FF:11724-123D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005346 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |accession_numbers=CAGE;DRX008831;DRR009703;DRZ001128;DRZ002513;DRZ012478;DRZ013863 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000956,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002609 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000203,FF:0000204 | |||
|comment=Previously: Mouse Neurons - substantia nigra, donor1 | |comment=Previously: Mouse Neurons - substantia nigra, donor1 | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:55631042..55631102,-!p1@Neurod6!2.79!622.14!Neurod6;;chr11:98190918..98190951,-!p1@Neurod2!2.45!280.17!Neurod2;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!2.38!301.22!Pou3f3;;chr1:179374784..179374800,+!p2@Zfp238!2.36!268.35!Zfp238;;chr3:127336052..127336058,+!p1@Neurog2!2.30!200.54!Neurog2;;chr2:61642631..61642684,+!p1@Tbr1!2.21!159.47!Tbr1;;chr9:118387300..118387317,+!p1@Eomes!2.13!134.90!Eomes;;chr12:28027561..28027591,-!p1@Sox11!2.10!776.53!Sox11;;chr2:38206580..38206600,+!p2@Lhx2!2.01!124.95!Lhx2;;chr2:146047829..146047847,+!p1@Insm1!1.87!128.89!Insm1;;chr2:38206744..38206766,+!p1@Lhx2!1.82!77.77!Lhx2;;chr12:30213247..30213333,+!p1@Myt1l!1.82!65.22!Myt1l;;chr8:87297280..87297326,-!p2@Nfix!1.81!144.02!Nfix;;chrX:58146612..58146615,-!p1@Sox3!1.78!59.83!Sox3;;chrX:90531838..90531861,+!p1@Arx!1.72!63.35!Arx;;chr15:76352832..76352900,-!p1@Scrt1!1.70!48.63!Scrt1;;chr1:57028125..57028149,-!p2@Satb2!1.66!44.38!Satb2;;chr2:79296783..79296801,-!p1@Neurod1!1.65!43.65!Neurod1;;chr2:61642743..61642758,+!p2@Tbr1!1.64!43.03!Tbr1;;chr5:98609885..98609900,+!p1@Prdm8!1.62!40.96!Prdm8;;chr1:179374820..179374831,+!p3@Zfp238!1.61!39.82!Zfp238;;chr3:95032091..95032183,-!p1@Mllt11!1.59!307.96!Mllt11;;chr12:50483639..50483654,+!p1@Foxg1!1.59!38.26!Foxg1;;chr8:12395603..12395621,+!p1@Sox1!1.58!36.81!Sox1;;chr3:17954233..17954249,+!p1@Bhlhe22!1.56!35.57!Bhlhe22;;chr6:85137520..85137563,+!p1@Emx1!1.56!35.25!Emx1;;chr13:56353536..56353542,-!p1@Neurog1!1.55!34.22!Neurog1;;chr6:144157924..144157955,-!p2@Sox5!1.54!41.37!Sox5;;chr7:30088977..30089002,+!p2@Dpf1!1.51!43.13!Dpf1;;chr7:116154364..116154444,+!p1@Tub!1.50!51.64!Tub;;chr14:13178361..13178386,-!p2@Fezf2!1.50!30.80!Fezf2;;chr2:61642558..61642595,+!p3@Tbr1!1.49!29.97!Tbr1;;chr1:173987720..173987729,-!p1@Nhlh1!1.48!29.24!Nhlh1;;chr8:87297330..87297365,-!p5@Nfix!1.47!28.72!Nfix;;chr14:13178147..13178185,-!p1@Fezf2!1.47!28.51!Fezf2;;chr6:144152648..144152680,-!p5@Sox5!1.46!27.89!Sox5;;chr11:21901608..21901634,-!p1@Otx1!1.46!27.89!Otx1;;chr12:109242266..109242295,-!p1@Bcl11b!1.44!214.84!Bcl11b;;chr4:124334894..124334899,+!p1@Pou3f1!1.44!34.32!Pou3f1;;chr4:154335024..154335039,+!p1@Hes5!1.43!31.00!Hes5;;chr4:22415443..22415506,-!p1@Pou3f2!1.43!26.03!Pou3f2;;chr5:24104751..24104773,-!p5@Smarcd3!1.43!25.92!Smarcd3;;chr7:30092993..30093076,+!p1@Dpf1!1.42!43.34!Dpf1;;chr4:82145196..82145229,-!p7@Nfib!1.41!24.47!Nfib;;chr19:59533221..59533271,+!p1@Emx2!1.40!29.55!Emx2;;chr1:179374862..179374873,+!p6@Zfp238!1.39!23.74!Zfp238;;chr2:172375081..172375105,+!p1@Tfap2c!1.39!23.43!Tfap2c;;chr13:29045321..29045337,-!p2@Sox4!1.36!29.34!Sox4;;chr19:7342725..7342784,+!p1@Rcor2!1.35!86.17!Rcor2;;chr4:109650609..109650653,+!p1@Dmrta2!1.34!21.05!Dmrta2;;chr2:71384802..71384815,-!p1@Dlx2!1.33!24.99!Dlx2;;chr12:50483663..50483678,+!p3@Foxg1!1.33!20.22!Foxg1;;chr10:42303385..42303401,-!p1@Nr2e1!1.33!20.22!Nr2e1;;chr1:57028157..57028173,-!p3@Satb2!1.32!19.80!Satb2;;chr1:57029281..57029326,-!p1@Satb2!1.31!30.28!Satb2;;chr9:118387969..118387984,+!p2@Eomes!1.31!19.39!Eomes;;chr11:23978111..23978134,+!p3@Bcl11a!1.29!38.05!Bcl11a;;chr1:179374764..179374776,+!p5@Zfp238!1.29!18.56!Zfp238;;chr4:119960301..119960359,-!p1@Foxo6!1.28!57.96!Foxo6;;chr4:54957886..54957907,+!p3@Zfp462!1.28!31.00!Zfp462;;chr14:13178323..13178347,-!p3@Fezf2!1.28!17.94!Fezf2;;chr18:69680960..69681007,+!p10@Tcf4!1.27!23.02!Tcf4;;chr11:23977742..23977794,+!p6@Bcl11a!1.27!21.88!Bcl11a;;chr2:151906844..151906873,+!p3@Scrt2!1.27!17.83!Scrt2;;chr2:151907546..151907561,+!p1@Scrt2!1.27!17.73!Scrt2;;chr3:101814061..101814094,+!p1@Nhlh2!1.27!17.42!Nhlh2;;chr17:48015839..48015915,-!p3@Foxp4!1.26!20.12!Foxp4;;chr11:98190955..98190968,-!p2@Neurod2!1.26!17.21!Neurod2;;chr5:24104540..24104584,-!p7@Smarcd3!1.26!17.11!Smarcd3;;chr3:34548909..34548927,+!p1@Sox2!1.25!28.00!Sox2;;chr12:50485973..50486015,+!p2@Foxg1!1.25!16.80!Foxg1;;chr4:22415290..22415307,-!p2@Pou3f2!1.25!16.59!Pou3f2;;chr6:55631251..55631265,-!p2@Neurod6!1.23!16.07!Neurod6;;chr12:30219426..30219506,+!p2@Myt1l!1.22!15.66!Myt1l;;chr7:25292160..25292213,+!p3@Zfp428!1.20!36.40!Zfp428;;chr2:38194778..38194798,+!p3@Lhx2!1.20!14.83!Lhx2;;chr1:57028606..57028625,-!p4@Satb2!1.20!14.72!Satb2;;chr12:54349410..54349461,+!p1@Npas3!1.19!17.52!Npas3;;chr19:7342786..7342803,+!p2@Rcor2!1.17!18.35!Rcor2;;chr6:144157968..144157989,-!p7@Sox5!1.17!13.89!Sox5;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!1.16!13.38!Pou3f3;;chr2:115891534..115891589,-!p1@Meis2!1.15!183.43!Meis2;;chr2:152223783..152223812,-!p4@Sox12!1.15!30.38!Sox12;;chr3:17954392..17954407,+!p2@Bhlhe22!1.15!13.06!Bhlhe22;;chr11:23980664..23980706,+!p2@Bcl11a!1.14!56.10!Bcl11a;;chr4:82145232..82145259,-!p9@Nfib!1.14!12.86!Nfib;;chr2:151907338..151907360,+!p2@Scrt2!1.13!12.44!Scrt2;;chr7:30089006..30089022,+!p3@Dpf1!1.13!12.34!Dpf1;;chr4:82151274..82151290,-!p3@Nfib!1.12!197.22!Nfib;;chr12:12948633..12948651,-!p1@Mycn!1.12!115.92!Mycn;;chr14:118636238..118636257,-!p2@Sox21!1.12!12.24!Sox21;;chr4:87678709..87678726,-!p4@Mllt3!1.11!36.81!Mllt3;;chr10:86956396..86956411,-!p1@Ascl1!1.10!18.15!Ascl1;;chr2:181501745..181501778,+!p1@Myt1!1.10!11.61!Myt1;;chr8:87297878..87297935,-!p3@Nfix!1.09!25.40!Nfix;;chr17:37140628..37140631,+!p2@Zfp57!1.09!22.50!Zfp57;;chr18:69753168..69753186,+!p12@Tcf4!1.09!15.35!Tcf4;;chr14:118636214..118636235,-!p1@Sox21!1.09!13.48!Sox21;;chr13:78339382..78339420,-!p3@Nr2f1!1.09!13.17!Nr2f1;;chr2:105515586..105515606,+!p4@Pax6!1.09!11.20!Pax6;;chr18:69753145..69753159,+!p14@Tcf4!1.08!15.03!Tcf4;;chr13:78338076..78338104,-!p4@Nr2f1!1.08!14.00!Nr2f1;;chr19:19185671..19185693,-!p1@Rorb!1.07!26.13!Rorb;;chr4:97248607..97248649,+!p15@Nfia!1.07!10.68!Nfia;;chr13:29045559..29045574,-!p1@Sox4!1.06!869.75!Sox4;;chr7:91558472..91558512,-!p2@Arnt2!1.06!15.03!Arnt2;;chr11:23978229..23978268,+!p8@Bcl11a!1.06!11.92!Bcl11a;;chr17:37139472..37139514,+!p1@Zfp57!1.05!69.16!Zfp57;;chr2:105509045..105509071,+!p1@Pax6!1.04!9.95!Pax6;;chr6:38204274..38204327,-!p3@D630045J12Rik!1.03!19.39!D630045J12Rik;;chr4:150503457..150503498,-!p3@Camta1!1.03!11.09!Camta1;;chr3:34549096..34549111,+!p3@Sox2!1.03!9.75!Sox2;;chr7:25292141..25292158,+!p2@Zfp428!1.02!33.70!Zfp428;;chr13:78339428..78339466,-!p2@Nr2f1!1.02!13.06!Nr2f1;;chr6:144157893..144157905,-!p14@Sox5!1.02!9.44!Sox5;;chr1:179372625..179372654,+!p4@Zfp238!1.01!14.52!Zfp238;;chr8:87298020..87298041,-!p9@Nfix!1.01!9.33!Nfix;;chr11:21901587..21901604,-!p2@Otx1!1.01!9.23!Otx1;;chr6:144157991..144158007,-!p9@Sox5!1.01!9.23!Sox5;;chrX:108009761..108009788,+!p1@Pou3f4!1.01!9.12!Pou3f4;;chr2:65683890..65683907,+!p1@Csrnp3!1.00!17.52!Csrnp3;;chr2:105515635..105515661,+!p5@Pax6!1.00!9.02!Pax6;;chr9:21420744..21420755,+!p3@Smarca4!0.99!25.82!Smarca4;;chr13:15555670..15555771,+!p2@Gli3!0.99!22.50!Gli3;;chr18:69681020..69681032,+!p23@Tcf4!0.99!8.81!Tcf4;;chr3:34549144..34549155,+!p5@Sox2!0.99!8.71!Sox2;;chr6:51382677..51382783,+!p1@Nfe2l3!0.97!22.09!Nfe2l3;;chr2:115890953..115890974,-!p6@Meis2!0.97!12.65!Meis2;;chr12:109242296..109242307,-!p3@Bcl11b!0.97!12.24!Bcl11b;;chr13:48356475..48356492,+!p1@Id4!0.96!180.21!Id4;;chr10:13685585..13685645,+!p2@Hivep2!0.96!29.14!Hivep2;;chr9:18278055..18278126,-!p1@Zfp558!0.96!23.95!Zfp558;;chr2:35960919..35960954,-!p1@Lhx6!0.96!15.45!Lhx6;;chr3:34548946..34548972,+!p2@Sox2!0.96!9.12!Sox2;;chr4:122673278..122673336,+!p1@Mycl1!0.95!25.72!Mycl1;;chr13:78339476..78339515,-!p1@Nr2f1!0.95!12.44!Nr2f1;;chr6:6832076..6832092,-!p1@Dlx5!0.95!9.33!Dlx5;;chr6:55631324..55631335,-!p3@Neurod6!0.95!7.88!Neurod6;;chr11:98603160..98603171,+!p3@Thra!0.94!37.22!Thra;;chr15:76352740..76352781,-!p5@Scrt1!0.94!7.78!Scrt1;;chr4:82151178..82151262,-!p1@Nfib!0.93!314.70!Nfib;;chr14:122874619..122874634,+!p1@Zic2!0.93!7.57!Zic2;;chr1:57028111..57028122,-!p9@Satb2!0.93!7.47!Satb2;;chr14:13178241..13178254,-!p4@Fezf2!0.92!7.36!Fezf2;;chr11:23978270..23978290,+!p9@Bcl11a!0.92!7.26!Bcl11a;;chr8:87238155..87238187,-!p13@Nfix!0.92!7.26!Nfix;;chr4:97444297..97444323,+!p2@Nfia!0.91!114.99!Nfia;;chr15:100430414..100430470,-!p1@Pou6f1!0.91!22.81!Pou6f1;;chr4:54957910..54957954,+!p2@Zfp462!0.91!22.09!Zfp462;;chr4:13670571..13670625,+!p1@Runx1t1!0.91!20.12!Runx1t1;;chr4:13670499..13670526,+!p2@Runx1t1!0.91!16.49!Runx1t1;;chr6:85137491..85137504,+!p3@Emx1!0.91!7.05!Emx1;;chr4:87678673..87678706,-!p6@Mllt3!0.90!15.76!Mllt3;;chr10:42303452..42303470,-!p2@Nr2e1!0.90!6.95!Nr2e1;;chr6:85137505..85137517,+!p2@Emx1!0.89!6.84!Emx1;;chr4:22415600..22415616,-!p3@Pou3f2!0.89!6.84!Pou3f2;;chr1:179372543..179372557,+!p9@Zfp238!0.89!6.74!Zfp238;;chr4:54960870..54960926,+!p1@Zfp462!0.88!25.20!Zfp462;;chr1:170361991..170362015,-!p6@Pbx1!0.88!15.45!Pbx1;;chr6:38204214..38204267,-!p4@D630045J12Rik!0.88!12.75!D630045J12Rik;;chr4:150482563..150482655,-!p2@Camta1!0.87!24.06!Camta1;;chr9:106356278..106356292,+!p3@Pcbp4!0.87!11.41!Pcbp4;;chr5:122499831..122499891,-!p1@Cux2!0.87!10.16!Cux2;;chr13:78339134..78339185,-!p5@Nr2f1!0.87!7.98!Nr2f1;;chr12:28027256..28027282,-!p2@Sox11!0.87!6.43!Sox11;;chr17:35031460..35031518,+!p1@Zbtb12!0.86!33.08!Zbtb12;;chr4:48058129..48058179,+!p2@Nr4a3!0.86!12.34!Nr4a3;;chr2:73109983..73109996,+!p1@Sp9!0.86!6.33!Sp9;;chr10:82226649..82226694,-!p2@Nfyb!0.85!40.96!Nfyb;;chr11:23978078..23978096,+!p4@Bcl11a!0.85!19.39!Bcl11a;;chr5:24107676..24107722,-!p4@Smarcd3!0.85!8.50!Smarcd3;;chr11:23978291..23978323,+!p7@Bcl11a!0.85!6.12!Bcl11a;;chr2:71367142..71367167,+!p2@Dlx1!0.85!6.01!Dlx1;;chrX:66613481..66613562,+!p1@Aff2!0.84!26.96!Aff2;;chr18:69752912..69752928,+!p9@Tcf4!0.84!9.23!Tcf4;;chr1:38684383..38684394,-!p4@Aff3!0.84!8.19!Aff3;;chr4:82151653..82151706,-!p2@Nfib!0.83!174.51!Nfib;;chr3:51144477..51144506,-!p6@Elf2!0.83!9.12!Elf2;;chr12:30220074..30220102,+!p3@Myt1l!0.83!5.70!Myt1l;;chr7:25292331..25292421,+!p1@Zfp428!0.82!42.51!Zfp428;;chr15:75447105..75447159,+!p1@Zfp41!0.82!24.16!Zfp41;;chr2:152223881..152223933,-!p3@Sox12!0.82!20.01!Sox12;;chr7:135019147..135019187,-!p3@Zfp668!0.82!12.86!Zfp668;;chr2:127347067..127347093,-!p1@Kcnip3!0.82!9.64!Kcnip3;;chr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Gatad1!0.32!2.38!Gatad1;;chr7:148513548..148513560,-!p7@Deaf1!0.32!2.18!Deaf1;;chr4:154011072..154011095,-!p6@Prdm16!0.32!1.45!Prdm16;;chr7:5003087..5003098,+!p6@Zfp580!0.32!1.45!Zfp580;;chr6:47998855..47998863,-!p5@Zfp777!0.32!1.35!Zfp777;;chr11:121121297..121121369,+!p1@Foxk2!0.31!108.15!Foxk2;;chr4:87679232..87679277,-!p1@Mllt3!0.31!21.46!Mllt3;;chr10:85379647..85379751,-!p1@Prdm4!0.31!20.01!Prdm4;;chr3:14578609..14578687,+!p1@E2f5!0.31!17.11!E2f5;;chr2:44965593..44965624,-!p3@Zeb2!0.31!9.75!Zeb2;;chr2:37278526..37278575,-!p2@Rc3h2!0.31!7.05!Rc3h2;;chr4:6917606..6917681,-!p1@Tox!0.31!7.05!Tox;;chr7:25101609..25101678,-!p1@Zfp94!0.31!6.01!Zfp94;;chr4:133310175..133310212,-!p5@Arid1a!0.31!5.18!Arid1a;;chr19:53384965..53384984,+!p4@Mxi1!0.31!4.67!Mxi1;;chr12:110031207..110031224,+!p5@Yy1!0.31!4.67!Yy1;;chr7:30857891..30857943,-!p1@LOC100505067,p3@Zfp82!0.31!4.25!Zfp82;;chr18:69681439..69681456,+!p7@Tcf4!0.31!3.94!Tcf4;;chr19:41557591..41557634,+!p3@Lcor!0.31!3.94!Lcor;;chr2:44972869..44972895,-!p12@Zeb2!0.31!2.80!Zeb2;;chr5:138199361..138199441,+!p2@Tsc22d4!0.31!2.70!Tsc22d4;;chr4:133310214..133310231,-!p11@Arid1a!0.31!2.28!Arid1a;;chr4:63071739..63071760,-!p5@Akna!0.31!1.87!Akna;;chr9:20385868..20385902,+!p3@Zfp846!0.31!1.87!Zfp846;;chr6:92041372..92041383,+!p6@Nr2c2!0.31!1.56!Nr2c2;;chr11:98601972..98601986,+!p10@Thra!0.31!1.45!Thra;;chr2:115890495..115890507,-!p16@Meis2!0.31!1.24!Meis2;;chr1:57029027..57029056,-!p7@Satb2!0.31!1.04!Satb2;;chr7:17200127..17200137,-!p11@Grlf1!0.31!1.04!Grlf1;;chr5:24104452..24104472,-!p11@Smarcd3!0.31!1.04!Smarcd3;;chr8:12395287..12395295,+!p9@Sox1!0.31!1.04!Sox1;;chrX:55283799..55283813,+!p1@Zic3!0.31!1.04!Zic3;;chr4:13678723..13678739,+!p10@Runx1t1!0.31!1.04!Runx1t1;;chr3:17954258..17954267,+!p7@Bhlhe22!0.31!1.04!Bhlhe22;;chr17:51951662..51951670,-!p21@Satb1!0.31!1.04!Satb1;;chr9:20757282..20757325,-!p2@Dnmt1!0.30!41.89!Dnmt1;;chrX:71330925..71330991,-!p1@Mecp2!0.30!41.16!Mecp2;;chrX:20527671..20527719,-!p1@Elk1!0.30!40.85!Elk1;;chr15:76181777..76181802,+!p2@Maf1!0.30!29.03!Maf1;;chr13:83663868..83663894,+!p2@Mef2c!0.30!25.51!Mef2c;;chr4:142802594..142802631,-!p1@Prdm2!0.30!17.42!Prdm2;;chr7:134170496..134170539,-!p4@Maz!0.30!15.24!Maz;;chr19:5610038..5610066,-!p1@Kat5!0.30!8.09!Kat5;;chr3:130813200..130813252,+!p1@Lef1!0.30!7.36!Lef1;;chr15:75799717..75799742,+!p1@Zfp707!0.30!6.43!Zfp707;;chr7:134489096..134489123,-!p2@Zfp768!0.30!4.87!Zfp768;;chr7:35841581..35841605,-!p2@Cebpg!0.30!3.94!Cebpg;;chr14:100684075..100684098,-!p3@Klf12!0.30!3.73!Klf12;;chr4:97444563..97444572,+!p12@Nfia!0.30!2.90!Nfia;;chr4:63071779..63071791,-!p3@Akna!0.30!1.87!Akna;;chr17:51971932..51971958,-!p2@Satb1!0.30!1.66!Satb1;;chr13:83663546..83663560,+!p4@Mef2c!0.30!1.56!Mef2c;;chr4:129118044..129118067,-!p1@Zbtb8b!0.30!1.45!Zbtb8b;;chr15:40486854..40486867,+!p7@Zfpm2!0.30!1.35!Zfpm2;;chr10:116661536..116661555,-!p1@Yeats4!0.29!99.75!Yeats4;;chr11:112643496..112643562,+!p1@Sox9!0.29!66.15!Sox9;;chr16:20141134..20141213,+!p1@Yeats2!0.29!45.83!Yeats2;;chr8:81923316..81923334,-!p1@Smad1!0.29!27.17!Smad1;;chr8:34496298..34496366,+!p1@Purg!0.29!14.31!Purg;;chr7:5003117..5003159,+!p1@Zfp580!0.29!12.65!Zfp580;;chr1:138521528..138521572,+!p1@Zfp281!0.29!9.64!Zfp281;;chr11:97524415..97524455,+!p2@Mllt6!0.29!6.01!Mllt6;;chr11:102179101..102179130,-!p3@Ubtf!0.29!5.60!Ubtf;;chr10:79896347..79896358,-!p2@Tcf3!0.29!5.60!Tcf3;;chr19:8876976..8877011,+!p1@Zbtb3!0.29!5.18!Zbtb3;;chr3:30500978..30501018,+!p1@Mynn!0.29!4.04!Mynn;;chr14:55711114..55711159,-!p2@Zfhx2!0.29!3.21!Zfhx2;;chr5:34163132..34163158,+!p3@Whsc1!0.29!2.90!Whsc1;;chr17:51951634..51951651,-!p6@Satb1!0.29!2.59!Satb1;;chr8:92872177..92872201,-!p2@Tox3!0.29!2.28!Tox3;;chr4:119486912..119486954,+!p3@Hivep3!0.29!2.28!Hivep3;;chr11:99092280..99092302,-!p3@Smarce1!0.29!1.97!Smarce1;;chr7:17200198..17200209,-!p8@Grlf1!0.29!1.56!Grlf1;;chr13:15555555..15555574,+!p5@Gli3!0.29!1.56!Gli3;;chr16:43503720..43503739,+!p18@Zbtb20!0.29!1.14!Zbtb20;;chr17:51971991..51972003,-!p4@Satb1!0.29!0.93!Satb1;;chr17:51951383..51951409,-!p19@Satb1!0.29!0.93!Satb1;;chr17:37139555..37139562,+!p6@Zfp57!0.29!0.93!Zfp57;;chr14:56443742..56443756,+!p6@Nfatc4!0.29!0.93!Nfatc4;;chr2:35959541..35959548,-!p2@Lhx6!0.29!0.93!Lhx6;;chr6:14851377..14851396,+!p10@Foxp2!0.29!0.93!Foxp2;;chr7:116093986..116093999,+!p4@Tub!0.29!0.93!Tub;;chr7:52252978..52252989,+!p5@Irf3!0.29!0.93!Irf3;;chr9:96631780..96631791,-!p13@Zbtb38!0.29!0.93!Zbtb38;;chr4:119486980..119486993,+!p6@Hivep3!0.29!0.93!Hivep3;;chr4:89354729..89354776,+!p1@Dmrta1!0.29!0.93!Dmrta1;;chr2:71368786..71368813,+!p5@Dlx1!0.29!0.93!Dlx1;;chr4:82351566..82351607,-!p10@Nfib!0.29!0.93!Nfib;;chr11:99091744..99091778,-!p1@Smarce1!0.28!73.20!Smarce1;;chr5:138526311..138526375,+!p1@Zkscan1!0.28!61.28!Zkscan1;;chr1:173341436..173341468,+!p1@Usf1!0.28!41.79!Usf1;;chr8:13869673..13869740,+!p1@Zfp828!0.28!40.75!Zfp828;;chr13:53076396..53076452,-!p1@Nfil3!0.28!30.38!Nfil3;;chr11:95528303..95528319,+!p1@1700071K01Rik,p1@Phb!0.28!23.12!Phb;;chr7: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| |||
|ffid_belonging_in_development=CL:0000133,CL:0000337,CL:0000031,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|has_quality= | |has_quality= | ||
|id=FF:11724-123D5 | |id=FF:11724-123D5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000204 | ||
|is_obsolete= | |||
|library_id=CNhs12025 | |||
|library_id_phase_based=2:CNhs12025 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11724 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11724 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520cortical%252c%2520donor1.CNhs12025.11724-123D5.mm9.nobarcode.rdna.fa.gz | |||
|name=Mouse Neurons - cortical, donor1 | |name=Mouse Neurons - cortical, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 41: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12025,LSID837,release011,COMPLETED | |profile_hcage=CNhs12025,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.0769340436171085,0,0,0,0.0428469550828748,0,-0.0341763248624827,0,0,0,0,-0.00249554172308415,0,0,0,0,0,0,0.117075530684408,0,0,0,0,0,0,0,0,0,0,0,0,0.134153895493424,-0.476579093650574,0,0,0,0,0,-0.0289377219282723,0.15068229631276,0.0830554630333198,-0.230932301070944,0.475389123404048,0.210087710822348,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,0.010854767423356,-0.267803702256511,-0.158091042771083,0.0311678345987045,0,0,0.13667273944311,0.0428469550828748,0.0428469550828748,0,0.0785503219393637,0.0566784672946287,0.14934288067383,-0.0359846397570327,0,0,0,0,0,0,0.0806079264115185,-0.0562210497579834,-0.009116048372359,0,0,0,0.210087710822348,0 | |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
Line 56: | Line 76: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 75: | Line 96: | ||
|sample_tissue=cortex | |sample_tissue=cortex | ||
|top_motifs=LHX3,4:3.83895722072;NKX6-1,2:2.66029276989;SOX2:2.4109368412;OCT4_SOX2{dimer}:2.34257055869;TFDP1:2.19601236743;LEF1_TCF7_TCF7L1,2:2.09819158589;POU5F1:2.05562419203;MZF1:2.05439621439;POU1F1:1.98937800062;BREu{core}:1.92109477371;EN1,2:1.79615149272;MED-1{core}:1.7952731859;HMGA1,2:1.79152197024;ZFP161:1.7684738208;FOXQ1:1.74582294317;ONECUT1,2:1.72863143422;ZNF384:1.72447772862;PRDM1:1.71994541754;UFEwm:1.69138002858;POU6F1:1.59438744763;SOX17:1.58514121308;NRF1:1.54687928762;SOX{8,9,10}:1.52795010344;POU3F1..4:1.51732056807;PAX4:1.50700804737;FOXD3:1.4897628461;AHR_ARNT_ARNT2:1.46846081994;CUX2:1.45450953286;MTE{core}:1.44202101842;ZNF143:1.39195866331;PRRX1,2:1.38786387666;PAX8:1.31487577178;CDC5L:1.31048662235;TFAP2B:1.29635478677;HOXA9_MEIS1:1.29337631557;PPARG:1.28374374365;VSX1,2:1.27913431837;NANOG{mouse}:1.21275998255;KLF4:1.1745480246;ZBTB6:1.16512428114;NANOG:1.15753267888;HOX{A5,B5}:1.15488944093;EGR1..3:1.15341419689;PATZ1:1.1048939505;POU2F1..3:1.0821905343;YY1:1.05714851878;ZBTB16:1.04376593439;NFY{A,B,C}:1.01360694067;TEF:0.987617606611;RREB1:0.969135299992;CDX1,2,4:0.965139162523;NKX2-3_NKX2-5:0.920216024111;ADNP_IRX_SIX_ZHX:0.90588462146;RBPJ:0.898945226826;NKX3-2:0.872078375374;HIC1:0.862912315869;SMAD1..7,9:0.859430091211;RORA:0.85897893891;DBP:0.771278665793;BPTF:0.740419870605;ZNF423:0.714016323117;RFX1:0.691876702349;GTF2I:0.677233450019;PITX1..3:0.664136467131;ELK1,4_GABP{A,B1}:0.640274312832;GFI1B:0.627275166084;NHLH1,2:0.61862735181;PAX6:0.615822322048;REST:0.587852833421;HOX{A4,D4}:0.558413234308;STAT1,3:0.491428984259;JUN:0.490867698199;EVI1:0.476935364323;GATA4:0.471385719503;CREB1:0.470516952216;MAZ:0.457978737223;ATF5_CREB3:0.441794548363;IKZF2:0.441175128087;NR3C1:0.410877098168;GTF2A1,2:0.368934787864;PAX5:0.360464783612;GCM1,2:0.360307286468;EP300:0.346418677488;NKX2-2,8:0.337549574028;E2F1..5:0.331808030099;HMX1:0.331089979597;NR5A1,2:0.314035442868;FOXP3:0.301157664491;ALX1:0.293167503897;SOX5:0.287206054262;ZIC1..3:0.280932757116;ATF2:0.27537675892;FOXL1:0.250612806121;CRX:0.211318464165;NFIX:0.202130344046;AIRE:0.200077312992;HAND1,2:0.188422490734;MYB:0.183228222842;RFX2..5_RFXANK_RFXAP:0.183075157721;GFI1:0.173832691118;HSF1,2:0.163035879943;T:0.152669422746;FOX{F1,F2,J1}:0.121467518702;ARID5B:0.0630736326967;GZF1:0.0627705758352;NFE2L1:0.0269461236603;STAT5{A,B}:0.0229724956571;LMO2:0.0124463800227;HBP1_HMGB_SSRP1_UBTF:-0.0478128007343;MYFfamily:-0.0546511239095;HIF1A:-0.0674825693806;FOXP1:-0.0704303579169;TGIF1:-0.0774085209036;NKX3-1:-0.0891651677626;ATF4:-0.128434643952;TLX1..3_NFIC{dimer}:-0.139543377553;MAFB:-0.146517317315;SP1:-0.159714374609;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.167091998675;FOX{I1,J2}:-0.208793620813;NKX2-1,4:-0.225474109917;bHLH_family:-0.229987607732;RXR{A,B,G}:-0.235933787003;NFIL3:-0.238679555051;FOXM1:-0.245359578275;PBX1:-0.260306119057;MTF1:-0.262883726005;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.263170162525;TFAP2{A,C}:-0.264726006655;NR1H4:-0.266149477644;NR6A1:-0.304926362386;HES1:-0.3726437887;TOPORS:-0.374558206038;SPIB:-0.409547339349;TAL1_TCF{3,4,12}:-0.424791077726;RUNX1..3:-0.483691778084;ALX4:-0.494934411072;TLX2:-0.504936548511;FOXN1:-0.54965033469;MEF2{A,B,C,D}:-0.569958341556;FOXO1,3,4:-0.590581456867;HLF:-0.597527348497;SPI1:-0.601452900102;ELF1,2,4:-0.620499145775;NFKB1_REL_RELA:-0.626019651151;GATA6:-0.626780017799;HNF4A_NR2F1,2:-0.63961817632;SPZ1:-0.669907473483;AR:-0.684356846867;FOXA2:-0.685547273444;HNF1A:-0.712390613601;CEBPA,B_DDIT3:-0.73732642033;XCPE1{core}:-0.738717797719;MYBL2:-0.738787707458;MYOD1:-0.741344954306;PAX2:-0.742060857693;PAX1,9:-0.752278266075;ZNF238:-0.785863854779;PDX1:-0.80920762877;SNAI1..3:-0.812604557422;TFAP4:-0.814052145945;ZEB1:-0.834660561931;IKZF1:-0.857806168908;TEAD1:-0.885268426573;NFATC1..3:-0.887304680815;GLI1..3:-0.908348976976;TP53:-0.915606838165;ESRRA:-0.932369881542;ESR1:-0.998263924246;DMAP1_NCOR{1,2}_SMARC:-1.00165855751;TBX4,5:-1.03224825946;TBP:-1.04186045497;NFE2:-1.04375642871;ETS1,2:-1.06073125461;SREBF1,2:-1.0719913945;NFE2L2:-1.07942867417;RXRA_VDR{dimer}:-1.11239662458;ZNF148:-1.11365969555;EBF1:-1.13804688783;BACH2:-1.18278049385;FOX{D1,D2}:-1.19424934614;FOS_FOS{B,L1}_JUN{B,D}:-1.21665533262;IRF1,2:-1.25513894887;TFCP2:-1.33990059653;FOSL2:-1.34782558746;STAT2,4,6:-1.3879193054;IRF7:-1.45334838515;ATF6:-1.47090111824;SRF:-1.67449890937 | |top_motifs=LHX3,4:3.83895722072;NKX6-1,2:2.66029276989;SOX2:2.4109368412;OCT4_SOX2{dimer}:2.34257055869;TFDP1:2.19601236743;LEF1_TCF7_TCF7L1,2:2.09819158589;POU5F1:2.05562419203;MZF1:2.05439621439;POU1F1:1.98937800062;BREu{core}:1.92109477371;EN1,2:1.79615149272;MED-1{core}:1.7952731859;HMGA1,2:1.79152197024;ZFP161:1.7684738208;FOXQ1:1.74582294317;ONECUT1,2:1.72863143422;ZNF384:1.72447772862;PRDM1:1.71994541754;UFEwm:1.69138002858;POU6F1:1.59438744763;SOX17:1.58514121308;NRF1:1.54687928762;SOX{8,9,10}:1.52795010344;POU3F1..4:1.51732056807;PAX4:1.50700804737;FOXD3:1.4897628461;AHR_ARNT_ARNT2:1.46846081994;CUX2:1.45450953286;MTE{core}:1.44202101842;ZNF143:1.39195866331;PRRX1,2:1.38786387666;PAX8:1.31487577178;CDC5L:1.31048662235;TFAP2B:1.29635478677;HOXA9_MEIS1:1.29337631557;PPARG:1.28374374365;VSX1,2:1.27913431837;NANOG{mouse}:1.21275998255;KLF4:1.1745480246;ZBTB6:1.16512428114;NANOG:1.15753267888;HOX{A5,B5}:1.15488944093;EGR1..3:1.15341419689;PATZ1:1.1048939505;POU2F1..3:1.0821905343;YY1:1.05714851878;ZBTB16:1.04376593439;NFY{A,B,C}:1.01360694067;TEF:0.987617606611;RREB1:0.969135299992;CDX1,2,4:0.965139162523;NKX2-3_NKX2-5:0.920216024111;ADNP_IRX_SIX_ZHX:0.90588462146;RBPJ:0.898945226826;NKX3-2:0.872078375374;HIC1:0.862912315869;SMAD1..7,9:0.859430091211;RORA:0.85897893891;DBP:0.771278665793;BPTF:0.740419870605;ZNF423:0.714016323117;RFX1:0.691876702349;GTF2I:0.677233450019;PITX1..3:0.664136467131;ELK1,4_GABP{A,B1}:0.640274312832;GFI1B:0.627275166084;NHLH1,2:0.61862735181;PAX6:0.615822322048;REST:0.587852833421;HOX{A4,D4}:0.558413234308;STAT1,3:0.491428984259;JUN:0.490867698199;EVI1:0.476935364323;GATA4:0.471385719503;CREB1:0.470516952216;MAZ:0.457978737223;ATF5_CREB3:0.441794548363;IKZF2:0.441175128087;NR3C1:0.410877098168;GTF2A1,2:0.368934787864;PAX5:0.360464783612;GCM1,2:0.360307286468;EP300:0.346418677488;NKX2-2,8:0.337549574028;E2F1..5:0.331808030099;HMX1:0.331089979597;NR5A1,2:0.314035442868;FOXP3:0.301157664491;ALX1:0.293167503897;SOX5:0.287206054262;ZIC1..3:0.280932757116;ATF2:0.27537675892;FOXL1:0.250612806121;CRX:0.211318464165;NFIX:0.202130344046;AIRE:0.200077312992;HAND1,2:0.188422490734;MYB:0.183228222842;RFX2..5_RFXANK_RFXAP:0.183075157721;GFI1:0.173832691118;HSF1,2:0.163035879943;T:0.152669422746;FOX{F1,F2,J1}:0.121467518702;ARID5B:0.0630736326967;GZF1:0.0627705758352;NFE2L1:0.0269461236603;STAT5{A,B}:0.0229724956571;LMO2:0.0124463800227;HBP1_HMGB_SSRP1_UBTF:-0.0478128007343;MYFfamily:-0.0546511239095;HIF1A:-0.0674825693806;FOXP1:-0.0704303579169;TGIF1:-0.0774085209036;NKX3-1:-0.0891651677626;ATF4:-0.128434643952;TLX1..3_NFIC{dimer}:-0.139543377553;MAFB:-0.146517317315;SP1:-0.159714374609;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.167091998675;FOX{I1,J2}:-0.208793620813;NKX2-1,4:-0.225474109917;bHLH_family:-0.229987607732;RXR{A,B,G}:-0.235933787003;NFIL3:-0.238679555051;FOXM1:-0.245359578275;PBX1:-0.260306119057;MTF1:-0.262883726005;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.263170162525;TFAP2{A,C}:-0.264726006655;NR1H4:-0.266149477644;NR6A1:-0.304926362386;HES1:-0.3726437887;TOPORS:-0.374558206038;SPIB:-0.409547339349;TAL1_TCF{3,4,12}:-0.424791077726;RUNX1..3:-0.483691778084;ALX4:-0.494934411072;TLX2:-0.504936548511;FOXN1:-0.54965033469;MEF2{A,B,C,D}:-0.569958341556;FOXO1,3,4:-0.590581456867;HLF:-0.597527348497;SPI1:-0.601452900102;ELF1,2,4:-0.620499145775;NFKB1_REL_RELA:-0.626019651151;GATA6:-0.626780017799;HNF4A_NR2F1,2:-0.63961817632;SPZ1:-0.669907473483;AR:-0.684356846867;FOXA2:-0.685547273444;HNF1A:-0.712390613601;CEBPA,B_DDIT3:-0.73732642033;XCPE1{core}:-0.738717797719;MYBL2:-0.738787707458;MYOD1:-0.741344954306;PAX2:-0.742060857693;PAX1,9:-0.752278266075;ZNF238:-0.785863854779;PDX1:-0.80920762877;SNAI1..3:-0.812604557422;TFAP4:-0.814052145945;ZEB1:-0.834660561931;IKZF1:-0.857806168908;TEAD1:-0.885268426573;NFATC1..3:-0.887304680815;GLI1..3:-0.908348976976;TP53:-0.915606838165;ESRRA:-0.932369881542;ESR1:-0.998263924246;DMAP1_NCOR{1,2}_SMARC:-1.00165855751;TBX4,5:-1.03224825946;TBP:-1.04186045497;NFE2:-1.04375642871;ETS1,2:-1.06073125461;SREBF1,2:-1.0719913945;NFE2L2:-1.07942867417;RXRA_VDR{dimer}:-1.11239662458;ZNF148:-1.11365969555;EBF1:-1.13804688783;BACH2:-1.18278049385;FOX{D1,D2}:-1.19424934614;FOS_FOS{B,L1}_JUN{B,D}:-1.21665533262;IRF1,2:-1.25513894887;TFCP2:-1.33990059653;FOSL2:-1.34782558746;STAT2,4,6:-1.3879193054;IRF7:-1.45334838515;ATF6:-1.47090111824;SRF:-1.67449890937 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11724-123D5;search_select_hide=table117:11724-123D5 | |||
}} | }} |
Latest revision as of 18:16, 4 June 2020
Name: | Mouse Neurons - cortical, donor1 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs12025 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12025
0 | 0 |
1 | 0.189 |
10 | 0 |
100 | 0.767 |
1000 | -0.0157 |
1001 | -0.0631 |
1002 | 0.46 |
1003 | 0.537 |
1004 | 0.0428 |
1005 | -0.282 |
1006 | 0.0527 |
1007 | 0.0592 |
1008 | 0 |
1009 | -0.2 |
101 | -0.0748 |
1010 | 0 |
1011 | 0.0739 |
1012 | 0.0428 |
1013 | -0.184 |
1014 | 0.118 |
1015 | 0.426 |
1016 | 0.249 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0.389 |
1021 | 0.118 |
1022 | -0.124 |
1023 | 0 |
1024 | -0.14 |
1025 | 0 |
1026 | 0 |
1027 | 0.568 |
1028 | 0 |
1029 | -0.101 |
103 | -0.0719 |
1030 | 0 |
1031 | -0.477 |
1032 | -0.177 |
1033 | -0.0236 |
1034 | 0 |
1035 | 0 |
1036 | -0.12 |
1037 | 0 |
1038 | 0.186 |
1039 | -0.231 |
104 | 0 |
1040 | -0.173 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12025
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12025
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.207 |
10 | 10 | 0.202 |
100 | 100 | 0.981 |
101 | 101 | 0.704 |
102 | 102 | 0.703 |
103 | 103 | 0.119 |
104 | 104 | 0.896 |
105 | 105 | 0.433 |
106 | 106 | 0.00943 |
107 | 107 | 0.0511 |
108 | 108 | 0.644 |
109 | 109 | 0.00341 |
11 | 11 | 0.134 |
110 | 110 | 0.176 |
111 | 111 | 0.0423 |
112 | 112 | 0.00557 |
113 | 113 | 0.907 |
114 | 114 | 0.236 |
115 | 115 | 0.11 |
116 | 116 | 0.463 |
117 | 117 | 0.164 |
118 | 118 | 0.647 |
119 | 119 | 0.104 |
12 | 12 | 0.535 |
120 | 120 | 0.8 |
121 | 121 | 0.135 |
122 | 122 | 0.402 |
123 | 123 | 0.685 |
124 | 124 | 0.923 |
125 | 125 | 0.325 |
126 | 126 | 0.235 |
127 | 127 | 0.133 |
128 | 128 | 0.0227 |
129 | 129 | 0.172 |
13 | 13 | 1.27472e-4 |
130 | 130 | 0.738 |
131 | 131 | 0.436 |
132 | 132 | 0.705 |
133 | 133 | 0.526 |
134 | 134 | 0.531 |
135 | 135 | 0.184 |
136 | 136 | 0.109 |
137 | 137 | 0.294 |
138 | 138 | 0.782 |
139 | 139 | 0.234 |
14 | 14 | 0.581 |
140 | 140 | 0.508 |
141 | 141 | 0.0418 |
142 | 142 | 0.157 |
143 | 143 | 0.579 |
144 | 144 | 0.765 |
145 | 145 | 0.0852 |
146 | 146 | 0.34 |
147 | 147 | 0.992 |
148 | 148 | 0.78 |
149 | 149 | 0.0486 |
15 | 15 | 0.236 |
150 | 150 | 0.309 |
151 | 151 | 0.331 |
152 | 152 | 0.0359 |
153 | 153 | 0.945 |
154 | 154 | 0.978 |
155 | 155 | 0.574 |
156 | 156 | 0.00127 |
157 | 157 | 0.16 |
158 | 158 | 0.254 |
159 | 159 | 0.0954 |
160 | 160 | 0.327 |
161 | 161 | 0.242 |
162 | 162 | 0.989 |
163 | 163 | 0.0834 |
164 | 164 | 0.0263 |
165 | 165 | 0.00464 |
166 | 166 | 0.588 |
167 | 167 | 0.605 |
168 | 168 | 0.461 |
169 | 169 | 0.00575 |
17 | 17 | 0.0285 |
18 | 18 | 0.929 |
19 | 19 | 0.0442 |
2 | 2 | 0.42 |
20 | 20 | 0.807 |
21 | 21 | 0.542 |
22 | 22 | 0.0893 |
23 | 23 | 0.195 |
24 | 24 | 0.0299 |
25 | 25 | 0.553 |
26 | 26 | 0.00743 |
27 | 27 | 0.596 |
28 | 28 | 0.397 |
29 | 29 | 0.282 |
3 | 3 | 0.0838 |
30 | 30 | 0.405 |
31 | 31 | 0.768 |
32 | 32 | 0.258 |
33 | 33 | 0.235 |
34 | 34 | 0.488 |
35 | 35 | 0.666 |
36 | 36 | 0.562 |
37 | 37 | 0.00787 |
38 | 38 | 0.395 |
39 | 39 | 0.225 |
4 | 4 | 0.587 |
40 | 40 | 0.171 |
41 | 41 | 0.773 |
42 | 42 | 0.313 |
43 | 43 | 0.178 |
44 | 44 | 0.495 |
45 | 45 | 0.409 |
46 | 46 | 0.222 |
47 | 47 | 0.21 |
48 | 48 | 0.19 |
49 | 49 | 0.203 |
5 | 5 | 0.173 |
50 | 50 | 0.301 |
51 | 51 | 0.602 |
52 | 52 | 0.0714 |
53 | 53 | 0.44 |
54 | 54 | 0.532 |
55 | 55 | 0.472 |
56 | 56 | 0.279 |
57 | 57 | 0.932 |
58 | 58 | 0.197 |
59 | 59 | 0.0466 |
6 | 6 | 0.666 |
60 | 60 | 0.0137 |
61 | 61 | 0.352 |
62 | 62 | 0.108 |
63 | 63 | 0.142 |
64 | 64 | 0.874 |
65 | 65 | 0.279 |
66 | 66 | 0.728 |
67 | 67 | 0.734 |
68 | 68 | 0.725 |
69 | 69 | 0.256 |
7 | 7 | 0.0413 |
70 | 70 | 0.0175 |
71 | 71 | 0.0426 |
72 | 72 | 0.292 |
73 | 73 | 0.016 |
74 | 74 | 0.427 |
75 | 75 | 0.128 |
76 | 76 | 0.871 |
77 | 77 | 0.126 |
78 | 78 | 0.0644 |
79 | 79 | 0.899 |
8 | 8 | 0.277 |
80 | 80 | 0.891 |
81 | 81 | 0.28 |
82 | 82 | 0.0622 |
83 | 83 | 0.0447 |
84 | 84 | 0.695 |
85 | 85 | 0.0292 |
86 | 86 | 0.295 |
87 | 87 | 0.203 |
88 | 88 | 0.63 |
89 | 89 | 0.156 |
9 | 9 | 0.335 |
90 | 90 | 0.387 |
91 | 91 | 0.371 |
92 | 92 | 0.091 |
93 | 93 | 0.0577 |
94 | 94 | 0.643 |
95 | 95 | 0.0479 |
96 | 96 | 0.238 |
97 | 97 | 0.832 |
98 | 98 | 0.516 |
99 | 99 | 0.194 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12025
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000204 cortical mouse neuron sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000117 (CNS neuron (sensu Vertebrata))
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
0002609 (neuron of cerebral cortex)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000956 (cerebral cortex)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000203 (mouse neuron samples)
0000204 (cortical mouse neuron sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000337 (neuroblast (sensu Vertebrata))
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)