr12:124873852..124873881,-!p3@NCOR2!0.41!13.55!NCOR2;;chr6:43139041..43139094,+!p3@SRF!0.41!12.48!SRF;;chr2:231280954..231280965,+!p2@SP100!0.41!3.57!SP100;;chr20:39946400..39946423,-!p3@ZHX3!0.41!3.57!ZHX3;;chr2:101436564..101436647,+!p1@NPAS2!0.40!46.37!NPAS2;;chr3:52001448..52001478,-!p2@PCBP4!0.40!31.39!PCBP4;;chr7:26191809..26191890,+!p1@NFE2L3!0.40!10.70!NFE2L3;;chr3:52001426..52001447,-!p3@PCBP4!0.40!5.71!PCBP4;;chr19:3573282..3573289,+!p5@HMG20B!0.40!2.14!HMG20B;;chr15:76629123..76629151,+!p1@ISL2!0.40!1.78!ISL2;;chr11:65686702..65686715,+!p11@DRAP1!0.40!1.78!DRAP1;;chr4:2263809..2263854,-!p1@MXD4!0.39!85.24!MXD4;;chr12:53614115..53614154,-!p1@RARG!0.39!11.41!RARG;;chr10:94449675..94449694,+!p2@HHEX!0.39!5.35!HHEX;;chr12:96588368..96588394,+!p3@ELK3!0.39!5.35!ELK3;;chr12:66218183..66218209,+!p4@HMGA2!0.39!3.57!HMGA2;;chr3:52001396..52001425,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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520artery%252c%2520donor0.CNhs10839.11212-116A6.hg38.nobarcode.ctss.bed.gz
|id=FF:11212-116A6
|id=FF:11212-116A6
|is_a=EFO:0002091;;FF:0000002;;FF:0000176;;FF:0000210
|is_a=EFO:0002091;;FF:0000176
|is_obsolete=
|library_id=CNhs10839
|library_id_phase_based=2:CNhs10839
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11212
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.TAGCTT.11212
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11212
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.TAGCTT.11212
|name=Smooth Muscle Cells - Umbilical artery, donor0
|name=Smooth Muscle Cells - Umbilical artery, donor0
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs10839,LSID700,release009,COMPLETED
|profile_hcage=CNhs10839,LSID700,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|profile_srnaseq=SRhi10015,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_box=116
|rna_catalog_number=CA252-R10n
|rna_catalog_number=CA252-R10n
Line 55: Line 82:
|rna_tube_id=116A6
|rna_tube_id=116A6
|rna_weight_ug=25
|rna_weight_ug=25
|rnaseq_library_id=SRhi10015.TAGCTT
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.35657563397443e-214!GO:0005737;cytoplasm;8.2056425291031e-207!GO:0043226;organelle;4.93230540458096e-166!GO:0043229;intracellular organelle;1.37739917797873e-165!GO:0043231;intracellular membrane-bound organelle;6.29465545418745e-159!GO:0043227;membrane-bound organelle;8.91008795773472e-159!GO:0044444;cytoplasmic part;5.33948219769717e-150!GO:0044422;organelle part;3.98742343370629e-135!GO:0044446;intracellular organelle part;1.66956406419359e-133!GO:0032991;macromolecular complex;9.67454577411159e-95!GO:0030529;ribonucleoprotein complex;1.01802106316817e-80!GO:0005515;protein binding;1.01802106316817e-80!GO:0044238;primary metabolic process;1.57123748147366e-74!GO:0044237;cellular metabolic process;6.21916349008336e-74!GO:0005739;mitochondrion;1.91220582773183e-68!GO:0043233;organelle lumen;1.91220582773183e-68!GO:0031974;membrane-enclosed lumen;1.91220582773183e-68!GO:0043170;macromolecule metabolic process;7.44400104489655e-66!GO:0003723;RNA binding;2.33769786803825e-59!GO:0044428;nuclear part;1.49051296656369e-58!GO:0019538;protein metabolic process;3.69838984284535e-57!GO:0031090;organelle membrane;1.39081439010417e-56!GO:0005840;ribosome;2.51042755090801e-53!GO:0006412;translation;3.97302296858131e-52!GO:0044260;cellular macromolecule metabolic process;1.48626726101355e-51!GO:0044267;cellular protein metabolic process;5.36569332874904e-51!GO:0043234;protein complex;8.94277058025369e-49!GO:0044429;mitochondrial part;3.4240053466787e-48!GO:0016043;cellular component organization and biogenesis;3.81136082046559e-48!GO:0009058;biosynthetic process;5.31990693495051e-48!GO:0003735;structural constituent of ribosome;1.71496157744851e-47!GO:0015031;protein transport;1.19975364661552e-46!GO:0005634;nucleus;2.36251884862382e-46!GO:0033036;macromolecule localization;8.18178421204222e-46!GO:0044249;cellular biosynthetic process;1.79398084180203e-44!GO:0005829;cytosol;2.84261431201537e-44!GO:0009059;macromolecule biosynthetic process;1.61753445807919e-43!GO:0008104;protein localization;2.94691602232233e-43!GO:0045184;establishment of protein localization;4.44979545906143e-43!GO:0031967;organelle envelope;3.18545614242946e-41!GO:0033279;ribosomal subunit;5.3645831171952e-41!GO:0031975;envelope;7.33124862597256e-41!GO:0006396;RNA processing;7.95070325076136e-38!GO:0031981;nuclear lumen;7.98191702324119e-38!GO:0046907;intracellular transport;9.18577774906067e-37!GO:0005740;mitochondrial envelope;6.32690420070029e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.0064289090288e-31!GO:0031966;mitochondrial membrane;7.21797526965863e-31!GO:0006886;intracellular protein transport;3.54362923085256e-30!GO:0006996;organelle organization and biogenesis;1.62269393062094e-29!GO:0016071;mRNA metabolic process;1.83801464553423e-29!GO:0043283;biopolymer metabolic process;1.90886523132317e-29!GO:0019866;organelle inner membrane;4.67722432527916e-29!GO:0043228;non-membrane-bound organelle;5.85330662782549e-29!GO:0043232;intracellular non-membrane-bound organelle;5.85330662782549e-29!GO:0005743;mitochondrial inner membrane;7.84275478296058e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.41742073348356e-27!GO:0008380;RNA splicing;7.82409433442206e-27!GO:0065003;macromolecular complex assembly;1.21164915382387e-26!GO:0044445;cytosolic part;4.97725257502167e-26!GO:0006397;mRNA processing;1.52535926116169e-25!GO:0010467;gene expression;2.82235778441558e-25!GO:0005783;endoplasmic reticulum;3.03717528530123e-24!GO:0051649;establishment of cellular localization;1.85462889202714e-23!GO:0022607;cellular component assembly;2.01980676122933e-23!GO:0051641;cellular localization;2.19199590457694e-23!GO:0012505;endomembrane system;5.24860550033062e-23!GO:0006119;oxidative phosphorylation;6.34154515145454e-23!GO:0005654;nucleoplasm;1.13830737373128e-22!GO:0006457;protein folding;2.69229897136513e-21!GO:0015934;large ribosomal subunit;2.75848514056436e-21!GO:0044455;mitochondrial membrane part;4.01269781756422e-21!GO:0015935;small ribosomal subunit;1.18752238340854e-20!GO:0016462;pyrophosphatase activity;1.18752238340854e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.21519637012634e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.82405475620472e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.96993270311864e-20!GO:0017111;nucleoside-triphosphatase activity;3.2084362520083e-20!GO:0005681;spliceosome;3.28143683964781e-20!GO:0000166;nucleotide binding;4.21694137349858e-20!GO:0044432;endoplasmic reticulum part;1.00859466667643e-19!GO:0005794;Golgi apparatus;2.26834542908895e-19!GO:0044451;nucleoplasm part;2.95741540346267e-19!GO:0031980;mitochondrial lumen;5.24191791280472e-19!GO:0005759;mitochondrial matrix;5.24191791280472e-19!GO:0005746;mitochondrial respiratory chain;4.91784341562775e-18!GO:0048770;pigment granule;5.87245620025714e-18!GO:0042470;melanosome;5.87245620025714e-18!GO:0016874;ligase activity;9.56889344622331e-18!GO:0000502;proteasome complex (sensu Eukaryota);9.99597511880229e-17!GO:0051186;cofactor metabolic process;2.10366393836507e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.54948472567624e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.98833444600764e-16!GO:0022618;protein-RNA complex assembly;8.32625731639559e-16!GO:0005730;nucleolus;8.61640585816533e-16!GO:0006512;ubiquitin cycle;1.15466649943688e-15!GO:0006259;DNA metabolic process;1.45789649162562e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.10320107871346e-15!GO:0048193;Golgi vesicle transport;2.28329571111496e-15!GO:0043412;biopolymer modification;2.81205586024865e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.12899414884013e-15!GO:0003954;NADH dehydrogenase activity;3.12899414884013e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.12899414884013e-15!GO:0051082;unfolded protein binding;3.48708642956978e-15!GO:0008134;transcription factor binding;3.57178898100392e-15!GO:0016192;vesicle-mediated transport;3.73856860943585e-15!GO:0006605;protein targeting;3.73856860943585e-15!GO:0032553;ribonucleotide binding;6.06121146330596e-15!GO:0032555;purine ribonucleotide binding;6.06121146330596e-15!GO:0044265;cellular macromolecule catabolic process;6.3295288786026e-15!GO:0017076;purine nucleotide binding;7.44510096432811e-15!GO:0008135;translation factor activity, nucleic acid binding;1.21997665650106e-14!GO:0043285;biopolymer catabolic process;1.59842444040389e-14!GO:0009057;macromolecule catabolic process;1.95033847600327e-14!GO:0006464;protein modification process;2.61137471294629e-14!GO:0044248;cellular catabolic process;2.91797655920568e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.37715798463526e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.16890044481091e-14!GO:0005761;mitochondrial ribosome;8.16890044481091e-14!GO:0000313;organellar ribosome;8.16890044481091e-14!GO:0007049;cell cycle;1.0699034238067e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.58147306197092e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.66964358204418e-13!GO:0042773;ATP synthesis coupled electron transport;1.66964358204418e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.93173322272338e-13!GO:0045271;respiratory chain complex I;1.93173322272338e-13!GO:0005747;mitochondrial respiratory chain complex I;1.93173322272338e-13!GO:0005789;endoplasmic reticulum membrane;2.05814560359711e-13!GO:0019941;modification-dependent protein catabolic process;2.40804971197729e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.40804971197729e-13!GO:0044257;cellular protein catabolic process;2.97588329803424e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.68445252168122e-13!GO:0006732;coenzyme metabolic process;4.88478769897991e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.44529657403824e-13!GO:0030163;protein catabolic process;8.96424598289513e-13!GO:0009055;electron carrier activity;2.03497648479643e-12!GO:0012501;programmed cell death;9.17828046849671e-12!GO:0042254;ribosome biogenesis and assembly;1.02824323243425e-11!GO:0009259;ribonucleotide metabolic process;1.17047307067891e-11!GO:0005524;ATP binding;1.74864194977839e-11!GO:0005793;ER-Golgi intermediate compartment;1.80088246407121e-11!GO:0006915;apoptosis;1.81716201811077e-11!GO:0003743;translation initiation factor activity;2.16950631165232e-11!GO:0006163;purine nucleotide metabolic process;2.2394282231549e-11!GO:0043687;post-translational protein modification;2.43114151771916e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.97700123908682e-11!GO:0000375;RNA splicing, via transesterification reactions;2.97700123908682e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.97700123908682e-11!GO:0032559;adenyl ribonucleotide binding;3.76384113580212e-11!GO:0009150;purine ribonucleotide metabolic process;5.50192056276346e-11!GO:0030554;adenyl nucleotide binding;6.00566723974482e-11!GO:0006164;purine nucleotide biosynthetic process;1.18063099962233e-10!GO:0009260;ribonucleotide biosynthetic process;2.0493480999295e-10!GO:0008219;cell death;2.57672065540407e-10!GO:0016265;death;2.57672065540407e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.58284365154158e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.8160599331965e-10!GO:0006413;translational initiation;2.8321679881633e-10!GO:0022402;cell cycle process;3.13209142754187e-10!GO:0003712;transcription cofactor activity;3.31811549902295e-10!GO:0000278;mitotic cell cycle;5.57929405865007e-10!GO:0042623;ATPase activity, coupled;7.47577834909237e-10!GO:0016887;ATPase activity;7.99149823707131e-10!GO:0006913;nucleocytoplasmic transport;8.29712296535198e-10!GO:0008565;protein transporter activity;8.95592342410302e-10!GO:0019787;small conjugating protein ligase activity;1.06759135024757e-09!GO:0008639;small protein conjugating enzyme activity;1.10837306960804e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.15892159851322e-09!GO:0005635;nuclear envelope;1.19233926422094e-09!GO:0048523;negative regulation of cellular process;1.4667269293649e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.64813044719989e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.75763654202106e-09!GO:0051169;nuclear transport;1.76299976066543e-09!GO:0004842;ubiquitin-protein ligase activity;1.95213364263456e-09!GO:0009141;nucleoside triphosphate metabolic process;2.57106268183953e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.06687441232686e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.06687441232686e-09!GO:0003924;GTPase activity;3.16400592127249e-09!GO:0031965;nuclear membrane;3.468383670832e-09!GO:0003676;nucleic acid binding;3.468383670832e-09!GO:0009056;catabolic process;3.65905554540673e-09!GO:0006399;tRNA metabolic process;4.0078127476631e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.01508857370574e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.01508857370574e-09!GO:0044453;nuclear membrane part;5.01508857370574e-09!GO:0009060;aerobic respiration;5.02058529608654e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.27419138896166e-09!GO:0030120;vesicle coat;5.2883797677902e-09!GO:0030662;coated vesicle membrane;5.2883797677902e-09!GO:0016881;acid-amino acid ligase activity;5.50531758817185e-09!GO:0044431;Golgi apparatus part;5.52262039693327e-09!GO:0005788;endoplasmic reticulum lumen;7.33908158116269e-09!GO:0006446;regulation of translational initiation;8.8107629658246e-09!GO:0015986;ATP synthesis coupled proton transport;1.01696384604179e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.01696384604179e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.03197469549732e-08!GO:0048475;coated membrane;1.22632268745073e-08!GO:0030117;membrane coat;1.22632268745073e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.33521731455293e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.33521731455293e-08!GO:0051246;regulation of protein metabolic process;1.34026491300234e-08!GO:0016604;nuclear body;1.35962940075322e-08!GO:0005768;endosome;1.39098928526109e-08!GO:0048519;negative regulation of biological process;1.77720032563057e-08!GO:0051188;cofactor biosynthetic process;1.96543256926659e-08!GO:0045333;cellular respiration;2.09227885794681e-08!GO:0019829;cation-transporting ATPase activity;2.10263597201184e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.31683017296309e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.31683017296309e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.31683017296309e-08!GO:0016491;oxidoreductase activity;3.07465326265205e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.55496511030208e-08!GO:0043067;regulation of programmed cell death;3.63369213847186e-08!GO:0046034;ATP metabolic process;4.40511521848072e-08!GO:0043038;amino acid activation;4.41003048307476e-08!GO:0006418;tRNA aminoacylation for protein translation;4.41003048307476e-08!GO:0043039;tRNA aminoacylation;4.41003048307476e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.59250379863729e-08!GO:0017038;protein import;4.69606025071174e-08!GO:0042981;regulation of apoptosis;4.88726582495773e-08!GO:0043069;negative regulation of programmed cell death;7.21191555688606e-08!GO:0006461;protein complex assembly;7.56295957372479e-08!GO:0009117;nucleotide metabolic process;9.04402961301816e-08!GO:0051726;regulation of cell cycle;9.04829774252293e-08!GO:0000074;regulation of progression through cell cycle;1.0331288952926e-07!GO:0006323;DNA packaging;1.16177833094524e-07!GO:0006364;rRNA processing;1.48364920013549e-07!GO:0006754;ATP biosynthetic process;1.7635997015201e-07!GO:0006753;nucleoside phosphate metabolic process;1.7635997015201e-07!GO:0006916;anti-apoptosis;1.78760788382911e-07!GO:0043066;negative regulation of apoptosis;1.80197985077804e-07!GO:0016072;rRNA metabolic process;2.09907824962184e-07!GO:0005643;nuclear pore;2.30748430576849e-07!GO:0065002;intracellular protein transport across a membrane;2.72034832429017e-07!GO:0006974;response to DNA damage stimulus;2.84849330992253e-07!GO:0016740;transferase activity;3.34280108582034e-07!GO:0051276;chromosome organization and biogenesis;3.37097531342719e-07!GO:0006099;tricarboxylic acid cycle;3.88085237621335e-07!GO:0046356;acetyl-CoA catabolic process;3.88085237621335e-07!GO:0008026;ATP-dependent helicase activity;4.77176394605584e-07!GO:0016070;RNA metabolic process;5.42125237911124e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.64519019160891e-07!GO:0007005;mitochondrion organization and biogenesis;5.71135761455805e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.62840430724926e-07!GO:0005798;Golgi-associated vesicle;7.98769263289737e-07!GO:0016787;hydrolase activity;7.98769263289737e-07!GO:0006084;acetyl-CoA metabolic process;8.72852905807984e-07!GO:0000139;Golgi membrane;8.92299542841685e-07!GO:0044440;endosomal part;9.0407255299684e-07!GO:0010008;endosome membrane;9.0407255299684e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.09310259103043e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.9811159203232e-07!GO:0031988;membrane-bound vesicle;1.0346761985615e-06!GO:0009108;coenzyme biosynthetic process;1.07665843934502e-06!GO:0051187;cofactor catabolic process;1.11824122860309e-06!GO:0005525;GTP binding;1.15726071188448e-06!GO:0006793;phosphorus metabolic process;1.21824399216958e-06!GO:0006796;phosphate metabolic process;1.21824399216958e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.23670036729206e-06!GO:0009109;coenzyme catabolic process;1.25594896450996e-06!GO:0016607;nuclear speck;1.33034137704067e-06!GO:0000087;M phase of mitotic cell cycle;1.71370908566553e-06!GO:0046930;pore complex;1.84798908974768e-06!GO:0008092;cytoskeletal protein binding;1.94566454515074e-06!GO:0007067;mitosis;1.95325456013654e-06!GO:0005770;late endosome;1.96048332011026e-06!GO:0031252;leading edge;2.30585251928258e-06!GO:0003714;transcription corepressor activity;2.32052194833076e-06!GO:0065004;protein-DNA complex assembly;2.57731502789825e-06!GO:0032446;protein modification by small protein conjugation;2.85757552294465e-06!GO:0006752;group transfer coenzyme metabolic process;3.04197960888384e-06!GO:0016567;protein ubiquitination;3.30245385904335e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.30245385904335e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.34039921635113e-06!GO:0006091;generation of precursor metabolites and energy;3.43433861821435e-06!GO:0016310;phosphorylation;3.44451025433825e-06!GO:0004386;helicase activity;3.5323906653369e-06!GO:0045259;proton-transporting ATP synthase complex;3.5323906653369e-06!GO:0005667;transcription factor complex;3.70376500884158e-06!GO:0016853;isomerase activity;4.15296953547341e-06!GO:0045454;cell redox homeostasis;4.56706433323945e-06!GO:0006333;chromatin assembly or disassembly;5.03251364295217e-06!GO:0008361;regulation of cell size;5.72659728980021e-06!GO:0006281;DNA repair;6.00130304685674e-06!GO:0004298;threonine endopeptidase activity;7.10181937404314e-06!GO:0022403;cell cycle phase;7.29805091604149e-06!GO:0016049;cell growth;7.29847157129937e-06!GO:0005773;vacuole;7.86393052953447e-06!GO:0032561;guanyl ribonucleotide binding;8.80188775702406e-06!GO:0019001;guanyl nucleotide binding;8.80188775702406e-06!GO:0005905;coated pit;9.80815914442943e-06!GO:0001558;regulation of cell growth;1.00344255032139e-05!GO:0031982;vesicle;1.03690792732516e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.31256355331868e-05!GO:0031410;cytoplasmic vesicle;1.32398392665502e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.33459437704863e-05!GO:0015630;microtubule cytoskeleton;1.36256350244494e-05!GO:0009719;response to endogenous stimulus;1.62284679546056e-05!GO:0000151;ubiquitin ligase complex;2.00480180929867e-05!GO:0005762;mitochondrial large ribosomal subunit;2.08664623826132e-05!GO:0000315;organellar large ribosomal subunit;2.08664623826132e-05!GO:0000245;spliceosome assembly;2.08664623826132e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.16130505724001e-05!GO:0016568;chromatin modification;2.18964938291302e-05!GO:0006403;RNA localization;2.21381660971383e-05!GO:0051170;nuclear import;2.21381660971383e-05!GO:0050657;nucleic acid transport;2.21381660971383e-05!GO:0051236;establishment of RNA localization;2.21381660971383e-05!GO:0050658;RNA transport;2.21381660971383e-05!GO:0007010;cytoskeleton organization and biogenesis;2.21381660971383e-05!GO:0051789;response to protein stimulus;2.28115908378934e-05!GO:0006986;response to unfolded protein;2.28115908378934e-05!GO:0003697;single-stranded DNA binding;2.33902304283983e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.71323245889176e-05!GO:0030029;actin filament-based process;2.78817060960342e-05!GO:0005694;chromosome;2.85211847971336e-05!GO:0044262;cellular carbohydrate metabolic process;2.91544794826472e-05!GO:0006613;cotranslational protein targeting to membrane;3.03099669115621e-05!GO:0030867;rough endoplasmic reticulum membrane;3.10089313935469e-05!GO:0048522;positive regulation of cellular process;3.31190203963436e-05!GO:0033116;ER-Golgi intermediate compartment membrane;3.53784762708402e-05!GO:0006606;protein import into nucleus;3.59919326894938e-05!GO:0006260;DNA replication;3.7236160321584e-05!GO:0051301;cell division;3.7288013819995e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.743203534416e-05!GO:0019843;rRNA binding;3.86477529520397e-05!GO:0031968;organelle outer membrane;4.09844650067823e-05!GO:0008654;phospholipid biosynthetic process;4.22621518305131e-05!GO:0003713;transcription coactivator activity;4.65243287980791e-05!GO:0044427;chromosomal part;4.65243287980791e-05!GO:0005048;signal sequence binding;4.65328149221023e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.90576840083145e-05!GO:0016779;nucleotidyltransferase activity;5.14004093263354e-05!GO:0030176;integral to endoplasmic reticulum membrane;5.26856899965023e-05!GO:0006366;transcription from RNA polymerase II promoter;5.2724424781757e-05!GO:0019867;outer membrane;5.76436799501538e-05!GO:0006334;nucleosome assembly;6.40766143994002e-05!GO:0016563;transcription activator activity;6.44010392651323e-05!GO:0043623;cellular protein complex assembly;7.4523951511783e-05!GO:0009165;nucleotide biosynthetic process;7.81499474453441e-05!GO:0000785;chromatin;8.19597762994569e-05!GO:0003899;DNA-directed RNA polymerase activity;8.88016618747207e-05!GO:0043566;structure-specific DNA binding;8.96025093391656e-05!GO:0000323;lytic vacuole;9.19458448594987e-05!GO:0005764;lysosome;9.19458448594987e-05!GO:0050794;regulation of cellular process;9.2882244034058e-05!GO:0016859;cis-trans isomerase activity;9.69848265026916e-05!GO:0016564;transcription repressor activity;0.000102341268513607!GO:0031497;chromatin assembly;0.000110344394898647!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000114984430995083!GO:0045786;negative regulation of progression through cell cycle;0.000124225929673547!GO:0005741;mitochondrial outer membrane;0.000128814931161973!GO:0003724;RNA helicase activity;0.000129988543662553!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000145505962291005!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000151111275086777!GO:0030133;transport vesicle;0.000170447940410948!GO:0007243;protein kinase cascade;0.000213948354080574!GO:0005885;Arp2/3 protein complex;0.000228190386315269!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000229964099609947!GO:0015399;primary active transmembrane transporter activity;0.000229964099609947!GO:0043021;ribonucleoprotein binding;0.000282218907663779!GO:0006082;organic acid metabolic process;0.000292139084066264!GO:0006612;protein targeting to membrane;0.0002923991679449!GO:0031324;negative regulation of cellular metabolic process;0.000294451112652458!GO:0006414;translational elongation;0.00031101057198514!GO:0051028;mRNA transport;0.00031295641913584!GO:0000314;organellar small ribosomal subunit;0.000340610161109553!GO:0005763;mitochondrial small ribosomal subunit;0.000340610161109553!GO:0019752;carboxylic acid metabolic process;0.000340610161109553!GO:0016044;membrane organization and biogenesis;0.000347774660900835!GO:0008047;enzyme activator activity;0.000351911470809866!GO:0040008;regulation of growth;0.000351911470809866!GO:0030663;COPI coated vesicle membrane;0.000357479706589131!GO:0030126;COPI vesicle coat;0.000357479706589131!GO:0042802;identical protein binding;0.000370432849731572!GO:0005769;early endosome;0.000441335134121391!GO:0019899;enzyme binding;0.000443590339507031!GO:0008250;oligosaccharyl transferase complex;0.000487393744435859!GO:0051427;hormone receptor binding;0.000498883639707463!GO:0046474;glycerophospholipid biosynthetic process;0.000500889874996839!GO:0000279;M phase;0.000505814533522832!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000542754333429569!GO:0030658;transport vesicle membrane;0.000545031081879146!GO:0015631;tubulin binding;0.000567149972047225!GO:0051329;interphase of mitotic cell cycle;0.00057908580162367!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00058244156981619!GO:0030137;COPI-coated vesicle;0.00060374795602426!GO:0043284;biopolymer biosynthetic process;0.000623837337398746!GO:0048471;perinuclear region of cytoplasm;0.000629215478551073!GO:0004576;oligosaccharyl transferase activity;0.000686261844348369!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000740291339472451!GO:0065009;regulation of a molecular function;0.000797344986621216!GO:0030118;clathrin coat;0.000806890874077479!GO:0003779;actin binding;0.000806890874077479!GO:0051168;nuclear export;0.000815786132100652!GO:0006626;protein targeting to mitochondrion;0.000842363103492643!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000842363103492643!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000856450915279478!GO:0006891;intra-Golgi vesicle-mediated transport;0.000890288366191097!GO:0009892;negative regulation of metabolic process;0.000890288366191097!GO:0045792;negative regulation of cell size;0.000890288366191097!GO:0030308;negative regulation of cell growth;0.000892350721067128!GO:0030880;RNA polymerase complex;0.000901165345648919!GO:0051920;peroxiredoxin activity;0.000903193891975295!GO:0007264;small GTPase mediated signal transduction;0.000909780831275597!GO:0008632;apoptotic program;0.00091919557793651!GO:0031072;heat shock protein binding;0.000924941056815269!GO:0035257;nuclear hormone receptor binding;0.000967347398963425!GO:0043681;protein import into mitochondrion;0.00108540589874217!GO:0005813;centrosome;0.00113488007620848!GO:0046489;phosphoinositide biosynthetic process;0.00121512166263029!GO:0030660;Golgi-associated vesicle membrane;0.00129506061048807!GO:0048487;beta-tubulin binding;0.00135870237759095!GO:0018196;peptidyl-asparagine modification;0.00137686622908685!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00137686622908685!GO:0043492;ATPase activity, coupled to movement of substances;0.0014782535733735!GO:0022890;inorganic cation transmembrane transporter activity;0.00152781162964374!GO:0030132;clathrin coat of coated pit;0.00153024012089359!GO:0006839;mitochondrial transport;0.00156028678804969!GO:0030659;cytoplasmic vesicle membrane;0.00160803676715741!GO:0007006;mitochondrial membrane organization and biogenesis;0.00162067154658259!GO:0015992;proton transport;0.00166593777195402!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00172010240374087!GO:0008186;RNA-dependent ATPase activity;0.00182009465043146!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00183542110820854!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00183542110820854!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00183542110820854!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00183987813099186!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00184476271571285!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00194936029042147!GO:0031301;integral to organelle membrane;0.00203480660929561!GO:0051325;interphase;0.00207457004534892!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00210355632984486!GO:0000428;DNA-directed RNA polymerase complex;0.00210355632984486!GO:0006818;hydrogen transport;0.00210823406145707!GO:0005791;rough endoplasmic reticulum;0.00218649477427742!GO:0005815;microtubule organizing center;0.00230294992951442!GO:0006520;amino acid metabolic process;0.00232227053117517!GO:0030134;ER to Golgi transport vesicle;0.00250012287825032!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00251731583538081!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00255174057869158!GO:0016197;endosome transport;0.0026210720791954!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00267464898322804!GO:0005819;spindle;0.00275902698293998!GO:0044433;cytoplasmic vesicle part;0.00288288571433708!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00301734246442483!GO:0015002;heme-copper terminal oxidase activity;0.00301734246442483!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00301734246442483!GO:0004129;cytochrome-c oxidase activity;0.00301734246442483!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00304291886029061!GO:0046467;membrane lipid biosynthetic process;0.00352995164415922!GO:0050789;regulation of biological process;0.00354043846126871!GO:0000059;protein import into nucleus, docking;0.00359838161734508!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0036289916857484!GO:0030127;COPII vesicle coat;0.00364565499083771!GO:0012507;ER to Golgi transport vesicle membrane;0.00364565499083771!GO:0031902;late endosome membrane;0.00385738236397597!GO:0048500;signal recognition particle;0.00390827561446967!GO:0048518;positive regulation of biological process;0.00417319043169124!GO:0004004;ATP-dependent RNA helicase activity;0.00417319043169124!GO:0006497;protein amino acid lipidation;0.00417319043169124!GO:0006383;transcription from RNA polymerase III promoter;0.00425548634419512!GO:0016363;nuclear matrix;0.00432811547823336!GO:0045926;negative regulation of growth;0.00436351483836885!GO:0008139;nuclear localization sequence binding;0.00442747239659024!GO:0006007;glucose catabolic process;0.00447341474413703!GO:0046519;sphingoid metabolic process;0.00447828291497808!GO:0017166;vinculin binding;0.00452605988008917!GO:0003746;translation elongation factor activity;0.00461021540628529!GO:0006807;nitrogen compound metabolic process;0.00469714978228169!GO:0005096;GTPase activator activity;0.00480950329622589!GO:0030027;lamellipodium;0.00484001219591653!GO:0030119;AP-type membrane coat adaptor complex;0.00506064010678396!GO:0046483;heterocycle metabolic process;0.0050708847756717!GO:0004177;aminopeptidase activity;0.0050708847756717!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00513289944786614!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00513289944786614!GO:0008243;plasminogen activator activity;0.00514066750098643!GO:0051087;chaperone binding;0.00541625929052152!GO:0048468;cell development;0.00547996943476898!GO:0006595;polyamine metabolic process;0.00551325849433082!GO:0045045;secretory pathway;0.00564255912782722!GO:0030521;androgen receptor signaling pathway;0.00575018434891364!GO:0012506;vesicle membrane;0.00578980860693348!GO:0009967;positive regulation of signal transduction;0.00587035760674231!GO:0008610;lipid biosynthetic process;0.00595201215813526!GO:0030125;clathrin vesicle coat;0.00595201215813526!GO:0030665;clathrin coated vesicle membrane;0.00595201215813526!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00599185662865041!GO:0005874;microtubule;0.00606836492553974!GO:0044452;nucleolar part;0.00621780102411291!GO:0008180;signalosome;0.00632356144465948!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00650678681060226!GO:0035258;steroid hormone receptor binding;0.00663818792482099!GO:0003729;mRNA binding;0.00674764011740613!GO:0000049;tRNA binding;0.00711379955179772!GO:0008033;tRNA processing;0.007164233909389!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00724718967738358!GO:0031543;peptidyl-proline dioxygenase activity;0.0074786105945384!GO:0007050;cell cycle arrest;0.00755231585491582!GO:0006509;membrane protein ectodomain proteolysis;0.00780291608877541!GO:0033619;membrane protein proteolysis;0.00780291608877541!GO:0016126;sterol biosynthetic process;0.00787995351478382!GO:0005684;U2-dependent spliceosome;0.00789573923376368!GO:0003711;transcription elongation regulator activity;0.00798014312238937!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0080900950451584!GO:0005869;dynactin complex;0.00820317429164244!GO:0006672;ceramide metabolic process;0.00832169779088383!GO:0045941;positive regulation of transcription;0.00838209591204173!GO:0030131;clathrin adaptor complex;0.00840629312744566!GO:0005862;muscle thin filament tropomyosin;0.00863734101799346!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00954144608292045!GO:0045047;protein targeting to ER;0.00954144608292045!GO:0000786;nucleosome;0.00960591330462649!GO:0007040;lysosome organization and biogenesis;0.0099787708122518!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0101434311268587!GO:0051252;regulation of RNA metabolic process;0.0105111544227894!GO:0045893;positive regulation of transcription, DNA-dependent;0.0107610707143554!GO:0008312;7S RNA binding;0.0109018656747443!GO:0031418;L-ascorbic acid binding;0.0109788065869673!GO:0009308;amine metabolic process;0.0112050416720099!GO:0016272;prefoldin complex;0.0112050416720099!GO:0050790;regulation of catalytic activity;0.0116176251306821!GO:0007034;vacuolar transport;0.0116935595409828!GO:0051287;NAD binding;0.0117747515264302!GO:0001726;ruffle;0.0118398399522822!GO:0007033;vacuole organization and biogenesis;0.011875655144262!GO:0006118;electron transport;0.011875655144262!GO:0006289;nucleotide-excision repair;0.0121819211114471!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0121819211114471!GO:0019798;procollagen-proline dioxygenase activity;0.0124138041429907!GO:0050662;coenzyme binding;0.0125184196995343!GO:0045936;negative regulation of phosphate metabolic process;0.0128805866392277!GO:0018193;peptidyl-amino acid modification;0.0130007687451224!GO:0005774;vacuolar membrane;0.013048212596677!GO:0033673;negative regulation of kinase activity;0.0132089311497819!GO:0006469;negative regulation of protein kinase activity;0.0132089311497819!GO:0019318;hexose metabolic process;0.0132089311497819!GO:0000082;G1/S transition of mitotic cell cycle;0.0132392534801741!GO:0005832;chaperonin-containing T-complex;0.0133685949418915!GO:0006650;glycerophospholipid metabolic process;0.0137098355750141!GO:0042158;lipoprotein biosynthetic process;0.0139469814923711!GO:0030041;actin filament polymerization;0.0139961620227942!GO:0006417;regulation of translation;0.0144603528395726!GO:0051540;metal cluster binding;0.014514117101554!GO:0051536;iron-sulfur cluster binding;0.014514117101554!GO:0050811;GABA receptor binding;0.0146872268980249!GO:0043022;ribosome binding;0.0147689763296363!GO:0043488;regulation of mRNA stability;0.0147801748753162!GO:0043487;regulation of RNA stability;0.0147801748753162!GO:0006401;RNA catabolic process;0.014894739835409!GO:0006740;NADPH regeneration;0.0149938781353833!GO:0006098;pentose-phosphate shunt;0.0149938781353833!GO:0006506;GPI anchor biosynthetic process;0.0155211092418707!GO:0003684;damaged DNA binding;0.0156624339686006!GO:0005996;monosaccharide metabolic process;0.0156965546732974!GO:0006979;response to oxidative stress;0.0157693526264874!GO:0006354;RNA elongation;0.0158378667099514!GO:0006984;ER-nuclear signaling pathway;0.0167658068283906!GO:0048144;fibroblast proliferation;0.0168684637282865!GO:0048145;regulation of fibroblast proliferation;0.0168684637282865!GO:0016481;negative regulation of transcription;0.0170785916919329!GO:0051348;negative regulation of transferase activity;0.0175435600441414!GO:0007021;tubulin folding;0.0175774514560131!GO:0051128;regulation of cellular component organization and biogenesis;0.0182274140065907!GO:0006611;protein export from nucleus;0.0185955400824117!GO:0006352;transcription initiation;0.0186625868886517!GO:0031529;ruffle organization and biogenesis;0.0190019555396523!GO:0008154;actin polymerization and/or depolymerization;0.0191590983119488!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0192185244854139!GO:0006405;RNA export from nucleus;0.0195662895814399!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0195662895814399!GO:0006778;porphyrin metabolic process;0.0197892415676655!GO:0033013;tetrapyrrole metabolic process;0.0197892415676655!GO:0006096;glycolysis;0.02040729202967!GO:0000209;protein polyubiquitination;0.0204954360796075!GO:0000030;mannosyltransferase activity;0.0206578857512399!GO:0046426;negative regulation of JAK-STAT cascade;0.0212110372944282!GO:0042168;heme metabolic process;0.0214640611019754!GO:0031970;organelle envelope lumen;0.0215345166964214!GO:0007265;Ras protein signal transduction;0.0215345166964214!GO:0006897;endocytosis;0.0216547023226552!GO:0010324;membrane invagination;0.0216547023226552!GO:0006402;mRNA catabolic process;0.02194314681901!GO:0004674;protein serine/threonine kinase activity;0.0220712608557113!GO:0006892;post-Golgi vesicle-mediated transport;0.0222248138083124!GO:0006695;cholesterol biosynthetic process;0.0222248138083124!GO:0006950;response to stress;0.0222255630427742!GO:0008538;proteasome activator activity;0.0223249369204062!GO:0003756;protein disulfide isomerase activity;0.0227445994512821!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0227445994512821!GO:0051539;4 iron, 4 sulfur cluster binding;0.0232743535742837!GO:0006505;GPI anchor metabolic process;0.0235231011917964!GO:0000339;RNA cap binding;0.0236122455672353!GO:0030433;ER-associated protein catabolic process;0.0237090627166627!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0237090627166627!GO:0030518;steroid hormone receptor signaling pathway;0.024628520662485!GO:0035035;histone acetyltransferase binding;0.0252471095297149!GO:0030384;phosphoinositide metabolic process;0.0255258376970875!GO:0009889;regulation of biosynthetic process;0.0258616464184499!GO:0008022;protein C-terminus binding;0.0262863987320156!GO:0031300;intrinsic to organelle membrane;0.0265014611018998!GO:0009112;nucleobase metabolic process;0.0269833107432972!GO:0016301;kinase activity;0.0270120717125099!GO:0007242;intracellular signaling cascade;0.0270120717125099!GO:0005100;Rho GTPase activator activity;0.0270904966876688!GO:0044437;vacuolar part;0.0272578010520468!GO:0005975;carbohydrate metabolic process;0.0273548516479704!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0273548516479704!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0274196385969352!GO:0008637;apoptotic mitochondrial changes;0.0274902627259589!GO:0006519;amino acid and derivative metabolic process;0.0275431913653151!GO:0031625;ubiquitin protein ligase binding;0.0281091644012945!GO:0005669;transcription factor TFIID complex;0.0281469728371254!GO:0042326;negative regulation of phosphorylation;0.0282849867729176!GO:0006378;mRNA polyadenylation;0.0284253576694565!GO:0048146;positive regulation of fibroblast proliferation;0.0292500717433805!GO:0008017;microtubule binding;0.0292500717433805!GO:0030145;manganese ion binding;0.0296623811263015!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0299653065299932!GO:0005092;GDP-dissociation inhibitor activity;0.0299653065299932!GO:0030032;lamellipodium biogenesis;0.0299653065299932!GO:0031124;mRNA 3'-end processing;0.0300199438142939!GO:0005758;mitochondrial intermembrane space;0.0300338873584531!GO:0050681;androgen receptor binding;0.0305265582209378!GO:0000075;cell cycle checkpoint;0.0316962097982696!GO:0005938;cell cortex;0.0317335965388455!GO:0016408;C-acyltransferase activity;0.031737471608421!GO:0007030;Golgi organization and biogenesis;0.0317604609705218!GO:0009116;nucleoside metabolic process;0.0319959021032594!GO:0000118;histone deacetylase complex;0.032405239291818!GO:0030833;regulation of actin filament polymerization;0.0325881686797852!GO:0032940;secretion by cell;0.032983588731865!GO:0006779;porphyrin biosynthetic process;0.0333246192577499!GO:0033014;tetrapyrrole biosynthetic process;0.0333246192577499!GO:0006376;mRNA splice site selection;0.0333485572262464!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0333485572262464!GO:0005099;Ras GTPase activator activity;0.0336530883676271!GO:0031326;regulation of cellular biosynthetic process;0.0340682449857698!GO:0046365;monosaccharide catabolic process;0.0342686433199102!GO:0006783;heme biosynthetic process;0.0344951660172312!GO:0031901;early endosome membrane;0.0346333039322019!GO:0006458;'de novo' protein folding;0.0350051660718912!GO:0051084;'de novo' posttranslational protein folding;0.0350051660718912!GO:0009303;rRNA transcription;0.0351976124975357!GO:0016251;general RNA polymerase II transcription factor activity;0.0358641530452955!GO:0016860;intramolecular oxidoreductase activity;0.0359946704101163!GO:0043065;positive regulation of apoptosis;0.0360706800527099!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0363224281669152!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0363224281669152!GO:0019206;nucleoside kinase activity;0.0365835575762657!GO:0007088;regulation of mitosis;0.03672156000297!GO:0048037;cofactor binding;0.0381037524463566!GO:0000287;magnesium ion binding;0.0382302523879795!GO:0032984;macromolecular complex disassembly;0.0384644066564025!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0386121294541237!GO:0005765;lysosomal membrane;0.0387743103749399!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.038961919964236!GO:0033043;regulation of organelle organization and biogenesis;0.038961919964236!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0392856925660518!GO:0006261;DNA-dependent DNA replication;0.0398335397673819!GO:0005637;nuclear inner membrane;0.0407771819706852!GO:0043068;positive regulation of programmed cell death;0.0409008370673506!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0410769357638088!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0413404020824798!GO:0000096;sulfur amino acid metabolic process;0.0414037686394694!GO:0006518;peptide metabolic process;0.0419835929774219!GO:0001666;response to hypoxia;0.0431854881027659!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0431854881027659!GO:0030911;TPR domain binding;0.0434150304194254!GO:0007041;lysosomal transport;0.0442663148627277!GO:0045334;clathrin-coated endocytic vesicle;0.0451324616867727!GO:0006338;chromatin remodeling;0.0458748657637195!GO:0005657;replication fork;0.0465744775570269!GO:0008283;cell proliferation;0.0467185116100409!GO:0003690;double-stranded DNA binding;0.0471740687745947!GO:0032906;transforming growth factor-beta2 production;0.0471740687745947!GO:0032909;regulation of transforming growth factor-beta2 production;0.0471740687745947!GO:0008652;amino acid biosynthetic process;0.0471740687745947!GO:0051098;regulation of binding;0.0474838370794196!GO:0006635;fatty acid beta-oxidation;0.0485092209913407!GO:0043433;negative regulation of transcription factor activity;0.048529655152453!GO:0043189;H4/H2A histone acetyltransferase complex;0.0488152064785154!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0488332462822187!GO:0019320;hexose catabolic process;0.0491013803466084!GO:0031371;ubiquitin conjugating enzyme complex;0.049132373026956!GO:0051235;maintenance of localization;0.049132373026956!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.049132373026956
|sample_id=11212
|sample_id=11212
|sample_note=machine failed, remainder reloaded, low amount
|sample_note=machine failed, remainder reloaded, low amount
Line 75: Line 105:
|sample_tissue=umbilical artery
|sample_tissue=umbilical artery
|top_motifs=SRF:1.93854032219;GTF2A1,2:1.60852698921;HOX{A5,B5}:1.49998685187;PPARG:1.38399274778;TP53:1.20298452118;PAX8:1.18087853215;HIF1A:1.13309338288;NFE2L1:1.09936347606;CRX:1.05774264025;STAT5{A,B}:0.999682321495;TBX4,5:0.977400053823;ZNF148:0.904507243665;EN1,2:0.902529887525;GLI1..3:0.897989584202;HMGA1,2:0.872441888713;EBF1:0.866418035056;IKZF1:0.828642565748;HAND1,2:0.825588123557;ATF6:0.818399234007;TFAP2{A,C}:0.814497770909;TEAD1:0.809524196462;HES1:0.805478371644;MAFB:0.784568100943;GCM1,2:0.763846984663;PAX1,9:0.760141565499;POU1F1:0.739187226648;TFCP2:0.674140578206;TLX1..3_NFIC{dimer}:0.63086277881;ZNF238:0.624289628419;SOX17:0.618145055579;TBP:0.615296083681;HSF1,2:0.615091744487;POU3F1..4:0.595651827443;ADNP_IRX_SIX_ZHX:0.587307638101;TFAP4:0.571990483098;HMX1:0.568219137073;ALX4:0.553473659405;NR3C1:0.551023413042;NFE2L2:0.548326721086;NFATC1..3:0.545597831042;ONECUT1,2:0.54559245191;ZBTB6:0.539557100981;FOSL2:0.517443167742;NKX3-2:0.498825303736;NR5A1,2:0.482406404079;MYBL2:0.480138968557;KLF4:0.459381134806;BACH2:0.448841284904;GFI1B:0.448267667143;FOXL1:0.446716936241;XCPE1{core}:0.437259700972;UFEwm:0.404599081689;AR:0.361223026069;bHLH_family:0.359589046924;JUN:0.355440479737;ZIC1..3:0.350800452314;ESR1:0.342372324773;SOX{8,9,10}:0.337292083411;NKX2-2,8:0.330974121217;HLF:0.325306146384;FOS_FOS{B,L1}_JUN{B,D}:0.319308261725;FOX{I1,J2}:0.290982397487;TAL1_TCF{3,4,12}:0.285066389308;MEF2{A,B,C,D}:0.276220622254;RXR{A,B,G}:0.275176163726;REST:0.266613005523;GATA6:0.258560287425;ZNF423:0.243481388164;LEF1_TCF7_TCF7L1,2:0.220728161397;ZNF384:0.220201271268;LHX3,4:0.21721083053;GZF1:0.211979392615;SMAD1..7,9:0.200544749774;POU6F1:0.199492218815;YY1:0.198463494892;NANOG{mouse}:0.18516369117;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.183452438356;TFAP2B:0.178165046124;RXRA_VDR{dimer}:0.172492950284;NFE2:0.150570940327;SOX2:0.124167547657;XBP1:0.117344096211;NR6A1:0.115468612813;EVI1:0.114224692665;PBX1:0.106008857449;HBP1_HMGB_SSRP1_UBTF:0.10477203842;ELK1,4_GABP{A,B1}:0.104737126991;GTF2I:0.0906649228281;NANOG:0.0830438057713;LMO2:0.0741231489732;MYOD1:0.0651548863146;NFKB1_REL_RELA:0.0580342189108;POU2F1..3:0.0484971086451;HNF1A:0.0447327861234;ALX1:0.0350685904103;NHLH1,2:0.0328265019641;MTE{core}:0.0240112495059;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00518669387384;PAX2:-0.0073656959996;CDC5L:-0.0221491327253;HIC1:-0.0248362573395;ETS1,2:-0.0584428213046;ZFP161:-0.0648934265973;PRDM1:-0.0668663734111;NFIX:-0.068313752467;DBP:-0.0715682095767;TEF:-0.0788453438839;FOXA2:-0.0974121104444;PATZ1:-0.149155506301;RUNX1..3:-0.156092747923;TFDP1:-0.156489197982;MAZ:-0.169577160482;DMAP1_NCOR{1,2}_SMARC:-0.177157594917;NFIL3:-0.19636989589;NKX2-3_NKX2-5:-0.204617508786;ELF1,2,4:-0.216789199235;ZNF143:-0.227841306578;MZF1:-0.239894209474;HOXA9_MEIS1:-0.246652594468;AIRE:-0.25164130803;GFI1:-0.255378024483;SPZ1:-0.258533271435;CEBPA,B_DDIT3:-0.273712441588;FOX{F1,F2,J1}:-0.28011128433;ARID5B:-0.281238821467;PAX5:-0.28201636563;MYB:-0.283726458345;STAT2,4,6:-0.286120279732;ATF2:-0.292335075235;AHR_ARNT_ARNT2:-0.301028901733;RFX1:-0.306874164965;NRF1:-0.322450330019;ATF4:-0.322727396877;TOPORS:-0.326869144161;TGIF1:-0.333961463805;ESRRA:-0.358105477882;GATA4:-0.358632684451;NKX3-1:-0.37202255643;VSX1,2:-0.395054122375;SP1:-0.403489037347;NR1H4:-0.429793474258;OCT4_SOX2{dimer}:-0.441473510126;SPI1:-0.442906172394;SPIB:-0.443426829686;PITX1..3:-0.448505721111;PAX3,7:-0.448742213753;POU5F1:-0.450553145673;PRRX1,2:-0.455571616779;HOX{A6,A7,B6,B7}:-0.455707435494;EGR1..3:-0.461439490151;ZEB1:-0.46995017518;MED-1{core}:-0.471678399924;SNAI1..3:-0.477126648154;HNF4A_NR2F1,2:-0.477811649072;EP300:-0.484222768374;RREB1:-0.485181536637;FOX{D1,D2}:-0.489396027909;FOXM1:-0.49077733456;T:-0.505881437205;HOX{A4,D4}:-0.506922872991;PAX6:-0.59386563634;MTF1:-0.603895224035;MYFfamily:-0.609027320379;RORA:-0.613993303952;CUX2:-0.619749717514;CREB1:-0.636351006189;RFX2..5_RFXANK_RFXAP:-0.637119725375;TLX2:-0.654962188173;NFY{A,B,C}:-0.655453118637;IKZF2:-0.755593994436;E2F1..5:-0.761667507766;SREBF1,2:-0.779852854813;IRF1,2:-0.783930841194;ATF5_CREB3:-0.795137434073;FOXQ1:-0.83039320793;IRF7:-0.858547665372;NKX2-1,4:-0.86464602316;SOX5:-0.943893877504;PDX1:-0.969737847589;FOXD3:-1.00636937208;FOXN1:-1.02356328789;FOXP3:-1.0406487741;CDX1,2,4:-1.06803643322;ZBTB16:-1.09086714162;FOXO1,3,4:-1.13446184156;BPTF:-1.15584672793;PAX4:-1.16137663162;NKX6-1,2:-1.28762191196;FOXP1:-1.29062508861;BREu{core}:-1.31589833861;STAT1,3:-1.37931633909;RBPJ:-1.98286879955
|top_motifs=SRF:1.93854032219;GTF2A1,2:1.60852698921;HOX{A5,B5}:1.49998685187;PPARG:1.38399274778;TP53:1.20298452118;PAX8:1.18087853215;HIF1A:1.13309338288;NFE2L1:1.09936347606;CRX:1.05774264025;STAT5{A,B}:0.999682321495;TBX4,5:0.977400053823;ZNF148:0.904507243665;EN1,2:0.902529887525;GLI1..3:0.897989584202;HMGA1,2:0.872441888713;EBF1:0.866418035056;IKZF1:0.828642565748;HAND1,2:0.825588123557;ATF6:0.818399234007;TFAP2{A,C}:0.814497770909;TEAD1:0.809524196462;HES1:0.805478371644;MAFB:0.784568100943;GCM1,2:0.763846984663;PAX1,9:0.760141565499;POU1F1:0.739187226648;TFCP2:0.674140578206;TLX1..3_NFIC{dimer}:0.63086277881;ZNF238:0.624289628419;SOX17:0.618145055579;TBP:0.615296083681;HSF1,2:0.615091744487;POU3F1..4:0.595651827443;ADNP_IRX_SIX_ZHX:0.587307638101;TFAP4:0.571990483098;HMX1:0.568219137073;ALX4:0.553473659405;NR3C1:0.551023413042;NFE2L2:0.548326721086;NFATC1..3:0.545597831042;ONECUT1,2:0.54559245191;ZBTB6:0.539557100981;FOSL2:0.517443167742;NKX3-2:0.498825303736;NR5A1,2:0.482406404079;MYBL2:0.480138968557;KLF4:0.459381134806;BACH2:0.448841284904;GFI1B:0.448267667143;FOXL1:0.446716936241;XCPE1{core}:0.437259700972;UFEwm:0.404599081689;AR:0.361223026069;bHLH_family:0.359589046924;JUN:0.355440479737;ZIC1..3:0.350800452314;ESR1:0.342372324773;SOX{8,9,10}:0.337292083411;NKX2-2,8:0.330974121217;HLF:0.325306146384;FOS_FOS{B,L1}_JUN{B,D}:0.319308261725;FOX{I1,J2}:0.290982397487;TAL1_TCF{3,4,12}:0.285066389308;MEF2{A,B,C,D}:0.276220622254;RXR{A,B,G}:0.275176163726;REST:0.266613005523;GATA6:0.258560287425;ZNF423:0.243481388164;LEF1_TCF7_TCF7L1,2:0.220728161397;ZNF384:0.220201271268;LHX3,4:0.21721083053;GZF1:0.211979392615;SMAD1..7,9:0.200544749774;POU6F1:0.199492218815;YY1:0.198463494892;NANOG{mouse}:0.18516369117;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.183452438356;TFAP2B:0.178165046124;RXRA_VDR{dimer}:0.172492950284;NFE2:0.150570940327;SOX2:0.124167547657;XBP1:0.117344096211;NR6A1:0.115468612813;EVI1:0.114224692665;PBX1:0.106008857449;HBP1_HMGB_SSRP1_UBTF:0.10477203842;ELK1,4_GABP{A,B1}:0.104737126991;GTF2I:0.0906649228281;NANOG:0.0830438057713;LMO2:0.0741231489732;MYOD1:0.0651548863146;NFKB1_REL_RELA:0.0580342189108;POU2F1..3:0.0484971086451;HNF1A:0.0447327861234;ALX1:0.0350685904103;NHLH1,2:0.0328265019641;MTE{core}:0.0240112495059;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.00518669387384;PAX2:-0.0073656959996;CDC5L:-0.0221491327253;HIC1:-0.0248362573395;ETS1,2:-0.0584428213046;ZFP161:-0.0648934265973;PRDM1:-0.0668663734111;NFIX:-0.068313752467;DBP:-0.0715682095767;TEF:-0.0788453438839;FOXA2:-0.0974121104444;PATZ1:-0.149155506301;RUNX1..3:-0.156092747923;TFDP1:-0.156489197982;MAZ:-0.169577160482;DMAP1_NCOR{1,2}_SMARC:-0.177157594917;NFIL3:-0.19636989589;NKX2-3_NKX2-5:-0.204617508786;ELF1,2,4:-0.216789199235;ZNF143:-0.227841306578;MZF1:-0.239894209474;HOXA9_MEIS1:-0.246652594468;AIRE:-0.25164130803;GFI1:-0.255378024483;SPZ1:-0.258533271435;CEBPA,B_DDIT3:-0.273712441588;FOX{F1,F2,J1}:-0.28011128433;ARID5B:-0.281238821467;PAX5:-0.28201636563;MYB:-0.283726458345;STAT2,4,6:-0.286120279732;ATF2:-0.292335075235;AHR_ARNT_ARNT2:-0.301028901733;RFX1:-0.306874164965;NRF1:-0.322450330019;ATF4:-0.322727396877;TOPORS:-0.326869144161;TGIF1:-0.333961463805;ESRRA:-0.358105477882;GATA4:-0.358632684451;NKX3-1:-0.37202255643;VSX1,2:-0.395054122375;SP1:-0.403489037347;NR1H4:-0.429793474258;OCT4_SOX2{dimer}:-0.441473510126;SPI1:-0.442906172394;SPIB:-0.443426829686;PITX1..3:-0.448505721111;PAX3,7:-0.448742213753;POU5F1:-0.450553145673;PRRX1,2:-0.455571616779;HOX{A6,A7,B6,B7}:-0.455707435494;EGR1..3:-0.461439490151;ZEB1:-0.46995017518;MED-1{core}:-0.471678399924;SNAI1..3:-0.477126648154;HNF4A_NR2F1,2:-0.477811649072;EP300:-0.484222768374;RREB1:-0.485181536637;FOX{D1,D2}:-0.489396027909;FOXM1:-0.49077733456;T:-0.505881437205;HOX{A4,D4}:-0.506922872991;PAX6:-0.59386563634;MTF1:-0.603895224035;MYFfamily:-0.609027320379;RORA:-0.613993303952;CUX2:-0.619749717514;CREB1:-0.636351006189;RFX2..5_RFXANK_RFXAP:-0.637119725375;TLX2:-0.654962188173;NFY{A,B,C}:-0.655453118637;IKZF2:-0.755593994436;E2F1..5:-0.761667507766;SREBF1,2:-0.779852854813;IRF1,2:-0.783930841194;ATF5_CREB3:-0.795137434073;FOXQ1:-0.83039320793;IRF7:-0.858547665372;NKX2-1,4:-0.86464602316;SOX5:-0.943893877504;PDX1:-0.969737847589;FOXD3:-1.00636937208;FOXN1:-1.02356328789;FOXP3:-1.0406487741;CDX1,2,4:-1.06803643322;ZBTB16:-1.09086714162;FOXO1,3,4:-1.13446184156;BPTF:-1.15584672793;PAX4:-1.16137663162;NKX6-1,2:-1.28762191196;FOXP1:-1.29062508861;BREu{core}:-1.31589833861;STAT1,3:-1.37931633909;RBPJ:-1.98286879955
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11212-116A6;search_select_hide=table117:FF:11212-116A6
}}
}}

Latest revision as of 16:24, 3 June 2020

Name:Smooth Muscle Cells - Umbilical artery, donor0
Species:Human (Homo sapiens)
Library ID:CNhs10839
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical artery
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberCA252-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004880
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10839 CAGE DRX008513 DRR009385
Accession ID Hg19

Library idBAMCTSS
CNhs10839 DRZ000810 DRZ002195
Accession ID Hg38

Library idBAMCTSS
CNhs10839 DRZ012160 DRZ013545
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004880
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.TAGCTT sRNA-Seq DRX037253 DRR041619
Accession ID Hg19

Library idBAMCTSS
SRhi10015.TAGCTT DRZ007261


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.166
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.213
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.497
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-8.507621e-4
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.371
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.285
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.132
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.262
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0508
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.132
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.109
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0892
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.132
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.132
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.445
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.91
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.385
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.445
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10839

Jaspar motifP-value
MA0002.20.136
MA0003.10.301
MA0004.10.793
MA0006.10.178
MA0007.10.161
MA0009.10.497
MA0014.10.8
MA0017.10.362
MA0018.20.00665
MA0019.10.307
MA0024.14.3323e-7
MA0025.10.651
MA0027.10.689
MA0028.10.839
MA0029.10.0928
MA0030.10.744
MA0031.10.102
MA0035.20.182
MA0038.10.195
MA0039.20.563
MA0040.10.462
MA0041.10.327
MA0042.10.573
MA0043.10.0592
MA0046.10.725
MA0047.20.692
MA0048.10.187
MA0050.12.65088e-8
MA0051.10.00997
MA0052.10.437
MA0055.10.417
MA0057.10.334
MA0058.10.504
MA0059.10.196
MA0060.10.00814
MA0061.10.305
MA0062.20.0869
MA0065.20.166
MA0066.10.169
MA0067.10.0424
MA0068.10.293
MA0069.10.64
MA0070.10.647
MA0071.10.7
MA0072.10.251
MA0073.10.507
MA0074.10.11
MA0076.10.364
MA0077.10.122
MA0078.10.175
MA0079.20.809
MA0080.20.00233
MA0081.10.192
MA0083.16.0777e-9
MA0084.10.593
MA0087.10.715
MA0088.10.537
MA0090.10.00109
MA0091.10.27
MA0092.10.0862
MA0093.10.727
MA0099.25.26292e-13
MA0100.10.218
MA0101.10.467
MA0102.20.0423
MA0103.10.665
MA0104.20.431
MA0105.10.23
MA0106.10.00697
MA0107.10.283
MA0108.28.27421e-4
MA0111.10.105
MA0112.20.00141
MA0113.10.283
MA0114.10.404
MA0115.10.635
MA0116.10.242
MA0117.10.959
MA0119.10.0653
MA0122.10.978
MA0124.10.602
MA0125.10.465
MA0131.10.474
MA0135.10.552
MA0136.10.0923
MA0137.20.06
MA0138.20.8
MA0139.10.514
MA0140.10.228
MA0141.10.406
MA0142.10.989
MA0143.10.633
MA0144.10.643
MA0145.10.0934
MA0146.10.361
MA0147.10.767
MA0148.10.267
MA0149.10.417
MA0150.10.0481
MA0152.10.896
MA0153.10.947
MA0154.10.0887
MA0155.10.0982
MA0156.10.761
MA0157.10.505
MA0159.10.289
MA0160.10.562
MA0162.10.0316
MA0163.10.0024
MA0164.10.593
MA0258.10.0597
MA0259.10.794



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10839

Novel motifP-value
10.435
100.542
1000.961
1010.573
1020.995
1030.215
1040.423
1050.865
1060.0175
1070.0334
1080.497
1090.0713
110.0677
1100.366
1110.518
1120.575
1130.178
1140.0765
1150.824
1160.207
1170.413
1180.818
1190.16
120.886
1200.07
1210.558
1220.392
1230.0972
1240.688
1250.745
1260.915
1270.885
1280.146
1290.706
130.837
1300.89
1310.134
1320.788
1330.715
1340.0998
1350.0615
1360.892
1370.705
1380.449
1390.194
140.673
1400.618
1410.175
1421
1430.00109
1440.863
1450.362
1460.217
1470.345
1480.571
1490.215
150.324
1500.11
1510.689
1520.0154
1530.473
1540.716
1550.0953
1560.852
1570.403
1580.124
1590.457
160.119
1600.1
1610.742
1620.323
1630.564
1640.231
1650.425
1660.822
1670.704
1680.327
1690.0489
170.103
180.0713
190.0737
20.266
200.728
210.693
220.197
230.147
240.155
250.618
260.521
270.579
280.445
290.38
30.321
300.776
310.301
322.28569e-4
330.602
340.496
350.337
360.53
370.0308
380.796
390.376
40.389
400.134
410.3
420.616
430.324
440.539
450.332
460.148
470.241
480.308
490.413
50.482
500.473
510.937
520.51
530.354
540.612
550.531
560.333
570.416
580.816
590.0268
60.988
600.44
610.879
620.606
630.12
640.414
650.209
660.498
670.557
680.299
690.896
70.922
700.235
710.412
720.92
730.00746
740.929
750.328
760.986
770.0289
780.771
790.166
80.0458
800.357
810.443
820.265
830.581
840.648
850.157
860.454
870.0228
880.0794
890.0684
90.415
900.671
910.298
920.35
930.638
940.627
950.131
960.695
970.211
980.464
990.00826



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10839


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000176 (human smooth muscle cell of umbilical artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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