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{{f5samples
{{f5samples
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|accession_numbers=CAGE;DRX008142;DRR009014;DRZ000439;DRZ001824;DRZ011789;DRZ013174
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|fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11878-125C6
|fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11878-125C6
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg38.nobarcode.ctss.bed.gz
|id=FF:11878-125C6
|id=FF:11878-125C6
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11878
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11878
|name=CD14+ monocytes - treated with Candida, donor2
|name=CD14+ monocytes - treated with Candida, donor2
|namespace=
|namespace=
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|rna_box=125
|rna_box=125
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 79:
|rna_weight_ug=3.287565
|rna_weight_ug=3.287565
|sample_age=51
|sample_age=51
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 69: Line 92:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.30031292345946e-277!GO:0005737;cytoplasm;8.49774198750517e-123!GO:0043227;membrane-bound organelle;2.31500131072196e-112!GO:0043231;intracellular membrane-bound organelle;3.94984139852012e-112!GO:0043226;organelle;2.39267330919914e-105!GO:0043229;intracellular organelle;1.05414546010681e-104!GO:0044444;cytoplasmic part;3.21637689528008e-76!GO:0005515;protein binding;8.42389032005206e-75!GO:0044422;organelle part;3.37352164524744e-68!GO:0044446;intracellular organelle part;9.63037582032084e-67!GO:0044237;cellular metabolic process;3.34915526147784e-65!GO:0044238;primary metabolic process;1.9401616898963e-64!GO:0043170;macromolecule metabolic process;1.45828643095161e-61!GO:0032991;macromolecular complex;2.39655293812109e-58!GO:0003723;RNA binding;2.65982722504166e-53!GO:0030529;ribonucleoprotein complex;7.88751258509895e-50!GO:0044428;nuclear part;4.52707633454704e-48!GO:0005634;nucleus;8.50701662077644e-48!GO:0019538;protein metabolic process;4.78381398490702e-46!GO:0044267;cellular protein metabolic process;1.49937565930794e-42!GO:0044260;cellular macromolecule metabolic process;2.03498240134269e-42!GO:0006412;translation;8.36691562517272e-40!GO:0033036;macromolecule localization;1.41354582782441e-39!GO:0015031;protein transport;1.14257518274849e-38!GO:0045184;establishment of protein localization;1.50932802544763e-38!GO:0043233;organelle lumen;7.99889382574472e-38!GO:0031974;membrane-enclosed lumen;7.99889382574472e-38!GO:0008104;protein localization;1.34726499397356e-36!GO:0006915;apoptosis;1.6473995177305e-34!GO:0012501;programmed cell death;1.95595882415396e-34!GO:0005829;cytosol;1.11679765428288e-33!GO:0043283;biopolymer metabolic process;1.21153068847702e-33!GO:0008219;cell death;4.78591884890099e-33!GO:0016265;death;4.78591884890099e-33!GO:0010467;gene expression;1.18165751680612e-32!GO:0016071;mRNA metabolic process;2.54002449033473e-30!GO:0006396;RNA processing;2.81863443144063e-30!GO:0031090;organelle membrane;3.15038592149277e-30!GO:0009059;macromolecule biosynthetic process;5.20477480873996e-30!GO:0031981;nuclear lumen;5.40485745151813e-30!GO:0043234;protein complex;6.09838142987699e-30!GO:0016043;cellular component organization and biogenesis;3.4198176794605e-29!GO:0009058;biosynthetic process;4.76596274881818e-29!GO:0044249;cellular biosynthetic process;1.62290501785896e-28!GO:0008380;RNA splicing;9.23756710045178e-27!GO:0046907;intracellular transport;1.10070725444545e-26!GO:0006886;intracellular protein transport;7.28051488656664e-26!GO:0005840;ribosome;1.90285486974284e-25!GO:0006397;mRNA processing;3.80113758320829e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.08834818781573e-24!GO:0005739;mitochondrion;1.32472254938506e-23!GO:0003735;structural constituent of ribosome;3.22243566507091e-23!GO:0033279;ribosomal subunit;3.59626368345876e-23!GO:0031967;organelle envelope;3.88488281104893e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.37935099472824e-23!GO:0042981;regulation of apoptosis;6.46868828037407e-23!GO:0031975;envelope;6.67578963888302e-23!GO:0043067;regulation of programmed cell death;1.55223333728843e-22!GO:0008134;transcription factor binding;2.72321997347956e-22!GO:0065003;macromolecular complex assembly;5.84643575464325e-22!GO:0044445;cytosolic part;4.58139568488971e-21!GO:0005654;nucleoplasm;5.88400633486619e-21!GO:0000166;nucleotide binding;9.45767040488904e-21!GO:0005681;spliceosome;1.29153655186319e-20!GO:0051649;establishment of cellular localization;3.6733735061486e-20!GO:0051641;cellular localization;1.66584809127597e-19!GO:0007243;protein kinase cascade;2.57304214782885e-19!GO:0022607;cellular component assembly;9.00181643991534e-19!GO:0002376;immune system process;1.15960470297867e-18!GO:0048523;negative regulation of cellular process;1.64196508756134e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.17544829786806e-18!GO:0044429;mitochondrial part;4.9881314478075e-18!GO:0044451;nucleoplasm part;1.88415604106425e-17!GO:0016192;vesicle-mediated transport;6.09867297529141e-17!GO:0048770;pigment granule;6.31481627236976e-17!GO:0042470;melanosome;6.31481627236976e-17!GO:0007242;intracellular signaling cascade;1.39479952873772e-16!GO:0048519;negative regulation of biological process;1.4365671568122e-16!GO:0044265;cellular macromolecule catabolic process;3.9799878216624e-16!GO:0006512;ubiquitin cycle;4.2195738691053e-16!GO:0017111;nucleoside-triphosphatase activity;4.89902238612807e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.05086033012298e-16!GO:0016462;pyrophosphatase activity;5.05086033012298e-16!GO:0043412;biopolymer modification;5.05086033012298e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;5.65407954337831e-16!GO:0050794;regulation of cellular process;6.66179671920901e-16!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.19297875558991e-15!GO:0006119;oxidative phosphorylation;2.91602056337934e-15!GO:0043285;biopolymer catabolic process;2.91602056337934e-15!GO:0022618;protein-RNA complex assembly;4.22237338335847e-15!GO:0043069;negative regulation of programmed cell death;5.14694282002847e-15!GO:0043066;negative regulation of apoptosis;5.41898736981605e-15!GO:0032553;ribonucleotide binding;5.48330860460149e-15!GO:0032555;purine ribonucleotide binding;5.48330860460149e-15!GO:0005773;vacuole;6.34914002528304e-15!GO:0065009;regulation of a molecular function;6.65903161836136e-15!GO:0006464;protein modification process;9.04829964598313e-15!GO:0006996;organelle organization and biogenesis;2.62560656079705e-14!GO:0006955;immune response;2.77663152331789e-14!GO:0043687;post-translational protein modification;2.86342424980463e-14!GO:0017076;purine nucleotide binding;3.08777397028069e-14!GO:0016070;RNA metabolic process;4.88777820000818e-14!GO:0006366;transcription from RNA polymerase II promoter;5.07080719162068e-14!GO:0006605;protein targeting;5.57125185492092e-14!GO:0005740;mitochondrial envelope;5.7960701208016e-14!GO:0019941;modification-dependent protein catabolic process;5.96063166919669e-14!GO:0043632;modification-dependent macromolecule catabolic process;5.96063166919669e-14!GO:0006950;response to stress;6.14178412539268e-14!GO:0003712;transcription cofactor activity;7.13703176130956e-14!GO:0044257;cellular protein catabolic process;7.52431306591332e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;7.83202728212116e-14!GO:0006511;ubiquitin-dependent protein catabolic process;8.98600124104734e-14!GO:0006913;nucleocytoplasmic transport;9.63578240520043e-14!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.8942472441243e-14!GO:0009057;macromolecule catabolic process;1.19668324127563e-13!GO:0051169;nuclear transport;1.92297416534337e-13!GO:0031966;mitochondrial membrane;1.92297416534337e-13!GO:0003676;nucleic acid binding;2.18265849225043e-13!GO:0000323;lytic vacuole;2.78360883748029e-13!GO:0005764;lysosome;2.78360883748029e-13!GO:0019866;organelle inner membrane;2.8188773479245e-13!GO:0051246;regulation of protein metabolic process;2.8333311328447e-13!GO:0050789;regulation of biological process;4.78652763421572e-13!GO:0016604;nuclear body;7.77678329843233e-13!GO:0048522;positive regulation of cellular process;1.11830812300884e-12!GO:0015935;small ribosomal subunit;1.31395950548375e-12!GO:0008135;translation factor activity, nucleic acid binding;1.58716449926691e-12!GO:0030163;protein catabolic process;2.40570851886138e-12!GO:0006916;anti-apoptosis;2.40570851886138e-12!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.20575802867749e-12!GO:0065007;biological regulation;3.47505040010788e-12!GO:0044248;cellular catabolic process;3.69761472045732e-12!GO:0016874;ligase activity;5.61114322694208e-12!GO:0048518;positive regulation of biological process;6.17235645882278e-12!GO:0006793;phosphorus metabolic process;6.36920276629597e-12!GO:0006796;phosphate metabolic process;6.36920276629597e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.99500843712718e-12!GO:0006259;DNA metabolic process;8.22514175539865e-12!GO:0015934;large ribosomal subunit;9.74559762526124e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.2193891405733e-11!GO:0012505;endomembrane system;1.349399023476e-11!GO:0005768;endosome;1.43467478927963e-11!GO:0016607;nuclear speck;1.47293690866662e-11!GO:0006457;protein folding;1.54669979987959e-11!GO:0003743;translation initiation factor activity;2.77317430847986e-11!GO:0006413;translational initiation;4.25599262265922e-11!GO:0050790;regulation of catalytic activity;5.6889234277263e-11!GO:0005794;Golgi apparatus;1.07840223084989e-10!GO:0016310;phosphorylation;1.09234300823208e-10!GO:0006446;regulation of translational initiation;1.17516114427504e-10!GO:0005743;mitochondrial inner membrane;1.27050489411377e-10!GO:0005524;ATP binding;1.48860824400237e-10!GO:0006417;regulation of translation;1.6749755790132e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.84104906950755e-10!GO:0032559;adenyl ribonucleotide binding;2.14289122309312e-10!GO:0009615;response to virus;2.58776138055786e-10!GO:0051186;cofactor metabolic process;2.7998823421443e-10!GO:0031324;negative regulation of cellular metabolic process;3.57315781594584e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.75842391803095e-10!GO:0009967;positive regulation of signal transduction;6.25172442274476e-10!GO:0044455;mitochondrial membrane part;1.10243564351882e-09!GO:0030554;adenyl nucleotide binding;1.16684234933789e-09!GO:0009889;regulation of biosynthetic process;1.19211191393891e-09!GO:0051082;unfolded protein binding;1.21861083983969e-09!GO:0048468;cell development;1.27247345516111e-09!GO:0005730;nucleolus;1.50280484978712e-09!GO:0005635;nuclear envelope;1.50780508752529e-09!GO:0019829;cation-transporting ATPase activity;1.5692419577825e-09!GO:0006732;coenzyme metabolic process;2.31570502943072e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.57561132757819e-09!GO:0015986;ATP synthesis coupled proton transport;2.83237479747192e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.83237479747192e-09!GO:0031326;regulation of cellular biosynthetic process;3.49883778263352e-09!GO:0005770;late endosome;3.74718924696796e-09!GO:0043065;positive regulation of apoptosis;3.74718924696796e-09!GO:0007049;cell cycle;3.80666129032001e-09!GO:0009607;response to biotic stimulus;5.54004645050577e-09!GO:0043068;positive regulation of programmed cell death;5.62135521161144e-09!GO:0016787;hydrolase activity;6.52973744352102e-09!GO:0051170;nuclear import;6.52973744352102e-09!GO:0051726;regulation of cell cycle;7.15455468002043e-09!GO:0017038;protein import;7.17270506566105e-09!GO:0000074;regulation of progression through cell cycle;8.138727836314e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.21994910084273e-09!GO:0000375;RNA splicing, via transesterification reactions;8.21994910084273e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.21994910084273e-09!GO:0008639;small protein conjugating enzyme activity;8.84910054391118e-09!GO:0019787;small conjugating protein ligase activity;8.9411316191732e-09!GO:0009892;negative regulation of metabolic process;1.23153184936035e-08!GO:0004842;ubiquitin-protein ligase activity;1.25355097437627e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.25355097437627e-08!GO:0006164;purine nucleotide biosynthetic process;1.26324786670719e-08!GO:0006163;purine nucleotide metabolic process;1.33661110070415e-08!GO:0006606;protein import into nucleus;1.389838182012e-08!GO:0009150;purine ribonucleotide metabolic process;1.46036564288855e-08!GO:0019899;enzyme binding;1.51969413396608e-08!GO:0005783;endoplasmic reticulum;1.51969413396608e-08!GO:0003713;transcription coactivator activity;1.53040863849404e-08!GO:0009056;catabolic process;1.77525322699016e-08!GO:0042623;ATPase activity, coupled;1.78457128959679e-08!GO:0016564;transcription repressor activity;1.80841353899068e-08!GO:0016887;ATPase activity;2.40061370337462e-08!GO:0009259;ribonucleotide metabolic process;2.69319092620032e-08!GO:0006754;ATP biosynthetic process;3.55186427090483e-08!GO:0006753;nucleoside phosphate metabolic process;3.55186427090483e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.78289899655931e-08!GO:0009260;ribonucleotide biosynthetic process;4.93743571157445e-08!GO:0019222;regulation of metabolic process;5.2179751379743e-08!GO:0031965;nuclear membrane;6.09655381860581e-08!GO:0043228;non-membrane-bound organelle;6.75774221926184e-08!GO:0043232;intracellular non-membrane-bound organelle;6.75774221926184e-08!GO:0048193;Golgi vesicle transport;7.49152419730881e-08!GO:0016469;proton-transporting two-sector ATPase complex;7.50330266515485e-08!GO:0005774;vacuolar membrane;8.97887267216975e-08!GO:0005746;mitochondrial respiratory chain;1.082349406038e-07!GO:0044453;nuclear membrane part;1.0826335124579e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.14196277512605e-07!GO:0045786;negative regulation of progression through cell cycle;1.14279388802107e-07!GO:0016563;transcription activator activity;1.1973989505137e-07!GO:0016568;chromatin modification;1.21350972439106e-07!GO:0003924;GTPase activity;1.31909083840672e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.41845195463018e-07!GO:0006917;induction of apoptosis;1.43645211551063e-07!GO:0006461;protein complex assembly;1.55249264533408e-07!GO:0009966;regulation of signal transduction;1.59366014285533e-07!GO:0016881;acid-amino acid ligase activity;1.74684598522004e-07!GO:0046034;ATP metabolic process;1.82518069118239e-07!GO:0007264;small GTPase mediated signal transduction;1.94974526135005e-07!GO:0016481;negative regulation of transcription;1.99433375723583e-07!GO:0008047;enzyme activator activity;2.02149836754175e-07!GO:0004386;helicase activity;2.13139780771846e-07!GO:0012502;induction of programmed cell death;2.32003844774638e-07!GO:0008565;protein transporter activity;2.57336174924244e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.73466319980769e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.73466319980769e-07!GO:0045321;leukocyte activation;2.73791407332234e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.23700441746716e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.23700441746716e-07!GO:0005525;GTP binding;3.6544124821419e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.66055930512814e-07!GO:0051188;cofactor biosynthetic process;3.88686693281576e-07!GO:0044437;vacuolar part;4.00074903085983e-07!GO:0009108;coenzyme biosynthetic process;4.87436894515435e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.35526711466694e-07!GO:0009144;purine nucleoside triphosphate metabolic process;6.35526711466694e-07!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.6776645731566e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.19531383960016e-07!GO:0050136;NADH dehydrogenase (quinone) activity;7.27403751820853e-07!GO:0003954;NADH dehydrogenase activity;7.27403751820853e-07!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.27403751820853e-07!GO:0005765;lysosomal membrane;8.04357938162788e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.20769617109397e-07!GO:0008026;ATP-dependent helicase activity;8.31678117703705e-07!GO:0006323;DNA packaging;9.3292017499265e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.70815516834808e-07!GO:0050657;nucleic acid transport;9.70815516834808e-07!GO:0051236;establishment of RNA localization;9.70815516834808e-07!GO:0050658;RNA transport;9.70815516834808e-07!GO:0006403;RNA localization;1.22745987000488e-06!GO:0016044;membrane organization and biogenesis;1.36824623197667e-06!GO:0044432;endoplasmic reticulum part;1.43614643303081e-06!GO:0009141;nucleoside triphosphate metabolic process;1.71715323882696e-06!GO:0009055;electron carrier activity;1.93327576523406e-06!GO:0006752;group transfer coenzyme metabolic process;2.19456156499741e-06!GO:0005793;ER-Golgi intermediate compartment;2.56238723742909e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.88660699111211e-06!GO:0030097;hemopoiesis;3.3469731804434e-06!GO:0044440;endosomal part;3.41718953549886e-06!GO:0010008;endosome membrane;3.41718953549886e-06!GO:0030099;myeloid cell differentiation;3.86180452411358e-06!GO:0005643;nuclear pore;4.15044959355028e-06!GO:0022402;cell cycle process;4.63175786456815e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.0680528039505e-06!GO:0042775;organelle ATP synthesis coupled electron transport;5.17828354570556e-06!GO:0042773;ATP synthesis coupled electron transport;5.17828354570556e-06!GO:0003714;transcription corepressor activity;5.54233099160366e-06!GO:0032446;protein modification by small protein conjugation;5.67672527388946e-06!GO:0051338;regulation of transferase activity;5.68716215357728e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.73952771946263e-06!GO:0015399;primary active transmembrane transporter activity;5.73952771946263e-06!GO:0031982;vesicle;6.05800928644853e-06!GO:0032561;guanyl ribonucleotide binding;6.48688212726223e-06!GO:0019001;guanyl nucleotide binding;6.48688212726223e-06!GO:0031323;regulation of cellular metabolic process;6.86388979628773e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.28700685011446e-06!GO:0051789;response to protein stimulus;7.39407474260307e-06!GO:0006986;response to unfolded protein;7.39407474260307e-06!GO:0031980;mitochondrial lumen;7.54276192920911e-06!GO:0005759;mitochondrial matrix;7.54276192920911e-06!GO:0001816;cytokine production;7.66289674997984e-06!GO:0046649;lymphocyte activation;7.85503427699585e-06!GO:0006974;response to DNA damage stimulus;8.83377043115853e-06!GO:0030964;NADH dehydrogenase complex (quinone);9.30759264946981e-06!GO:0045271;respiratory chain complex I;9.30759264946981e-06!GO:0005747;mitochondrial respiratory chain complex I;9.30759264946981e-06!GO:0016567;protein ubiquitination;1.06473737710037e-05!GO:0009893;positive regulation of metabolic process;1.14058672717668e-05!GO:0043549;regulation of kinase activity;1.22718959002447e-05!GO:0006954;inflammatory response;1.2573589375602e-05!GO:0051028;mRNA transport;1.25883245952673e-05!GO:0051336;regulation of hydrolase activity;1.3196259248777e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.42877868556431e-05!GO:0016197;endosome transport;1.44702463712378e-05!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.61096354866323e-05!GO:0005789;endoplasmic reticulum membrane;1.82706309925491e-05!GO:0006897;endocytosis;1.90510325133165e-05!GO:0010324;membrane invagination;1.90510325133165e-05!GO:0001775;cell activation;2.12880041021076e-05!GO:0045859;regulation of protein kinase activity;2.19512299536814e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.3223404265882e-05!GO:0046983;protein dimerization activity;2.42732642600516e-05!GO:0030695;GTPase regulator activity;2.54911578472774e-05!GO:0042254;ribosome biogenesis and assembly;2.93782718811315e-05!GO:0031410;cytoplasmic vesicle;2.95015609221588e-05!GO:0003724;RNA helicase activity;3.0358217237387e-05!GO:0031902;late endosome membrane;3.33961385802411e-05!GO:0046930;pore complex;3.44652605022564e-05!GO:0051276;chromosome organization and biogenesis;3.49468984429367e-05!GO:0008632;apoptotic program;3.9404070419259e-05!GO:0005769;early endosome;4.00479423727675e-05!GO:0048475;coated membrane;4.00479423727675e-05!GO:0030117;membrane coat;4.00479423727675e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.18212195675846e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.23579055234445e-05!GO:0030120;vesicle coat;4.54764993618699e-05!GO:0030662;coated vesicle membrane;4.54764993618699e-05!GO:0004674;protein serine/threonine kinase activity;4.63148245064706e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.78995502740011e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.37089102311133e-05!GO:0002521;leukocyte differentiation;5.5368846875227e-05!GO:0031252;leading edge;5.62532221126204e-05!GO:0043566;structure-specific DNA binding;5.74365616726869e-05!GO:0046822;regulation of nucleocytoplasmic transport;5.79406189589556e-05!GO:0007050;cell cycle arrest;5.94803409375036e-05!GO:0031988;membrane-bound vesicle;6.49478334662867e-05!GO:0002520;immune system development;6.51883454477452e-05!GO:0005096;GTPase activator activity;6.61340382470571e-05!GO:0006952;defense response;6.71380237058334e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.90790875252773e-05!GO:0048534;hemopoietic or lymphoid organ development;7.84779135516075e-05!GO:0006401;RNA catabolic process;8.64002959884373e-05!GO:0043492;ATPase activity, coupled to movement of substances;8.76511775210208e-05!GO:0006281;DNA repair;8.82963294585163e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;8.82963294585163e-05!GO:0060090;molecular adaptor activity;9.61503180196079e-05!GO:0006613;cotranslational protein targeting to membrane;9.70334030147248e-05!GO:0007265;Ras protein signal transduction;9.72245940127608e-05!GO:0045941;positive regulation of transcription;9.85205343329907e-05!GO:0046519;sphingoid metabolic process;9.85205343329907e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000105081499744793!GO:0042110;T cell activation;0.000118372651251239!GO:0045893;positive regulation of transcription, DNA-dependent;0.000119227725939225!GO:0005057;receptor signaling protein activity;0.000126990573840375!GO:0051223;regulation of protein transport;0.000129583986095439!GO:0010468;regulation of gene expression;0.000134766020166981!GO:0051427;hormone receptor binding;0.000136095372526282!GO:0022890;inorganic cation transmembrane transporter activity;0.000136095372526282!GO:0006672;ceramide metabolic process;0.000136365794007946!GO:0051168;nuclear export;0.000137894428527146!GO:0045259;proton-transporting ATP synthase complex;0.000141812208306826!GO:0003697;single-stranded DNA binding;0.000148874858379419!GO:0043085;positive regulation of catalytic activity;0.000155325112965981!GO:0005083;small GTPase regulator activity;0.000155606746297465!GO:0006402;mRNA catabolic process;0.000160350578444431!GO:0065002;intracellular protein transport across a membrane;0.00016133820695386!GO:0031325;positive regulation of cellular metabolic process;0.000164580980212048!GO:0004298;threonine endopeptidase activity;0.000168855237340591!GO:0016023;cytoplasmic membrane-bound vesicle;0.000178918432754764!GO:0006818;hydrogen transport;0.000183648761922016!GO:0035257;nuclear hormone receptor binding;0.000193193509893501!GO:0009060;aerobic respiration;0.000226634255335175!GO:0045892;negative regulation of transcription, DNA-dependent;0.000229031886129785!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000234439023071832!GO:0016740;transferase activity;0.000249408116760083!GO:0051707;response to other organism;0.000252108370381177!GO:0030532;small nuclear ribonucleoprotein complex;0.000254539938300744!GO:0015992;proton transport;0.000255959844568433!GO:0005667;transcription factor complex;0.000304122926182902!GO:0007041;lysosomal transport;0.000310130551970575!GO:0007034;vacuolar transport;0.000320427209683947!GO:0045637;regulation of myeloid cell differentiation;0.000321502575497106!GO:0008186;RNA-dependent ATPase activity;0.000336218199822194!GO:0008234;cysteine-type peptidase activity;0.000337759116346906!GO:0051090;regulation of transcription factor activity;0.000358956855515783!GO:0009117;nucleotide metabolic process;0.000381340610529!GO:0030036;actin cytoskeleton organization and biogenesis;0.000382897888017176!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000397761178697709!GO:0033157;regulation of intracellular protein transport;0.000413497818752474!GO:0042306;regulation of protein import into nucleus;0.000413497818752474!GO:0002757;immune response-activating signal transduction;0.000415268044348673!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000417519717753379!GO:0005885;Arp2/3 protein complex;0.000492150796109008!GO:0000245;spliceosome assembly;0.000514177956544491!GO:0009719;response to endogenous stimulus;0.000593339349340777!GO:0045333;cellular respiration;0.000614091323708909!GO:0006919;caspase activation;0.000614984149846505!GO:0007040;lysosome organization and biogenesis;0.000657127370619929!GO:0001817;regulation of cytokine production;0.000657127370619929!GO:0005798;Golgi-associated vesicle;0.000750026428680741!GO:0002764;immune response-regulating signal transduction;0.000760469908113211!GO:0005761;mitochondrial ribosome;0.00076980215123916!GO:0000313;organellar ribosome;0.00076980215123916!GO:0003729;mRNA binding;0.000799117056375856!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000809099319837383!GO:0043281;regulation of caspase activity;0.00082497451501153!GO:0022415;viral reproductive process;0.000829475494083676!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000836373133539331!GO:0019221;cytokine and chemokine mediated signaling pathway;0.000836373133539331!GO:0002274;myeloid leukocyte activation;0.000862166242338647!GO:0008654;phospholipid biosynthetic process;0.000875523551320948!GO:0016072;rRNA metabolic process;0.000924356438155947!GO:0044431;Golgi apparatus part;0.000940801969707683!GO:0004004;ATP-dependent RNA helicase activity;0.000943388545490317!GO:0042802;identical protein binding;0.000957155700000871!GO:0005637;nuclear inner membrane;0.000963855332601448!GO:0016301;kinase activity;0.000992254587607337!GO:0043280;positive regulation of caspase activity;0.00101572212390669!GO:0006643;membrane lipid metabolic process;0.00109969937309799!GO:0007033;vacuole organization and biogenesis;0.00110511774627681!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00116555180318072!GO:0042990;regulation of transcription factor import into nucleus;0.00116555180318072!GO:0042991;transcription factor import into nucleus;0.00116555180318072!GO:0016251;general RNA polymerase II transcription factor activity;0.00119146341225992!GO:0043623;cellular protein complex assembly;0.00119796134659761!GO:0006364;rRNA processing;0.0012226625426868!GO:0006350;transcription;0.00124007438671036!GO:0043087;regulation of GTPase activity;0.00125337382890746!GO:0005070;SH3/SH2 adaptor activity;0.00139035452132369!GO:0000151;ubiquitin ligase complex;0.00139035452132369!GO:0007005;mitochondrion organization and biogenesis;0.00142251705475339!GO:0065004;protein-DNA complex assembly;0.0014373231627578!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00147373614734718!GO:0007259;JAK-STAT cascade;0.0014917486889941!GO:0009165;nucleotide biosynthetic process;0.00159690100900446!GO:0006612;protein targeting to membrane;0.00166279234344567!GO:0009611;response to wounding;0.0016868750181912!GO:0001726;ruffle;0.00169484863007079!GO:0019904;protein domain specific binding;0.00182210886135441!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00186737716993619!GO:0032940;secretion by cell;0.00194948196619464!GO:0002252;immune effector process;0.00200880017701251!GO:0033116;ER-Golgi intermediate compartment membrane;0.00207422667822122!GO:0001819;positive regulation of cytokine production;0.00220825616063581!GO:0030218;erythrocyte differentiation;0.00254982779242822!GO:0033673;negative regulation of kinase activity;0.00255770530401357!GO:0006469;negative regulation of protein kinase activity;0.00255770530401357!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00258826120822001!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00280849306440212!GO:0043433;negative regulation of transcription factor activity;0.00290787399425371!GO:0031072;heat shock protein binding;0.00303527946838159!GO:0051348;negative regulation of transferase activity;0.00316858586971286!GO:0003702;RNA polymerase II transcription factor activity;0.00320256652834142!GO:0051059;NF-kappaB binding;0.00326073161091224!GO:0030029;actin filament-based process;0.00330400992881115!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00340132693575915!GO:0051023;regulation of immunoglobulin secretion;0.00365103333725839!GO:0045994;positive regulation of translational initiation by iron;0.00365103333725839!GO:0006099;tricarboxylic acid cycle;0.00386394213112622!GO:0046356;acetyl-CoA catabolic process;0.00386394213112622!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0038890084087243!GO:0051187;cofactor catabolic process;0.00396391124958772!GO:0032386;regulation of intracellular transport;0.00407027861609104!GO:0042221;response to chemical stimulus;0.0040784886568817!GO:0004197;cysteine-type endopeptidase activity;0.00416125026798005!GO:0048487;beta-tubulin binding;0.00431680945967504!GO:0044262;cellular carbohydrate metabolic process;0.00434816226414837!GO:0045646;regulation of erythrocyte differentiation;0.00453873135983191!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00459369289588413!GO:0006468;protein amino acid phosphorylation;0.00477727608959066!GO:0002250;adaptive immune response;0.00479119848883035!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.00479119848883035!GO:0000165;MAPKKK cascade;0.00494033172702458!GO:0045454;cell redox homeostasis;0.00514924894743494!GO:0000082;G1/S transition of mitotic cell cycle;0.00529354269067964!GO:0016363;nuclear matrix;0.00547620106679193!GO:0005741;mitochondrial outer membrane;0.00547620106679193!GO:0031901;early endosome membrane;0.005483752037743!GO:0046966;thyroid hormone receptor binding;0.00557612658133696!GO:0050900;leukocyte migration;0.00560800033141081!GO:0030149;sphingolipid catabolic process;0.00590031662482168!GO:0051098;regulation of binding;0.00590243035541326!GO:0018193;peptidyl-amino acid modification;0.00600366852472395!GO:0002697;regulation of immune effector process;0.00608565370937114!GO:0050851;antigen receptor-mediated signaling pathway;0.00611932779549364!GO:0005099;Ras GTPase activator activity;0.00614344729007572!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0061703366023866!GO:0006611;protein export from nucleus;0.00630862717542699!GO:0006352;transcription initiation;0.00649520012258818!GO:0008383;manganese superoxide dismutase activity;0.00681458517190649!GO:0001315;age-dependent response to reactive oxygen species;0.00681458517190649!GO:0006333;chromatin assembly or disassembly;0.00690858442401503!GO:0002573;myeloid leukocyte differentiation;0.00696158014173226!GO:0019377;glycolipid catabolic process;0.00737741620568584!GO:0051345;positive regulation of hydrolase activity;0.0075523368964168!GO:0006091;generation of precursor metabolites and energy;0.00761283719554503!GO:0002684;positive regulation of immune system process;0.00770864298533923!GO:0000785;chromatin;0.00783592519529912!GO:0045639;positive regulation of myeloid cell differentiation;0.00892761966933258!GO:0032943;mononuclear cell proliferation;0.00895790674569983!GO:0046651;lymphocyte proliferation;0.00895790674569983!GO:0043021;ribonucleoprotein binding;0.00910061097953874!GO:0006607;NLS-bearing substrate import into nucleus;0.00912056078032756!GO:0042113;B cell activation;0.0091808967318819!GO:0000278;mitotic cell cycle;0.0092863051711321!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00929347232169253!GO:0004812;aminoacyl-tRNA ligase activity;0.00929347232169253!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00929347232169253!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00929347232169253!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00929347232169253!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00929347232169253!GO:0006084;acetyl-CoA metabolic process;0.00940304550174355!GO:0043621;protein self-association;0.00958439639597059!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.00964392008002869!GO:0002819;regulation of adaptive immune response;0.00964392008002869!GO:0031625;ubiquitin protein ligase binding;0.00964392008002869!GO:0005813;centrosome;0.00965983283281891!GO:0016791;phosphoric monoester hydrolase activity;0.00965983283281891!GO:0004185;serine carboxypeptidase activity;0.00967970785238213!GO:0030658;transport vesicle membrane;0.00968540055964153!GO:0046479;glycosphingolipid catabolic process;0.0101793590424243!GO:0030041;actin filament polymerization;0.0103328993079558!GO:0050778;positive regulation of immune response;0.0103598196790938!GO:0006891;intra-Golgi vesicle-mediated transport;0.0103814703908857!GO:0016779;nucleotidyltransferase activity;0.0105421763411149!GO:0032318;regulation of Ras GTPase activity;0.0105777069428451!GO:0000139;Golgi membrane;0.0109280270625999!GO:0048872;homeostasis of number of cells;0.0109456664531965!GO:0033549;MAP kinase phosphatase activity;0.0112666681661739!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0112666681661739!GO:0051049;regulation of transport;0.0113184417571558!GO:0009109;coenzyme catabolic process;0.0113702131266881!GO:0004860;protein kinase inhibitor activity;0.0114831625940486!GO:0002682;regulation of immune system process;0.0114971744617944!GO:0019079;viral genome replication;0.0116455399175299!GO:0051092;activation of NF-kappaB transcription factor;0.0117527603639048!GO:0048500;signal recognition particle;0.0118590698198685!GO:0002444;myeloid leukocyte mediated immunity;0.0119775187884577!GO:0030098;lymphocyte differentiation;0.0120971466213043!GO:0008283;cell proliferation;0.0122487690199896!GO:0005152;interleukin-1 receptor antagonist activity;0.0122645475309156!GO:0030353;fibroblast growth factor receptor antagonist activity;0.0122645475309156!GO:0051051;negative regulation of transport;0.0131847336517639!GO:0030518;steroid hormone receptor signaling pathway;0.0132420725517607!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0132952842978025!GO:0019882;antigen processing and presentation;0.0134162898225762!GO:0031968;organelle outer membrane;0.0134316179760169!GO:0008139;nuclear localization sequence binding;0.0135690256970302!GO:0032763;regulation of mast cell cytokine production;0.0138007396300525!GO:0032762;mast cell cytokine production;0.0138007396300525!GO:0030503;regulation of cell redox homeostasis;0.0138814302805613!GO:0019220;regulation of phosphate metabolic process;0.0140650174206141!GO:0051174;regulation of phosphorus metabolic process;0.0140650174206141!GO:0043038;amino acid activation;0.0142073845777662!GO:0006418;tRNA aminoacylation for protein translation;0.0142073845777662!GO:0043039;tRNA aminoacylation;0.0142073845777662!GO:0006399;tRNA metabolic process;0.0142999705380769!GO:0003690;double-stranded DNA binding;0.0143301150890471!GO:0030258;lipid modification;0.0143849073383463!GO:0033367;protein localization in mast cell secretory granule;0.0144789797239975!GO:0033365;protein localization in organelle;0.0144789797239975!GO:0033371;T cell secretory granule organization and biogenesis;0.0144789797239975!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0144789797239975!GO:0033375;protease localization in T cell secretory granule;0.0144789797239975!GO:0042629;mast cell granule;0.0144789797239975!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0144789797239975!GO:0033364;mast cell secretory granule organization and biogenesis;0.0144789797239975!GO:0033380;granzyme B localization in T cell secretory granule;0.0144789797239975!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0144789797239975!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0144789797239975!GO:0033368;protease localization in mast cell secretory granule;0.0144789797239975!GO:0033366;protein localization in secretory granule;0.0144789797239975!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0144789797239975!GO:0033374;protein localization in T cell secretory granule;0.0144789797239975!GO:0019210;kinase inhibitor activity;0.0145920337868923!GO:0000209;protein polyubiquitination;0.0146745269257702!GO:0019867;outer membrane;0.0147811624083847!GO:0002443;leukocyte mediated immunity;0.0148973475681009!GO:0002440;production of molecular mediator of immune response;0.0148978473098411!GO:0006665;sphingolipid metabolic process;0.0149508316053368!GO:0030127;COPII vesicle coat;0.0149919995185484!GO:0012507;ER to Golgi transport vesicle membrane;0.0149919995185484!GO:0046467;membrane lipid biosynthetic process;0.0152296404353398!GO:0002237;response to molecule of bacterial origin;0.0154080379297229!GO:0000339;RNA cap binding;0.0156424556985779!GO:0045746;negative regulation of Notch signaling pathway;0.0156676029432001!GO:0030660;Golgi-associated vesicle membrane;0.0157253347171859!GO:0043300;regulation of leukocyte degranulation;0.0157367749634211!GO:0008286;insulin receptor signaling pathway;0.0159132105727544!GO:0043407;negative regulation of MAP kinase activity;0.0159212582338715!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0164322043286875!GO:0003725;double-stranded RNA binding;0.0166792783847433!GO:0048146;positive regulation of fibroblast proliferation;0.0166949255719493!GO:0030867;rough endoplasmic reticulum membrane;0.0173292683485983!GO:0030521;androgen receptor signaling pathway;0.0174370473878626!GO:0051347;positive regulation of transferase activity;0.0175642112278455!GO:0008333;endosome to lysosome transport;0.0175809977030476!GO:0019901;protein kinase binding;0.0176249139641527!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0176903875759186!GO:0045047;protein targeting to ER;0.0176903875759186!GO:0000118;histone deacetylase complex;0.0177413178318924!GO:0051329;interphase of mitotic cell cycle;0.0178702355154223!GO:0019058;viral infectious cycle;0.0178702355154223!GO:0051252;regulation of RNA metabolic process;0.0178702355154223!GO:0045792;negative regulation of cell size;0.0191530944422847!GO:0017091;AU-rich element binding;0.01922522823442!GO:0050779;RNA destabilization;0.01922522823442!GO:0000289;poly(A) tail shortening;0.01922522823442!GO:0043488;regulation of mRNA stability;0.0192413588795745!GO:0043487;regulation of RNA stability;0.0192413588795745!GO:0030027;lamellipodium;0.0196264027472826!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0197770228652854!GO:0042613;MHC class II protein complex;0.0200848678626149!GO:0051325;interphase;0.0201785858713499!GO:0043022;ribosome binding;0.0202360721986659!GO:0005048;signal sequence binding;0.0204407670391491!GO:0002467;germinal center formation;0.0205154436881137!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0205506587797476!GO:0051247;positive regulation of protein metabolic process;0.0205506587797476!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0207777574539812!GO:0042108;positive regulation of cytokine biosynthetic process;0.0209170935371091!GO:0030134;ER to Golgi transport vesicle;0.0211090150185076!GO:0045576;mast cell activation;0.0211090150185076!GO:0030217;T cell differentiation;0.0214377193630995!GO:0051091;positive regulation of transcription factor activity;0.0215578142565695!GO:0008637;apoptotic mitochondrial changes;0.0217394880131868!GO:0005815;microtubule organizing center;0.0219906755893857!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0220065773174607!GO:0045449;regulation of transcription;0.0224039729695474!GO:0042107;cytokine metabolic process;0.0224621657664322!GO:0030308;negative regulation of cell growth;0.0227825813909566!GO:0008312;7S RNA binding;0.0228264629684699!GO:0001776;leukocyte homeostasis;0.023093259371485!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0235788785669982!GO:0006650;glycerophospholipid metabolic process;0.023743408410231!GO:0050776;regulation of immune response;0.0238170118128327!GO:0048144;fibroblast proliferation;0.0238170118128327!GO:0048145;regulation of fibroblast proliferation;0.0238170118128327!GO:0006414;translational elongation;0.0243811907571884!GO:0042992;negative regulation of transcription factor import into nucleus;0.0244125520670022!GO:0042308;negative regulation of protein import into nucleus;0.0244125520670022!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0248957059531143!GO:0009891;positive regulation of biosynthetic process;0.0249579133806404!GO:0006749;glutathione metabolic process;0.0250327213130091!GO:0005905;coated pit;0.0251024927071696!GO:0051251;positive regulation of lymphocyte activation;0.0252187192580733!GO:0042348;NF-kappaB import into nucleus;0.0254798089021261!GO:0042345;regulation of NF-kappaB import into nucleus;0.0254798089021261!GO:0031327;negative regulation of cellular biosynthetic process;0.025485346509389!GO:0005484;SNAP receptor activity;0.025485346509389!GO:0009890;negative regulation of biosynthetic process;0.0257518639398278!GO:0003727;single-stranded RNA binding;0.0257518639398278!GO:0030118;clathrin coat;0.0257518639398278!GO:0008361;regulation of cell size;0.0257518639398278!GO:0015036;disulfide oxidoreductase activity;0.0258074076542122!GO:0006351;transcription, DNA-dependent;0.0258291989166899!GO:0042092;T-helper 2 type immune response;0.0259504377022397!GO:0006595;polyamine metabolic process;0.0262960788151922!GO:0048471;perinuclear region of cytoplasm;0.026660735877152!GO:0019371;cyclooxygenase pathway;0.026660735877152!GO:0043299;leukocyte degranulation;0.0267279160818312!GO:0017166;vinculin binding;0.0272991342758789!GO:0042611;MHC protein complex;0.02735614652658!GO:0006458;'de novo' protein folding;0.02735614652658!GO:0051084;'de novo' posttranslational protein folding;0.02735614652658!GO:0002699;positive regulation of immune effector process;0.0273589517128634!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0274123203789788!GO:0032774;RNA biosynthetic process;0.0276651239530239!GO:0042098;T cell proliferation;0.0278266194845152!GO:0000287;magnesium ion binding;0.0278839855644052!GO:0004428;inositol or phosphatidylinositol kinase activity;0.028328777218534!GO:0002824;positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.028676145031158!GO:0002821;positive regulation of adaptive immune response;0.028676145031158!GO:0006644;phospholipid metabolic process;0.029034390620441!GO:0005694;chromosome;0.0295956545927919!GO:0002718;regulation of cytokine production during immune response;0.0297587227841944!GO:0002367;cytokine production during immune response;0.0297587227841944!GO:0002700;regulation of production of molecular mediator of immune response;0.0297587227841944!GO:0002263;cell activation during immune response;0.0297587227841944!GO:0042093;T-helper cell differentiation;0.0297587227841944!GO:0002366;leukocyte activation during immune response;0.0297587227841944!GO:0002293;alpha-beta T cell differentiation during immune response;0.0297587227841944!GO:0002294;CD4-positive, alpha-beta T cell differentiation during immune response;0.0297587227841944!GO:0002285;lymphocyte activation during immune response;0.0297587227841944!GO:0002292;T cell differentiation during immune response;0.0297587227841944!GO:0002286;T cell activation during immune response;0.0297587227841944!GO:0046578;regulation of Ras protein signal transduction;0.029777393782565!GO:0015923;mannosidase activity;0.0299556743913542!GO:0046631;alpha-beta T cell activation;0.0299556743913542!GO:0051101;regulation of DNA binding;0.0300585177861576!GO:0045045;secretory pathway;0.0301765628797449!GO:0004177;aminopeptidase activity;0.030351436747034!GO:0051050;positive regulation of transport;0.0304438225887692!GO:0030137;COPI-coated vesicle;0.0312812718315005!GO:0005149;interleukin-1 receptor binding;0.0312833863604806!GO:0030384;phosphoinositide metabolic process;0.0317209957773484!GO:0051052;regulation of DNA metabolic process;0.0318404241133514!GO:0008629;induction of apoptosis by intracellular signals;0.0321200476527578!GO:0004722;protein serine/threonine phosphatase activity;0.0322245655696249!GO:0030100;regulation of endocytosis;0.0326558951357322!GO:0033674;positive regulation of kinase activity;0.0327875604353045!GO:0050811;GABA receptor binding;0.032803336789925!GO:0030176;integral to endoplasmic reticulum membrane;0.033323896064519!GO:0030377;U-plasminogen activator receptor activity;0.0335594982095943!GO:0050865;regulation of cell activation;0.0340266888360678!GO:0019843;rRNA binding;0.0342939983614088!GO:0006689;ganglioside catabolic process;0.0343976656398244!GO:0042089;cytokine biosynthetic process;0.0348123263043933!GO:0042832;defense response to protozoan;0.0350292443855902!GO:0042035;regulation of cytokine biosynthetic process;0.0350498889914025!GO:0046823;negative regulation of nucleocytoplasmic transport;0.03507626810147!GO:0035035;histone acetyltransferase binding;0.0353228653513701!GO:0031647;regulation of protein stability;0.03608455430637!GO:0030155;regulation of cell adhesion;0.03608455430637!GO:0005669;transcription factor TFIID complex;0.0361963315663998!GO:0044255;cellular lipid metabolic process;0.0361963315663998!GO:0007162;negative regulation of cell adhesion;0.0363200822512943!GO:0000096;sulfur amino acid metabolic process;0.0364112148991366!GO:0001562;response to protozoan;0.0366959701665383!GO:0032760;positive regulation of tumor necrosis factor production;0.0370677507194129!GO:0043086;negative regulation of catalytic activity;0.0371147037568162!GO:0015631;tubulin binding;0.0373805748533335!GO:0048002;antigen processing and presentation of peptide antigen;0.0373805748533335!GO:0042088;T-helper 1 type immune response;0.0376792661453929!GO:0007165;signal transduction;0.0377623246723785!GO:0050727;regulation of inflammatory response;0.0377623246723785!GO:0031347;regulation of defense response;0.0377623246723785!GO:0030663;COPI coated vesicle membrane;0.0379567213171574!GO:0030126;COPI vesicle coat;0.0379567213171574!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0380119845423423!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0380119845423423!GO:0051224;negative regulation of protein transport;0.0392247147330631!GO:0008624;induction of apoptosis by extracellular signals;0.0394272412343133!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0394769575643356!GO:0051056;regulation of small GTPase mediated signal transduction;0.0395177898447559!GO:0043304;regulation of mast cell degranulation;0.0396471733844465!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0396471733844465!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0396471733844465!GO:0009126;purine nucleoside monophosphate metabolic process;0.0396471733844465!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0396471733844465!GO:0030595;leukocyte chemotaxis;0.0401293160125103!GO:0050870;positive regulation of T cell activation;0.0405310499648968!GO:0000738;DNA catabolic process, exonucleolytic;0.0405436002446325!GO:0045936;negative regulation of phosphate metabolic process;0.0407414410775247!GO:0006376;mRNA splice site selection;0.0410506214110501!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0410506214110501!GO:0030522;intracellular receptor-mediated signaling pathway;0.0410506214110501!GO:0051881;regulation of mitochondrial membrane potential;0.0416921317057636!GO:0006338;chromatin remodeling;0.0417851601969201!GO:0004563;beta-N-acetylhexosaminidase activity;0.0417952521127801!GO:0030693;caspase activity;0.0424263892938555!GO:0045089;positive regulation of innate immune response;0.0427651707739893!GO:0045088;regulation of innate immune response;0.0427651707739893!GO:0006979;response to oxidative stress;0.0428183464531274!GO:0002224;toll-like receptor signaling pathway;0.0428183464531274!GO:0002221;pattern recognition receptor signaling pathway;0.0428183464531274!GO:0004672;protein kinase activity;0.0430185092297911!GO:0019883;antigen processing and presentation of endogenous antigen;0.0430932939617298!GO:0045603;positive regulation of endothelial cell differentiation;0.0433502229594895!GO:0046466;membrane lipid catabolic process;0.0437101379667618!GO:0042326;negative regulation of phosphorylation;0.0438839591311096!GO:0030133;transport vesicle;0.0438839591311096!GO:0046982;protein heterodimerization activity;0.0438839591311096!GO:0042325;regulation of phosphorylation;0.0439941999870344!GO:0005350;pyrimidine transmembrane transporter activity;0.0439941999870344!GO:0015855;pyrimidine transport;0.0439941999870344!GO:0015288;porin activity;0.0439941999870344!GO:0045727;positive regulation of translation;0.0440511706660874!GO:0006935;chemotaxis;0.0440511706660874!GO:0042330;taxis;0.0440511706660874!GO:0006260;DNA replication;0.0442805144654005!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0445369296018915!GO:0042347;negative regulation of NF-kappaB import into nucleus;0.0452327278516026!GO:0042127;regulation of cell proliferation;0.0463316626676928!GO:0006914;autophagy;0.0463716310186871!GO:0006984;ER-nuclear signaling pathway;0.0465377002845446!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0466120641061577!GO:0006405;RNA export from nucleus;0.0467235184136673!GO:0008320;protein transmembrane transporter activity;0.047457872870302!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0477105801060152!GO:0051249;regulation of lymphocyte activation;0.0477453361283093!GO:0051900;regulation of mitochondrial depolarization;0.048168125093639!GO:0017148;negative regulation of translation;0.048874598476362!GO:0045860;positive regulation of protein kinase activity;0.0497905338158106
|sample_id=11878
|sample_id=11878
|sample_note=
|sample_note=
Line 76: Line 100:
|sample_tissue=
|sample_tissue=
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11878-125C6;search_select_hide=table117:FF:11878-125C6
}}
}}

Latest revision as of 18:25, 4 June 2020

Name:CD14+ monocytes - treated with Candida, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13488
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age51
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD4-9
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005082
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13488 CAGE DRX008142 DRR009014
Accession ID Hg19

Library idBAMCTSS
CNhs13488 DRZ000439 DRZ001824
Accession ID Hg38

Library idBAMCTSS
CNhs13488 DRZ011789 DRZ013174
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.973
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.132
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.626
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0686
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.216
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.71
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.216
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.942
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.688
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.504
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.49
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.688
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.27
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.468
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.451
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.36
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.249
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.415
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.925
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.468
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.922
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.688
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.689
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.909
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.742
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.36
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.628
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.642
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.554
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.557
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.705
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.782
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.36
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.659
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.216
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.626
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.216
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.36
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.468
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.742
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.36
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.175
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.216
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.36
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.216
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13488

Jaspar motifP-value
MA0002.24.42545e-8
MA0003.10.94
MA0004.10.0712
MA0006.10.63
MA0007.10.908
MA0009.10.437
MA0014.10.805
MA0017.10.26
MA0018.20.0135
MA0019.10.567
MA0024.10.00545
MA0025.16.34523e-4
MA0027.10.956
MA0028.10.101
MA0029.10.116
MA0030.10.153
MA0031.10.356
MA0035.20.285
MA0038.10.695
MA0039.20.716
MA0040.10.79
MA0041.10.775
MA0042.10.433
MA0043.15.52544e-9
MA0046.10.012
MA0047.20.314
MA0048.10.53
MA0050.15.1182e-8
MA0051.10.00244
MA0052.17.75486e-4
MA0055.10.374
MA0057.10.304
MA0058.10.0119
MA0059.10.0489
MA0060.11.26584e-6
MA0061.11.2398e-15
MA0062.20.699
MA0065.20.0371
MA0066.10.0546
MA0067.12.08636e-7
MA0068.10.539
MA0069.10.837
MA0070.10.0226
MA0071.10.339
MA0072.10.473
MA0073.10.462
MA0074.10.106
MA0076.10.117
MA0077.10.314
MA0078.10.442
MA0079.20.133
MA0080.24.96701e-11
MA0081.15.44203e-4
MA0083.10.898
MA0084.10.578
MA0087.10.779
MA0088.10.587
MA0090.10.522
MA0091.10.762
MA0092.10.45
MA0093.10.0848
MA0099.24.43934e-46
MA0100.10.776
MA0101.15.55384e-17
MA0102.22.09136e-8
MA0103.10.0701
MA0104.20.0519
MA0105.15.20781e-22
MA0106.10.815
MA0107.13.78528e-20
MA0108.20.741
MA0111.10.542
MA0112.23.22518e-4
MA0113.10.829
MA0114.10.274
MA0115.10.549
MA0116.17.35272e-4
MA0117.10.0245
MA0119.10.168
MA0122.10.658
MA0124.10.247
MA0125.10.186
MA0131.10.421
MA0135.10.283
MA0136.13.95279e-12
MA0137.20.258
MA0138.20.32
MA0139.10.851
MA0140.10.436
MA0141.10.156
MA0142.10.525
MA0143.10.929
MA0144.10.146
MA0145.10.716
MA0146.10.649
MA0147.10.112
MA0148.10.578
MA0149.10.201
MA0150.14.07598e-22
MA0152.11
MA0153.10.00318
MA0154.11.47969e-4
MA0155.10.863
MA0156.13.72868e-8
MA0157.10.915
MA0159.10.0407
MA0160.10.0384
MA0162.10.597
MA0163.12.01423e-7
MA0164.10.609
MA0258.10.0168
MA0259.10.882



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13488

Novel motifP-value
10.117
100.018
1000.896
1010.828
1020.899
1030.331
1040.538
1050.0689
1060.00123
1070.389
1080.633
1090.431
110.225
1100.158
1110.0987
1120.373
1130.51
1140.0357
1150.197
1160.987
1170.0746
1180.228
1190.137
120.307
1200.944
1210.503
1220.563
1230.359
1240.616
1250.335
1260.27
1270.592
1280.0493
1290.471
130.0834
1300.245
1310.969
1320.0392
1330.67
1340.585
1350.932
1360.941
1370.0363
1380.373
1390.0824
140.549
1400.195
1410.306
1420.01
1430.0213
1440.626
1450.455
1460.817
1470.678
1480.0195
1490.885
150.198
1500.353
1510.528
1520.433
1530.615
1540.657
1550.989
1560.764
1570.403
1580.0179
1590.305
160.409
1600.434
1610.444
1620.189
1630.0932
1640.113
1650.326
1660.642
1670.147
1680.169
1690.0324
170.262
180.103
190.57
20.376
200.191
210.742
220.41
230.0667
240.445
250.498
260.075
270.448
280.436
290.259
30.182
300.428
310.773
320.373
330.285
340.844
350.106
360.0561
370.0767
380.359
390.911
40.837
400.181
410.0125
420.39
430.0254
440.5
450.852
460.229
470.678
480.591
490.12
50.338
500.972
510.588
520.458
530.623
540.503
550.613
560.683
570.839
580.199
590.333
60.836
600.0787
610.621
620.124
630.616
640.435
650.269
660.305
670.482
680.803
690.447
70.255
700.0819
710.0297
720.166
730.204
740.0485
750.153
760.104
770.707
780.116
790.602
80.415
800.251
810.354
820.306
830.00723
840.109
850.054
860.0474
870.655
880.786
890.311
90.483
900.163
910.316
920.37
930.414
940.0982
950.502
960.482
970.553
980.165
990.0271



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13488


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000635 (Candida treatment sample)
0011104 (human CD14-positive monocytes - treated with Candida sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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