FF:11290-117A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005587 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005587 | ||
|accession_numbers=CAGE;DRX008507;DRR009379;DRZ000804;DRZ002189;DRZ012154;DRZ013539 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037063;DRR041429;DRZ007071 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11290-117A3 | |id=FF:11290-117A3 | ||
|is_a=CL:0002594;;EFO:0002091;;FF: | |is_a=CL:0002594;;EFO:0002091;;FF:0000167;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs11091 | |||
|library_id_phase_based=2:CNhs11091 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11290 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTCCGC.11290 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11290 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTCCGC.11290 | |||
|name=Smooth Muscle Cells - Umbilical Artery, donor1 | |name=Smooth Muscle Cells - Umbilical Artery, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11091,LSID724,release008,COMPLETED | |profile_hcage=CNhs11091,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.232111120828718,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00539305989481578,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0013167699800453,0,0,0,0,0,0,0,0,0.015901614568523,0,0,0,0,0,0,0,-0.0167590898798905,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0709309662763729,0,0,0,-0.0584468268118252,0.122640504045912,0,0.206483466020148,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.119326798093736,0.27354630446655,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA252-R10n | |rna_catalog_number=CA252-R10n | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117A3 | |rna_tube_id=117A3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.GTCCGC | |||
|sample_age=neonatal | |sample_age=neonatal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.26364071077996e-215!GO:0005737;cytoplasm;2.66632768498201e-205!GO:0043226;organelle;3.74722840873731e-164!GO:0043229;intracellular organelle;7.26537157726128e-164!GO:0043231;intracellular membrane-bound organelle;7.94095949308282e-159!GO:0043227;membrane-bound organelle;1.56788114238326e-158!GO:0044444;cytoplasmic part;2.0313200378766e-147!GO:0044422;organelle part;5.77677554386867e-131!GO:0044446;intracellular organelle part;1.54905791875574e-129!GO:0032991;macromolecular complex;1.60093284062217e-91!GO:0005515;protein binding;2.01766394311293e-81!GO:0030529;ribonucleoprotein complex;7.7862881486575e-80!GO:0044238;primary metabolic process;2.81345785127583e-76!GO:0044237;cellular metabolic process;4.56170477030164e-75!GO:0005739;mitochondrion;5.1974042773551e-69!GO:0043170;macromolecule metabolic process;1.18340519074558e-67!GO:0043233;organelle lumen;5.91527861512215e-66!GO:0031974;membrane-enclosed lumen;5.91527861512215e-66!GO:0044428;nuclear part;1.24927965323841e-56!GO:0031090;organelle membrane;1.09174046302127e-55!GO:0019538;protein metabolic process;1.92218106488164e-55!GO:0003723;RNA binding;2.02973621416441e-55!GO:0005840;ribosome;4.45483123304457e-52!GO:0006412;translation;1.99433749338126e-50!GO:0044260;cellular macromolecule metabolic process;5.04100753020472e-50!GO:0044267;cellular protein metabolic process;2.46277710189924e-49!GO:0044429;mitochondrial part;4.9977501249809e-48!GO:0009058;biosynthetic process;1.09944598260263e-47!GO:0005634;nucleus;1.43432478538798e-46!GO:0016043;cellular component organization and biogenesis;2.90068509551132e-46!GO:0003735;structural constituent of ribosome;3.41297738815147e-46!GO:0043234;protein complex;4.06277046458089e-46!GO:0015031;protein transport;1.31470912885291e-44!GO:0044249;cellular biosynthetic process;3.63115179873789e-43!GO:0009059;macromolecule biosynthetic process;3.8395838475199e-43!GO:0033036;macromolecule localization;9.06867247025584e-43!GO:0005829;cytosol;4.32985747209637e-42!GO:0045184;establishment of protein localization;7.26121900454907e-41!GO:0008104;protein localization;1.67521938522349e-40!GO:0031967;organelle envelope;1.84802806272999e-40!GO:0031975;envelope;4.42869318674046e-40!GO:0033279;ribosomal subunit;4.867809970321e-39!GO:0006396;RNA processing;1.84559256219648e-38!GO:0031981;nuclear lumen;6.93643310023454e-36!GO:0046907;intracellular transport;3.37056389504072e-35!GO:0005740;mitochondrial envelope;1.59468104244278e-32!GO:0043283;biopolymer metabolic process;1.21054206062146e-31!GO:0031966;mitochondrial membrane;1.32562422194803e-30!GO:0016071;mRNA metabolic process;6.608603122367e-29!GO:0006886;intracellular protein transport;7.23429761300563e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.98902667423655e-29!GO:0019866;organelle inner membrane;1.35157156529767e-28!GO:0005743;mitochondrial inner membrane;1.57827166587541e-27!GO:0006996;organelle organization and biogenesis;2.40246910964853e-27!GO:0008380;RNA splicing;4.15359674337061e-27!GO:0043228;non-membrane-bound organelle;4.15359674337061e-27!GO:0043232;intracellular non-membrane-bound organelle;4.15359674337061e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.54696269883213e-26!GO:0010467;gene expression;2.10165942838608e-26!GO:0065003;macromolecular complex assembly;4.86543671600644e-26!GO:0006397;mRNA processing;1.31273910454517e-25!GO:0044445;cytosolic part;8.53751009342634e-24!GO:0005783;endoplasmic reticulum;1.04092791851121e-23!GO:0006119;oxidative phosphorylation;7.45745979738308e-23!GO:0012505;endomembrane system;1.10908247361504e-22!GO:0051649;establishment of cellular localization;1.19328594357183e-22!GO:0022607;cellular component assembly;1.51145293975499e-22!GO:0051641;cellular localization;1.71789141956328e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.46301000892452e-22!GO:0044455;mitochondrial membrane part;8.28899837335968e-22!GO:0005654;nucleoplasm;2.42769240420744e-21!GO:0015934;large ribosomal subunit;4.49549108676996e-21!GO:0006457;protein folding;1.12470140934384e-20!GO:0005681;spliceosome;2.23871878630377e-20!GO:0000166;nucleotide binding;4.17235539496919e-20!GO:0005794;Golgi apparatus;2.41115740643508e-19!GO:0016462;pyrophosphatase activity;3.34961662163064e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.57237490230894e-19!GO:0044432;endoplasmic reticulum part;3.57237490230894e-19!GO:0031980;mitochondrial lumen;4.17215511822201e-19!GO:0005759;mitochondrial matrix;4.17215511822201e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;5.06067761972191e-19!GO:0015935;small ribosomal subunit;6.76671497012088e-19!GO:0017111;nucleoside-triphosphatase activity;2.05641356694306e-18!GO:0005746;mitochondrial respiratory chain;6.74315885240047e-18!GO:0044451;nucleoplasm part;1.35171082486475e-17!GO:0016874;ligase activity;2.74933272726297e-17!GO:0048770;pigment granule;3.2007313306133e-17!GO:0042470;melanosome;3.2007313306133e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.159536238049e-16!GO:0051186;cofactor metabolic process;3.71421964799447e-16!GO:0006259;DNA metabolic process;6.44443428429728e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.17022662500767e-15!GO:0005730;nucleolus;2.20116523773291e-15!GO:0043412;biopolymer modification;2.39935715129868e-15!GO:0022618;protein-RNA complex assembly;2.43977926390792e-15!GO:0048193;Golgi vesicle transport;3.06197888215689e-15!GO:0006512;ubiquitin cycle;3.10022167246664e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.12984097705441e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.46543388154725e-15!GO:0003954;NADH dehydrogenase activity;4.46543388154725e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.46543388154725e-15!GO:0051082;unfolded protein binding;5.535948156751e-15!GO:0044265;cellular macromolecule catabolic process;5.76801591837042e-15!GO:0016192;vesicle-mediated transport;7.45799957158865e-15!GO:0017076;purine nucleotide binding;7.68286716679825e-15!GO:0032553;ribonucleotide binding;7.83482547078501e-15!GO:0032555;purine ribonucleotide binding;7.83482547078501e-15!GO:0008134;transcription factor binding;1.63900181973696e-14!GO:0009057;macromolecule catabolic process;1.64846575488799e-14!GO:0043285;biopolymer catabolic process;2.14706642601068e-14!GO:0006464;protein modification process;2.77384189459331e-14!GO:0006605;protein targeting;2.80999487960638e-14!GO:0044248;cellular catabolic process;4.59984816481382e-14!GO:0005761;mitochondrial ribosome;4.88771877259911e-14!GO:0000313;organellar ribosome;4.88771877259911e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.03925016821599e-14!GO:0008135;translation factor activity, nucleic acid binding;5.03925016821599e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.62114943023027e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.12492082586073e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.58672700543068e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.7843919997597e-13!GO:0042773;ATP synthesis coupled electron transport;1.7843919997597e-13!GO:0019941;modification-dependent protein catabolic process;1.92973682586736e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.92973682586736e-13!GO:0044257;cellular protein catabolic process;2.37630517139234e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.53699338759657e-13!GO:0045271;respiratory chain complex I;2.53699338759657e-13!GO:0005747;mitochondrial respiratory chain complex I;2.53699338759657e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.71412879927063e-13!GO:0005789;endoplasmic reticulum membrane;3.97246533198575e-13!GO:0030163;protein catabolic process;4.94168102675192e-13!GO:0006732;coenzyme metabolic process;4.97686375899573e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.17534304925286e-13!GO:0007049;cell cycle;1.00218680024475e-12!GO:0009055;electron carrier activity;1.14160114597954e-12!GO:0005524;ATP binding;9.15067245323651e-12!GO:0042254;ribosome biogenesis and assembly;9.50422975875849e-12!GO:0032559;adenyl ribonucleotide binding;1.77056161288935e-11!GO:0030554;adenyl nucleotide binding;2.32897425147163e-11!GO:0009259;ribonucleotide metabolic process;2.45415169449122e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.13374608647198e-11!GO:0000375;RNA splicing, via transesterification reactions;3.13374608647198e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.13374608647198e-11!GO:0005793;ER-Golgi intermediate compartment;3.2739414837088e-11!GO:0043687;post-translational protein modification;3.36103038524467e-11!GO:0012501;programmed cell death;6.08419285673063e-11!GO:0006163;purine nucleotide metabolic process;6.54120661375936e-11!GO:0009150;purine ribonucleotide metabolic process;1.01776909214395e-10!GO:0006915;apoptosis;1.16308522196984e-10!GO:0003743;translation initiation factor activity;1.26128433810054e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.81831905558583e-10!GO:0006164;purine nucleotide biosynthetic process;3.95704406414115e-10!GO:0009260;ribonucleotide biosynthetic process;5.04812864049909e-10!GO:0009152;purine ribonucleotide biosynthetic process;6.01151963408221e-10!GO:0044431;Golgi apparatus part;7.45253727028052e-10!GO:0022402;cell cycle process;9.15459793477876e-10!GO:0019787;small conjugating protein ligase activity;9.59089081690495e-10!GO:0006413;translational initiation;1.01718350654639e-09!GO:0008639;small protein conjugating enzyme activity;1.01752484460496e-09!GO:0004842;ubiquitin-protein ligase activity;1.73353272109252e-09!GO:0008219;cell death;1.85510077589244e-09!GO:0016265;death;1.85510077589244e-09!GO:0048523;negative regulation of cellular process;1.94313839874575e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.98502831484314e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.98502831484314e-09!GO:0030120;vesicle coat;2.04947401519051e-09!GO:0030662;coated vesicle membrane;2.04947401519051e-09!GO:0006913;nucleocytoplasmic transport;2.14393839996435e-09!GO:0005635;nuclear envelope;2.3693063712802e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.3693063712802e-09!GO:0003712;transcription cofactor activity;2.53531080361865e-09!GO:0009141;nucleoside triphosphate metabolic process;2.54431379321775e-09!GO:0003676;nucleic acid binding;2.63693516738083e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.63693516738083e-09!GO:0006399;tRNA metabolic process;2.89868041583521e-09!GO:0000278;mitotic cell cycle;3.79855686297489e-09!GO:0008565;protein transporter activity;4.13153215006573e-09!GO:0009056;catabolic process;4.26540945134908e-09!GO:0009060;aerobic respiration;4.66811329861461e-09!GO:0051169;nuclear transport;4.88046001188758e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.01976153251983e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.01976153251983e-09!GO:0006446;regulation of translational initiation;5.01976153251983e-09!GO:0042623;ATPase activity, coupled;7.82052397359863e-09!GO:0016881;acid-amino acid ligase activity;7.82052397359863e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.8905583731336e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.8905583731336e-09!GO:0031965;nuclear membrane;8.61905293653576e-09!GO:0048475;coated membrane;9.29549095789348e-09!GO:0030117;membrane coat;9.29549095789348e-09!GO:0016887;ATPase activity;9.32396825046568e-09!GO:0015986;ATP synthesis coupled proton transport;1.13680775720606e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.13680775720606e-08!GO:0044453;nuclear membrane part;1.13945568937522e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.20354590137098e-08!GO:0005788;endoplasmic reticulum lumen;1.52558608643467e-08!GO:0045333;cellular respiration;1.69520360190613e-08!GO:0003924;GTPase activity;1.91276672042182e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.09121058525577e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.09121058525577e-08!GO:0048519;negative regulation of biological process;2.43356579544401e-08!GO:0009117;nucleotide metabolic process;2.83610998055913e-08!GO:0016491;oxidoreductase activity;2.8394996362411e-08!GO:0005768;endosome;3.48855795074118e-08!GO:0019829;cation-transporting ATPase activity;3.48905699749429e-08!GO:0016604;nuclear body;3.54976153727172e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.69964316550304e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.69964316550304e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.69964316550304e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.43144823518658e-08!GO:0016740;transferase activity;4.82110887749674e-08!GO:0051246;regulation of protein metabolic process;5.24950842134535e-08!GO:0051188;cofactor biosynthetic process;5.59885789635262e-08!GO:0046034;ATP metabolic process;6.30840195802889e-08!GO:0043038;amino acid activation;6.80434998433065e-08!GO:0006418;tRNA aminoacylation for protein translation;6.80434998433065e-08!GO:0043039;tRNA aminoacylation;6.80434998433065e-08!GO:0017038;protein import;7.45873649533415e-08!GO:0016070;RNA metabolic process;8.24971569286197e-08!GO:0006461;protein complex assembly;9.68827913421712e-08!GO:0006364;rRNA processing;1.04444500607073e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.11296128822872e-07!GO:0051726;regulation of cell cycle;1.18248801584457e-07!GO:0000074;regulation of progression through cell cycle;1.4671797721157e-07!GO:0000139;Golgi membrane;1.66567252470005e-07!GO:0016072;rRNA metabolic process;1.8282034253901e-07!GO:0043069;negative regulation of programmed cell death;1.99149579899247e-07!GO:0065002;intracellular protein transport across a membrane;2.22111849934923e-07!GO:0006754;ATP biosynthetic process;2.30610155296887e-07!GO:0006753;nucleoside phosphate metabolic process;2.30610155296887e-07!GO:0005798;Golgi-associated vesicle;2.70129599115878e-07!GO:0043067;regulation of programmed cell death;3.11542370078194e-07!GO:0006099;tricarboxylic acid cycle;3.23116443694995e-07!GO:0046356;acetyl-CoA catabolic process;3.23116443694995e-07!GO:0006916;anti-apoptosis;3.2447005793675e-07!GO:0005643;nuclear pore;3.40317167326457e-07!GO:0006323;DNA packaging;3.55493798517463e-07!GO:0006793;phosphorus metabolic process;3.91987608320119e-07!GO:0006796;phosphate metabolic process;3.91987608320119e-07!GO:0042981;regulation of apoptosis;4.43995701936878e-07!GO:0006974;response to DNA damage stimulus;4.46184197418777e-07!GO:0043066;negative regulation of apoptosis;4.66081551285203e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.10024165213675e-07!GO:0007005;mitochondrion organization and biogenesis;5.2286350728314e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.56762383847311e-07!GO:0006084;acetyl-CoA metabolic process;7.69147970944031e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.01581606359879e-07!GO:0051276;chromosome organization and biogenesis;9.69898034670644e-07!GO:0008026;ATP-dependent helicase activity;1.05082746940923e-06!GO:0016787;hydrolase activity;1.11468900021323e-06!GO:0009109;coenzyme catabolic process;1.14446926462618e-06!GO:0044440;endosomal part;1.2765781130856e-06!GO:0010008;endosome membrane;1.2765781130856e-06!GO:0051187;cofactor catabolic process;1.4407064428364e-06!GO:0016607;nuclear speck;1.80647132472097e-06!GO:0016310;phosphorylation;2.1656454080127e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.43085414672904e-06!GO:0031252;leading edge;2.75613173014499e-06!GO:0005770;late endosome;2.99556985425142e-06!GO:0031988;membrane-bound vesicle;3.07220156896465e-06!GO:0046930;pore complex;3.16763539500168e-06!GO:0009108;coenzyme biosynthetic process;3.19556478064549e-06!GO:0065004;protein-DNA complex assembly;3.36237600602077e-06!GO:0006752;group transfer coenzyme metabolic process;3.4675875290459e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.59042262493742e-06!GO:0000087;M phase of mitotic cell cycle;3.6041894993995e-06!GO:0007067;mitosis;3.84901276831996e-06!GO:0006091;generation of precursor metabolites and energy;4.06204331128659e-06!GO:0016567;protein ubiquitination;4.43323674770876e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.09505950092636e-06!GO:0032446;protein modification by small protein conjugation;5.25384489299877e-06!GO:0016853;isomerase activity;5.52732889670108e-06!GO:0004386;helicase activity;5.62033556630864e-06!GO:0045259;proton-transporting ATP synthase complex;5.72460814766506e-06!GO:0005525;GTP binding;6.19154155430429e-06!GO:0004298;threonine endopeptidase activity;6.93908143823231e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.44037108323637e-06!GO:0045454;cell redox homeostasis;7.56405814557913e-06!GO:0006281;DNA repair;8.53125094729399e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.16177014579813e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.19884143182853e-05!GO:0006260;DNA replication;1.22945770842658e-05!GO:0003714;transcription corepressor activity;1.26656847043215e-05!GO:0001558;regulation of cell growth;1.35848812767453e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.36297557899705e-05!GO:0008361;regulation of cell size;1.37089408924014e-05!GO:0005905;coated pit;1.45436670655974e-05!GO:0016049;cell growth;1.47610011033235e-05!GO:0006333;chromatin assembly or disassembly;1.50280072079524e-05!GO:0005773;vacuole;1.51926744996845e-05!GO:0005667;transcription factor complex;1.63652208004282e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.70297460611858e-05!GO:0044262;cellular carbohydrate metabolic process;1.77946517441398e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.91530168763013e-05!GO:0008092;cytoskeletal protein binding;2.13945934454492e-05!GO:0005762;mitochondrial large ribosomal subunit;2.1892379031062e-05!GO:0000315;organellar large ribosomal subunit;2.1892379031062e-05!GO:0008654;phospholipid biosynthetic process;2.27663960743913e-05!GO:0000151;ubiquitin ligase complex;2.4191075084675e-05!GO:0016779;nucleotidyltransferase activity;2.51872760415018e-05!GO:0000245;spliceosome assembly;2.52294886225881e-05!GO:0031982;vesicle;2.52842114586969e-05!GO:0022403;cell cycle phase;2.54347160368261e-05!GO:0051170;nuclear import;2.6291620713913e-05!GO:0051301;cell division;2.6421090309629e-05!GO:0015630;microtubule cytoskeleton;2.65667510982448e-05!GO:0031410;cytoplasmic vesicle;2.66066396128761e-05!GO:0006613;cotranslational protein targeting to membrane;2.87954858719587e-05!GO:0030867;rough endoplasmic reticulum membrane;2.97707924808765e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.77337128302832e-05!GO:0005694;chromosome;3.90906193751538e-05!GO:0050657;nucleic acid transport;3.95957265872634e-05!GO:0051236;establishment of RNA localization;3.95957265872634e-05!GO:0050658;RNA transport;3.95957265872634e-05!GO:0032561;guanyl ribonucleotide binding;4.00405831106928e-05!GO:0019001;guanyl nucleotide binding;4.00405831106928e-05!GO:0006403;RNA localization;4.06572515817065e-05!GO:0031968;organelle outer membrane;4.0836921195755e-05!GO:0051789;response to protein stimulus;4.14324698242079e-05!GO:0006986;response to unfolded protein;4.14324698242079e-05!GO:0006606;protein import into nucleus;4.65740210567446e-05!GO:0009719;response to endogenous stimulus;4.88980502416866e-05!GO:0006366;transcription from RNA polymerase II promoter;5.08397104969269e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.16129406524579e-05!GO:0019867;outer membrane;5.59298336957651e-05!GO:0005048;signal sequence binding;5.66056687772317e-05!GO:0030133;transport vesicle;6.16634986567166e-05!GO:0003724;RNA helicase activity;6.18443898249743e-05!GO:0050794;regulation of cellular process;6.28926818511338e-05!GO:0003697;single-stranded DNA binding;6.92654473266506e-05!GO:0016568;chromatin modification;7.29214215384606e-05!GO:0006334;nucleosome assembly;7.31534559265524e-05!GO:0044427;chromosomal part;7.4160988328927e-05!GO:0030176;integral to endoplasmic reticulum membrane;7.89456604069507e-05!GO:0003899;DNA-directed RNA polymerase activity;8.22749675320571e-05!GO:0030029;actin filament-based process;0.000100776259378419!GO:0043623;cellular protein complex assembly;0.00011348423311451!GO:0048522;positive regulation of cellular process;0.000114639036525359!GO:0045786;negative regulation of progression through cell cycle;0.000123112139348037!GO:0007010;cytoskeleton organization and biogenesis;0.000124662731193314!GO:0005741;mitochondrial outer membrane;0.000125309302105286!GO:0016859;cis-trans isomerase activity;0.000130275442385111!GO:0009165;nucleotide biosynthetic process;0.000139989983634978!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000141266080879261!GO:0000323;lytic vacuole;0.000141266080879261!GO:0005764;lysosome;0.000141266080879261!GO:0016564;transcription repressor activity;0.000141996620078394!GO:0031324;negative regulation of cellular metabolic process;0.000156392517661005!GO:0000785;chromatin;0.000156545419440997!GO:0031497;chromatin assembly;0.000161671909704797!GO:0005769;early endosome;0.000165858161858366!GO:0043566;structure-specific DNA binding;0.000169862770623291!GO:0003713;transcription coactivator activity;0.00017706028705261!GO:0016563;transcription activator activity;0.000214095834727037!GO:0005885;Arp2/3 protein complex;0.000248621489056771!GO:0030658;transport vesicle membrane;0.000261456886407987!GO:0000314;organellar small ribosomal subunit;0.000275469680190691!GO:0005763;mitochondrial small ribosomal subunit;0.000275469680190691!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000289764705108068!GO:0007243;protein kinase cascade;0.000305009278981788!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0003065770426615!GO:0043021;ribonucleoprotein binding;0.000310404968034849!GO:0008047;enzyme activator activity;0.000348958042670624!GO:0030663;COPI coated vesicle membrane;0.000364716696018512!GO:0030126;COPI vesicle coat;0.000364716696018512!GO:0046474;glycerophospholipid biosynthetic process;0.000367028138754051!GO:0006414;translational elongation;0.000391896528387439!GO:0008250;oligosaccharyl transferase complex;0.000432951866994656!GO:0006612;protein targeting to membrane;0.000437599328903727!GO:0030137;COPI-coated vesicle;0.000464023538873342!GO:0006891;intra-Golgi vesicle-mediated transport;0.00049518738625436!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000551152497772614!GO:0015399;primary active transmembrane transporter activity;0.000551152497772614!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000586465863294037!GO:0051028;mRNA transport;0.000600575648175442!GO:0040008;regulation of growth;0.000608076711716358!GO:0030660;Golgi-associated vesicle membrane;0.000641092810073999!GO:0016044;membrane organization and biogenesis;0.000662973097776291!GO:0004576;oligosaccharyl transferase activity;0.000707702912639009!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000717263646298178!GO:0008186;RNA-dependent ATPase activity;0.000724241164755127!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000742052427231632!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000753269988192656!GO:0043284;biopolymer biosynthetic process;0.000775955825494624!GO:0030118;clathrin coat;0.000838143113214481!GO:0009892;negative regulation of metabolic process;0.000857523408470644!GO:0051920;peroxiredoxin activity;0.000860557621174415!GO:0042802;identical protein binding;0.000875501739621346!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000894610747894135!GO:0006082;organic acid metabolic process;0.000935346833979351!GO:0030132;clathrin coat of coated pit;0.000951959602282846!GO:0043681;protein import into mitochondrion;0.000977401137688178!GO:0019752;carboxylic acid metabolic process;0.00104037568944692!GO:0051427;hormone receptor binding;0.00107675159706305!GO:0000279;M phase;0.001085231605327!GO:0030880;RNA polymerase complex;0.00109199357027706!GO:0019899;enzyme binding;0.0011302436746762!GO:0007006;mitochondrial membrane organization and biogenesis;0.0011302436746762!GO:0006839;mitochondrial transport;0.0011687257741612!GO:0046467;membrane lipid biosynthetic process;0.00117119974915909!GO:0065009;regulation of a molecular function;0.00123746872574509!GO:0051329;interphase of mitotic cell cycle;0.00130762097427254!GO:0007264;small GTPase mediated signal transduction;0.0013111790400273!GO:0031301;integral to organelle membrane;0.00135436923118548!GO:0031072;heat shock protein binding;0.0013711476746826!GO:0019843;rRNA binding;0.00137205569177577!GO:0018196;peptidyl-asparagine modification;0.00140825016268863!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00140825016268863!GO:0006626;protein targeting to mitochondrion;0.00144710148595291!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00146147332989766!GO:0030134;ER to Golgi transport vesicle;0.00153014585201629!GO:0048487;beta-tubulin binding;0.00163413160782263!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00167878611414936!GO:0046489;phosphoinositide biosynthetic process;0.00171541781699913!GO:0004004;ATP-dependent RNA helicase activity;0.00172381310602415!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00172381310602415!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00172381310602415!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00172381310602415!GO:0030659;cytoplasmic vesicle membrane;0.00181852338670178!GO:0015631;tubulin binding;0.00184074420142109!GO:0050789;regulation of biological process;0.00192067122001882!GO:0004177;aminopeptidase activity;0.00192286758181849!GO:0008632;apoptotic program;0.00192385440166225!GO:0051168;nuclear export;0.00197574658528239!GO:0035257;nuclear hormone receptor binding;0.00203348505442261!GO:0045792;negative regulation of cell size;0.0020578376886453!GO:0005813;centrosome;0.00206893371288231!GO:0015992;proton transport;0.00207233556994698!GO:0005791;rough endoplasmic reticulum;0.00210577762462447!GO:0045045;secretory pathway;0.00211170226019828!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00220484458923737!GO:0030308;negative regulation of cell growth;0.00223364220106759!GO:0006818;hydrogen transport;0.0024730870969123!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00250013067261041!GO:0000428;DNA-directed RNA polymerase complex;0.00250013067261041!GO:0048471;perinuclear region of cytoplasm;0.00252254587378039!GO:0005096;GTPase activator activity;0.00253148167639367!GO:0016197;endosome transport;0.00267850293408246!GO:0030127;COPII vesicle coat;0.00270134218830778!GO:0012507;ER to Golgi transport vesicle membrane;0.00270134218830778!GO:0046483;heterocycle metabolic process;0.00288313082388401!GO:0022890;inorganic cation transmembrane transporter activity;0.00314172404574765!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00324921830028021!GO:0043492;ATPase activity, coupled to movement of substances;0.0033750578625361!GO:0008610;lipid biosynthetic process;0.00345841734324185!GO:0030125;clathrin vesicle coat;0.00348927209194638!GO:0030665;clathrin coated vesicle membrane;0.00348927209194638!GO:0051325;interphase;0.0035168226580154!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00354483690877375!GO:0046519;sphingoid metabolic process;0.00362824358999747!GO:0048500;signal recognition particle;0.00367709512300782!GO:0006383;transcription from RNA polymerase III promoter;0.0036843681943179!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00383332399181615!GO:0000059;protein import into nucleus, docking;0.00388083702464545!GO:0005819;spindle;0.00389233902785021!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00406113758750538!GO:0006007;glucose catabolic process;0.00406284270115583!GO:0008139;nuclear localization sequence binding;0.00413568025611048!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00420180665808122!GO:0015002;heme-copper terminal oxidase activity;0.00420180665808122!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00420180665808122!GO:0004129;cytochrome-c oxidase activity;0.00420180665808122!GO:0044433;cytoplasmic vesicle part;0.00453642242861202!GO:0003779;actin binding;0.00454953429635633!GO:0008033;tRNA processing;0.00454953429635633!GO:0005815;microtubule organizing center;0.00460183588895554!GO:0003746;translation elongation factor activity;0.00478072790671486!GO:0044452;nucleolar part;0.00481463567332113!GO:0003711;transcription elongation regulator activity;0.00486330845879535!GO:0006520;amino acid metabolic process;0.00492166558932151!GO:0017166;vinculin binding;0.00503281549030961!GO:0031902;late endosome membrane;0.00504581336730396!GO:0030027;lamellipodium;0.00510314591788223!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00537149718895202!GO:0006807;nitrogen compound metabolic process;0.00550759936719499!GO:0006497;protein amino acid lipidation;0.00561801745888847!GO:0008243;plasminogen activator activity;0.00563383089451814!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00566728178607741!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00576672396527706!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00594902590105487!GO:0009967;positive regulation of signal transduction;0.00594902590105487!GO:0030119;AP-type membrane coat adaptor complex;0.00594902590105487!GO:0005874;microtubule;0.00597316113756289!GO:0006672;ceramide metabolic process;0.00617105759458547!GO:0006595;polyamine metabolic process;0.00619026432133095!GO:0007050;cell cycle arrest;0.00625944463199084!GO:0008180;signalosome;0.0064889612167536!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00669456127749946!GO:0051087;chaperone binding;0.00719410601802228!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00746862906266608!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00746862906266608!GO:0031543;peptidyl-proline dioxygenase activity;0.00749083410003912!GO:0048468;cell development;0.00764828147941382!GO:0003729;mRNA binding;0.00772788564179878!GO:0000049;tRNA binding;0.00784756920883783!GO:0051540;metal cluster binding;0.00812884985314653!GO:0051536;iron-sulfur cluster binding;0.00812884985314653!GO:0045941;positive regulation of transcription;0.00814080242680783!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00817167198586519!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00826551660926859!GO:0045047;protein targeting to ER;0.00826551660926859!GO:0005862;muscle thin filament tropomyosin;0.0086671123098935!GO:0030131;clathrin adaptor complex;0.00885637946801832!GO:0007040;lysosome organization and biogenesis;0.00951716549910951!GO:0016363;nuclear matrix;0.00962228502518845!GO:0005684;U2-dependent spliceosome;0.00974006374909253!GO:0016126;sterol biosynthetic process;0.00992043467568814!GO:0005869;dynactin complex;0.0099680987235663!GO:0006509;membrane protein ectodomain proteolysis;0.0100522434156037!GO:0033619;membrane protein proteolysis;0.0100522434156037!GO:0008312;7S RNA binding;0.0102764496574438!GO:0051252;regulation of RNA metabolic process;0.0102764496574438!GO:0045893;positive regulation of transcription, DNA-dependent;0.010282683921525!GO:0045936;negative regulation of phosphate metabolic process;0.0105544480220619!GO:0007033;vacuole organization and biogenesis;0.0105572673670536!GO:0016481;negative regulation of transcription;0.0105805968021756!GO:0051539;4 iron, 4 sulfur cluster binding;0.010648574562973!GO:0050662;coenzyme binding;0.010648574562973!GO:0005774;vacuolar membrane;0.010802882997758!GO:0030521;androgen receptor signaling pathway;0.010802882997758!GO:0012506;vesicle membrane;0.0108484938301611!GO:0006740;NADPH regeneration;0.0108484938301611!GO:0006098;pentose-phosphate shunt;0.0108484938301611!GO:0001726;ruffle;0.0112040443487502!GO:0004674;protein serine/threonine kinase activity;0.0112626886917305!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0113543941628201!GO:0051287;NAD binding;0.012633758783422!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0126439768922661!GO:0016301;kinase activity;0.0127882001826259!GO:0019798;procollagen-proline dioxygenase activity;0.0131373915894357!GO:0045926;negative regulation of growth;0.0131513493914654!GO:0048144;fibroblast proliferation;0.0131605563408242!GO:0048145;regulation of fibroblast proliferation;0.0131605563408242!GO:0048518;positive regulation of biological process;0.0132237132018251!GO:0005832;chaperonin-containing T-complex;0.0133697426219631!GO:0009308;amine metabolic process;0.0135782131785642!GO:0006118;electron transport;0.0136083558806058!GO:0019318;hexose metabolic process;0.0138402077663128!GO:0003684;damaged DNA binding;0.0141167745559354!GO:0033673;negative regulation of kinase activity;0.0143151811557101!GO:0006469;negative regulation of protein kinase activity;0.0143151811557101!GO:0005975;carbohydrate metabolic process;0.014347282700638!GO:0031418;L-ascorbic acid binding;0.0146532927171983!GO:0050811;GABA receptor binding;0.0146644294250598!GO:0007034;vacuolar transport;0.0147549166120695!GO:0000786;nucleosome;0.0149850994093606!GO:0005996;monosaccharide metabolic process;0.0150808967077779!GO:0006650;glycerophospholipid metabolic process;0.0151436005806776!GO:0006354;RNA elongation;0.0157402266236366!GO:0043022;ribosome binding;0.0169305174500848!GO:0050790;regulation of catalytic activity;0.0169952064704942!GO:0042158;lipoprotein biosynthetic process;0.0173700416105626!GO:0043488;regulation of mRNA stability;0.0173700416105626!GO:0043487;regulation of RNA stability;0.0173700416105626!GO:0005100;Rho GTPase activator activity;0.017573899191289!GO:0006417;regulation of translation;0.0177005193841639!GO:0051348;negative regulation of transferase activity;0.0180159192404722!GO:0031300;intrinsic to organelle membrane;0.0187100757254015!GO:0018193;peptidyl-amino acid modification;0.0188883188208153!GO:0035258;steroid hormone receptor binding;0.0193214266478346!GO:0006352;transcription initiation;0.0194407328832606!GO:0000209;protein polyubiquitination;0.0204030060692709!GO:0031529;ruffle organization and biogenesis;0.020540720838888!GO:0006289;nucleotide-excision repair;0.0208261950180971!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0209314189165892!GO:0016272;prefoldin complex;0.0213295843640156!GO:0031124;mRNA 3'-end processing;0.0215379869131901!GO:0006506;GPI anchor biosynthetic process;0.0216429419776286!GO:0032940;secretion by cell;0.0216639445242342!GO:0009112;nucleobase metabolic process;0.0218125631294873!GO:0007265;Ras protein signal transduction;0.0218152168678933!GO:0046426;negative regulation of JAK-STAT cascade;0.0220109899774346!GO:0000287;magnesium ion binding;0.0220143174759726!GO:0007021;tubulin folding;0.0220587885173063!GO:0008022;protein C-terminus binding;0.0227394141071731!GO:0006778;porphyrin metabolic process;0.0230238199020441!GO:0033013;tetrapyrrole metabolic process;0.0230238199020441!GO:0031901;early endosome membrane;0.0230335847985204!GO:0006096;glycolysis;0.0230965137196639!GO:0042326;negative regulation of phosphorylation;0.0231541182557556!GO:0003756;protein disulfide isomerase activity;0.0231541182557556!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0231541182557556!GO:0006979;response to oxidative stress;0.0236483618845993!GO:0044437;vacuolar part;0.0240911293266006!GO:0048146;positive regulation of fibroblast proliferation;0.0241523624127161!GO:0006695;cholesterol biosynthetic process;0.0244427054906055!GO:0006984;ER-nuclear signaling pathway;0.0245894313395784!GO:0006897;endocytosis;0.0247525101374991!GO:0010324;membrane invagination;0.0247525101374991!GO:0042168;heme metabolic process;0.0248541768401983!GO:0006378;mRNA polyadenylation;0.0250052339426366!GO:0008538;proteasome activator activity;0.0250930746872169!GO:0000030;mannosyltransferase activity;0.025155822488307!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0261289616407852!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0261378118861883!GO:0006739;NADP metabolic process;0.0265967198957955!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0268743815242316!GO:0007242;intracellular signaling cascade;0.0269973522828704!GO:0016408;C-acyltransferase activity;0.0273547329620539!GO:0000082;G1/S transition of mitotic cell cycle;0.0273574221781143!GO:0006611;protein export from nucleus;0.0284104600900107!GO:0046365;monosaccharide catabolic process;0.0289438380922892!GO:0009116;nucleoside metabolic process;0.0294059247042946!GO:0035035;histone acetyltransferase binding;0.0294910819120009!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0297646929824538!GO:0006892;post-Golgi vesicle-mediated transport;0.0304117010673144!GO:0008637;apoptotic mitochondrial changes;0.0305213581795672!GO:0005765;lysosomal membrane;0.030745490360364!GO:0006779;porphyrin biosynthetic process;0.0308752329731696!GO:0033014;tetrapyrrole biosynthetic process;0.0308752329731696!GO:0006783;heme biosynthetic process;0.0315204042560396!GO:0048037;cofactor binding;0.0315557384566116!GO:0051098;regulation of binding;0.0316309188846445!GO:0000339;RNA cap binding;0.0317961717470733!GO:0031970;organelle envelope lumen;0.031923594227857!GO:0005092;GDP-dissociation inhibitor activity;0.031923594227857!GO:0009889;regulation of biosynthetic process;0.031923594227857!GO:0006458;'de novo' protein folding;0.031923594227857!GO:0051084;'de novo' posttranslational protein folding;0.031923594227857!GO:0006405;RNA export from nucleus;0.0320730623521403!GO:0006401;RNA catabolic process;0.0323307878737804!GO:0006505;GPI anchor metabolic process;0.0323307878737804!GO:0031625;ubiquitin protein ligase binding;0.0324099626248384!GO:0030433;ER-associated protein catabolic process;0.0326463302102704!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0326463302102704!GO:0030032;lamellipodium biogenesis;0.0329483738243741!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0331718956246656!GO:0006376;mRNA splice site selection;0.0331718956246656!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0331718956246656!GO:0006635;fatty acid beta-oxidation;0.0344641198915825!GO:0005099;Ras GTPase activator activity;0.0349991296774401!GO:0006519;amino acid and derivative metabolic process;0.0350087171355903!GO:0004722;protein serine/threonine phosphatase activity;0.0351884737016399!GO:0007030;Golgi organization and biogenesis;0.0359908165895584!GO:0030041;actin filament polymerization;0.0370199974239595!GO:0007088;regulation of mitosis;0.03702103175469!GO:0022415;viral reproductive process;0.0379495515537709!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0379495515537709!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0379495515537709!GO:0005669;transcription factor TFIID complex;0.0379495515537709!GO:0030384;phosphoinositide metabolic process;0.0379790661984127!GO:0006402;mRNA catabolic process;0.0382049935938994!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0382301746963359!GO:0005758;mitochondrial intermembrane space;0.0385355819489149!GO:0009166;nucleotide catabolic process;0.0390544424632349!GO:0006643;membrane lipid metabolic process;0.0390544424632349!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0401105502657681!GO:0030140;trans-Golgi network transport vesicle;0.0403529477350739!GO:0032984;macromolecular complex disassembly;0.0410423839244306!GO:0030911;TPR domain binding;0.0412951525137063!GO:0019320;hexose catabolic process;0.0415387596822671!GO:0030145;manganese ion binding;0.0419977031394655!GO:0006261;DNA-dependent DNA replication;0.0420387623402466!GO:0032906;transforming growth factor-beta2 production;0.0424676845342857!GO:0032909;regulation of transforming growth factor-beta2 production;0.0424676845342857!GO:0031326;regulation of cellular biosynthetic process;0.0426859742564337!GO:0048660;regulation of smooth muscle cell proliferation;0.0428916644625915!GO:0050681;androgen receptor binding;0.0430127723129713!GO:0009303;rRNA transcription;0.0430478573519794!GO:0019206;nucleoside kinase activity;0.0430478573519794!GO:0045334;clathrin-coated endocytic vesicle;0.0432435208294246!GO:0035267;NuA4 histone acetyltransferase complex;0.0433320694036522!GO:0043189;H4/H2A histone acetyltransferase complex;0.0434212678779653!GO:0000096;sulfur amino acid metabolic process;0.0436289355107607!GO:0006518;peptide metabolic process;0.0439399029776111!GO:0046164;alcohol catabolic process;0.0440993044561402!GO:0016860;intramolecular oxidoreductase activity;0.0443488358696719!GO:0001666;response to hypoxia;0.0452269430037163!GO:0004680;casein kinase activity;0.0458338530282656!GO:0030518;steroid hormone receptor signaling pathway;0.0468605269189117!GO:0030508;thiol-disulfide exchange intermediate activity;0.0469222597868996!GO:0031371;ubiquitin conjugating enzyme complex;0.0474353355646703!GO:0006220;pyrimidine nucleotide metabolic process;0.0489165957927842!GO:0030149;sphingolipid catabolic process;0.0491571394464975!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0494815949502689!GO:0010257;NADH dehydrogenase complex assembly;0.0494815949502689!GO:0033108;mitochondrial respiratory chain complex assembly;0.0494815949502689!GO:0008652;amino acid biosynthetic process;0.0497878651207023!GO:0000075;cell cycle checkpoint;0.0499094075874386 | |||
|sample_id=11290 | |sample_id=11290 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical artery | |sample_tissue=umbilical artery | ||
|top_motifs=SRF:1.99009551903;GTF2A1,2:1.54357716842;HOX{A5,B5}:1.51221815614;PPARG:1.43476968909;CRX:1.26580281245;TP53:1.20368089187;HIF1A:1.18116578484;PAX8:1.11218436655;ADNP_IRX_SIX_ZHX:1.0495266116;EN1,2:1.00732174067;ZNF148:0.978859440105;IKZF1:0.964699490127;SOX17:0.927376337053;NFE2L1:0.921176728581;GLI1..3:0.896061711538;ONECUT1,2:0.875836028304;HAND1,2:0.866945626428;HES1:0.817030442645;TFAP4:0.796205397753;STAT5{A,B}:0.779914798671;ZBTB6:0.750714666733;TEAD1:0.732975614247;NFATC1..3:0.729782176389;POU3F1..4:0.700832309361;TBX4,5:0.691602543248;TFAP2{A,C}:0.668515013599;TBP:0.667023810548;MAFB:0.66180011479;GCM1,2:0.648283700359;NR3C1:0.635698581438;ATF6:0.630551067325;HMGA1,2:0.62879212817;EBF1:0.62608887948;FOX{I1,J2}:0.557810162149;TLX1..3_NFIC{dimer}:0.551434936008;GFI1B:0.534969931227;TFCP2:0.529418349729;FOSL2:0.524734499685;NFE2L2:0.522350016729;ZNF238:0.514904318332;KLF4:0.498082582421;MYBL2:0.492012627879;SMAD1..7,9:0.473354241257;FOXL1:0.448494503771;BACH2:0.435971873623;HMX1:0.423077014112;NR5A1,2:0.418710864591;AR:0.409766153631;ZIC1..3:0.402831218807;LHX3,4:0.395166185014;FOS_FOS{B,L1}_JUN{B,D}:0.379687732526;XCPE1{core}:0.37210637532;HSF1,2:0.351663507619;SOX{8,9,10}:0.344532985639;POU6F1:0.322598134914;MEF2{A,B,C,D}:0.317214403483;TEF:0.312488659872;NKX3-2:0.310652074865;ELK1,4_GABP{A,B1}:0.308213104041;JUN:0.306728190525;ESR1:0.290367127266;GZF1:0.273816535277;MTE{core}:0.271253937484;ZNF384:0.264731439197;XBP1:0.26305780639;LEF1_TCF7_TCF7L1,2:0.259436664922;POU1F1:0.259253986494;NR6A1:0.244615560267;REST:0.23638316121;RXR{A,B,G}:0.235708823264;HLF:0.235334631388;VSX1,2:0.209138133076;SOX2:0.206855709615;NHLH1,2:0.205621760808;TAL1_TCF{3,4,12}:0.2016107689;NFE2:0.19500078166;UFEwm:0.194364313291;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.179414954515;GATA6:0.168563937556;NKX2-3_NKX2-5:0.16437637381;HIC1:0.162403226779;HBP1_HMGB_SSRP1_UBTF:0.153466624137;ALX4:0.144813418764;bHLH_family:0.138839919221;POU2F1..3:0.137369627886;ARID5B:0.124508363036;GTF2I:0.123895138223;PRDM1:0.118313190101;NANOG{mouse}:0.110750137765;MYOD1:0.105812044045;TFAP2B:0.105271439065;NANOG:0.0895661393571;CDC5L:0.081094728291;AHR_ARNT_ARNT2:0.06101716491;NFKB1_REL_RELA:0.0576804629357;HNF1A:0.0566799731667;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0514376145257;ZNF423:0.0466416693458;PBX1:0.0370315257636;PAX5:0.0342340633776;NKX2-2,8:0.0192970264889;NFIX:0.00802384982266;SPZ1:-0.00865058634691;NKX3-1:-0.013427132743;RXRA_VDR{dimer}:-0.0147055118797;EVI1:-0.0251123003301;ETS1,2:-0.0271449501028;DBP:-0.043350368236;FOX{F1,F2,J1}:-0.0518366565446;ALX1:-0.0538980625857;RUNX1..3:-0.0751439041785;PAX1,9:-0.111169229643;MAZ:-0.121843547767;ZNF143:-0.125235627039;PAX2:-0.139389881256;MZF1:-0.140540167156;TFDP1:-0.142553629567;CEBPA,B_DDIT3:-0.146613228966;PDX1:-0.149902365323;LMO2:-0.157683235367;PITX1..3:-0.165879366971;GATA4:-0.169588733955;OCT4_SOX2{dimer}:-0.173656934548;ZFP161:-0.176547531566;PATZ1:-0.180845729294;EP300:-0.216650387739;MYB:-0.217183484607;TOPORS:-0.219053158256;POU5F1:-0.220821710969;SP1:-0.225549157785;ESRRA:-0.228385395805;ELF1,2,4:-0.241700539424;FOXA2:-0.25355608363;GFI1:-0.261734114274;YY1:-0.262839867328;RFX1:-0.267527729747;NRF1:-0.281416672003;STAT2,4,6:-0.284455942585;AIRE:-0.289229163883;ATF2:-0.289853733481;MTF1:-0.308777791314;DMAP1_NCOR{1,2}_SMARC:-0.336407133998;RREB1:-0.352575252239;HNF4A_NR2F1,2:-0.362197571743;RORA:-0.362618180717;EGR1..3:-0.378346895587;PRRX1,2:-0.399028988326;SPI1:-0.424610559225;ZEB1:-0.442625568578;MYFfamily:-0.450323325323;FOX{D1,D2}:-0.455210550226;TGIF1:-0.457367301071;HOX{A6,A7,B6,B7}:-0.463208777292;T:-0.466772209922;NFIL3:-0.46992921107;SPIB:-0.472832231924;MED-1{core}:-0.528906433098;SNAI1..3:-0.533883176222;HOXA9_MEIS1:-0.535050653827;PAX6:-0.535169900937;PAX3,7:-0.563322792498;ATF4:-0.659977038627;NFY{A,B,C}:-0.66460904689;ATF5_CREB3:-0.685913686694;HOX{A4,D4}:-0.6985259115;FOXQ1:-0.71468005656;TLX2:-0.751805483155;CREB1:-0.756739881171;PAX4:-0.759852700529;IKZF2:-0.760717977752;CUX2:-0.77071152849;E2F1..5:-0.771634704568;FOXM1:-0.779281321007;NKX2-1,4:-0.791686625064;SREBF1,2:-0.793135854948;IRF1,2:-0.831113659217;NR1H4:-0.845516958707;IRF7:-0.878677656124;FOXD3:-0.928677751275;SOX5:-0.947899599516;RFX2..5_RFXANK_RFXAP:-0.95648300633;CDX1,2,4:-0.973642102348;BREu{core}:-1.02823898174;ZBTB16:-1.02940079777;STAT1,3:-1.09776376735;FOXP3:-1.10265957168;FOXN1:-1.10295778058;BPTF:-1.18439507682;FOXP1:-1.27200010821;FOXO1,3,4:-1.27728202876;NKX6-1,2:-1.41240287779;RBPJ:-2.18996424925 | |top_motifs=SRF:1.99009551903;GTF2A1,2:1.54357716842;HOX{A5,B5}:1.51221815614;PPARG:1.43476968909;CRX:1.26580281245;TP53:1.20368089187;HIF1A:1.18116578484;PAX8:1.11218436655;ADNP_IRX_SIX_ZHX:1.0495266116;EN1,2:1.00732174067;ZNF148:0.978859440105;IKZF1:0.964699490127;SOX17:0.927376337053;NFE2L1:0.921176728581;GLI1..3:0.896061711538;ONECUT1,2:0.875836028304;HAND1,2:0.866945626428;HES1:0.817030442645;TFAP4:0.796205397753;STAT5{A,B}:0.779914798671;ZBTB6:0.750714666733;TEAD1:0.732975614247;NFATC1..3:0.729782176389;POU3F1..4:0.700832309361;TBX4,5:0.691602543248;TFAP2{A,C}:0.668515013599;TBP:0.667023810548;MAFB:0.66180011479;GCM1,2:0.648283700359;NR3C1:0.635698581438;ATF6:0.630551067325;HMGA1,2:0.62879212817;EBF1:0.62608887948;FOX{I1,J2}:0.557810162149;TLX1..3_NFIC{dimer}:0.551434936008;GFI1B:0.534969931227;TFCP2:0.529418349729;FOSL2:0.524734499685;NFE2L2:0.522350016729;ZNF238:0.514904318332;KLF4:0.498082582421;MYBL2:0.492012627879;SMAD1..7,9:0.473354241257;FOXL1:0.448494503771;BACH2:0.435971873623;HMX1:0.423077014112;NR5A1,2:0.418710864591;AR:0.409766153631;ZIC1..3:0.402831218807;LHX3,4:0.395166185014;FOS_FOS{B,L1}_JUN{B,D}:0.379687732526;XCPE1{core}:0.37210637532;HSF1,2:0.351663507619;SOX{8,9,10}:0.344532985639;POU6F1:0.322598134914;MEF2{A,B,C,D}:0.317214403483;TEF:0.312488659872;NKX3-2:0.310652074865;ELK1,4_GABP{A,B1}:0.308213104041;JUN:0.306728190525;ESR1:0.290367127266;GZF1:0.273816535277;MTE{core}:0.271253937484;ZNF384:0.264731439197;XBP1:0.26305780639;LEF1_TCF7_TCF7L1,2:0.259436664922;POU1F1:0.259253986494;NR6A1:0.244615560267;REST:0.23638316121;RXR{A,B,G}:0.235708823264;HLF:0.235334631388;VSX1,2:0.209138133076;SOX2:0.206855709615;NHLH1,2:0.205621760808;TAL1_TCF{3,4,12}:0.2016107689;NFE2:0.19500078166;UFEwm:0.194364313291;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.179414954515;GATA6:0.168563937556;NKX2-3_NKX2-5:0.16437637381;HIC1:0.162403226779;HBP1_HMGB_SSRP1_UBTF:0.153466624137;ALX4:0.144813418764;bHLH_family:0.138839919221;POU2F1..3:0.137369627886;ARID5B:0.124508363036;GTF2I:0.123895138223;PRDM1:0.118313190101;NANOG{mouse}:0.110750137765;MYOD1:0.105812044045;TFAP2B:0.105271439065;NANOG:0.0895661393571;CDC5L:0.081094728291;AHR_ARNT_ARNT2:0.06101716491;NFKB1_REL_RELA:0.0576804629357;HNF1A:0.0566799731667;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0514376145257;ZNF423:0.0466416693458;PBX1:0.0370315257636;PAX5:0.0342340633776;NKX2-2,8:0.0192970264889;NFIX:0.00802384982266;SPZ1:-0.00865058634691;NKX3-1:-0.013427132743;RXRA_VDR{dimer}:-0.0147055118797;EVI1:-0.0251123003301;ETS1,2:-0.0271449501028;DBP:-0.043350368236;FOX{F1,F2,J1}:-0.0518366565446;ALX1:-0.0538980625857;RUNX1..3:-0.0751439041785;PAX1,9:-0.111169229643;MAZ:-0.121843547767;ZNF143:-0.125235627039;PAX2:-0.139389881256;MZF1:-0.140540167156;TFDP1:-0.142553629567;CEBPA,B_DDIT3:-0.146613228966;PDX1:-0.149902365323;LMO2:-0.157683235367;PITX1..3:-0.165879366971;GATA4:-0.169588733955;OCT4_SOX2{dimer}:-0.173656934548;ZFP161:-0.176547531566;PATZ1:-0.180845729294;EP300:-0.216650387739;MYB:-0.217183484607;TOPORS:-0.219053158256;POU5F1:-0.220821710969;SP1:-0.225549157785;ESRRA:-0.228385395805;ELF1,2,4:-0.241700539424;FOXA2:-0.25355608363;GFI1:-0.261734114274;YY1:-0.262839867328;RFX1:-0.267527729747;NRF1:-0.281416672003;STAT2,4,6:-0.284455942585;AIRE:-0.289229163883;ATF2:-0.289853733481;MTF1:-0.308777791314;DMAP1_NCOR{1,2}_SMARC:-0.336407133998;RREB1:-0.352575252239;HNF4A_NR2F1,2:-0.362197571743;RORA:-0.362618180717;EGR1..3:-0.378346895587;PRRX1,2:-0.399028988326;SPI1:-0.424610559225;ZEB1:-0.442625568578;MYFfamily:-0.450323325323;FOX{D1,D2}:-0.455210550226;TGIF1:-0.457367301071;HOX{A6,A7,B6,B7}:-0.463208777292;T:-0.466772209922;NFIL3:-0.46992921107;SPIB:-0.472832231924;MED-1{core}:-0.528906433098;SNAI1..3:-0.533883176222;HOXA9_MEIS1:-0.535050653827;PAX6:-0.535169900937;PAX3,7:-0.563322792498;ATF4:-0.659977038627;NFY{A,B,C}:-0.66460904689;ATF5_CREB3:-0.685913686694;HOX{A4,D4}:-0.6985259115;FOXQ1:-0.71468005656;TLX2:-0.751805483155;CREB1:-0.756739881171;PAX4:-0.759852700529;IKZF2:-0.760717977752;CUX2:-0.77071152849;E2F1..5:-0.771634704568;FOXM1:-0.779281321007;NKX2-1,4:-0.791686625064;SREBF1,2:-0.793135854948;IRF1,2:-0.831113659217;NR1H4:-0.845516958707;IRF7:-0.878677656124;FOXD3:-0.928677751275;SOX5:-0.947899599516;RFX2..5_RFXANK_RFXAP:-0.95648300633;CDX1,2,4:-0.973642102348;BREu{core}:-1.02823898174;ZBTB16:-1.02940079777;STAT1,3:-1.09776376735;FOXP3:-1.10265957168;FOXN1:-1.10295778058;BPTF:-1.18439507682;FOXP1:-1.27200010821;FOXO1,3,4:-1.27728202876;NKX6-1,2:-1.41240287779;RBPJ:-2.18996424925 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11290-117A3;search_select_hide=table117:FF:11290-117A3 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Smooth Muscle Cells - Umbilical Artery, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11091 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11091
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11091
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.602 |
| 10 | 10 | 0.449 |
| 100 | 100 | 0.918 |
| 101 | 101 | 0.392 |
| 102 | 102 | 0.816 |
| 103 | 103 | 0.266 |
| 104 | 104 | 0.397 |
| 105 | 105 | 0.64 |
| 106 | 106 | 0.0158 |
| 107 | 107 | 0.0302 |
| 108 | 108 | 0.438 |
| 109 | 109 | 0.102 |
| 11 | 11 | 0.12 |
| 110 | 110 | 0.518 |
| 111 | 111 | 0.744 |
| 112 | 112 | 0.511 |
| 113 | 113 | 0.109 |
| 114 | 114 | 0.132 |
| 115 | 115 | 0.903 |
| 116 | 116 | 0.168 |
| 117 | 117 | 0.728 |
| 118 | 118 | 0.804 |
| 119 | 119 | 0.0683 |
| 12 | 12 | 0.698 |
| 120 | 120 | 0.11 |
| 121 | 121 | 0.503 |
| 122 | 122 | 0.469 |
| 123 | 123 | 0.0103 |
| 124 | 124 | 0.379 |
| 125 | 125 | 0.829 |
| 126 | 126 | 0.815 |
| 127 | 127 | 0.561 |
| 128 | 128 | 0.145 |
| 129 | 129 | 0.989 |
| 13 | 13 | 0.991 |
| 130 | 130 | 0.548 |
| 131 | 131 | 0.0788 |
| 132 | 132 | 0.906 |
| 133 | 133 | 0.885 |
| 134 | 134 | 0.177 |
| 135 | 135 | 0.0216 |
| 136 | 136 | 0.853 |
| 137 | 137 | 0.631 |
| 138 | 138 | 0.236 |
| 139 | 139 | 0.0832 |
| 14 | 14 | 0.621 |
| 140 | 140 | 0.483 |
| 141 | 141 | 0.152 |
| 142 | 142 | 0.869 |
| 143 | 143 | 0.00956 |
| 144 | 144 | 0.598 |
| 145 | 145 | 0.189 |
| 146 | 146 | 0.302 |
| 147 | 147 | 0.206 |
| 148 | 148 | 0.818 |
| 149 | 149 | 0.121 |
| 15 | 15 | 0.421 |
| 150 | 150 | 0.0797 |
| 151 | 151 | 0.484 |
| 152 | 152 | 0.0233 |
| 153 | 153 | 0.605 |
| 154 | 154 | 0.896 |
| 155 | 155 | 0.0529 |
| 156 | 156 | 0.789 |
| 157 | 157 | 0.441 |
| 158 | 158 | 0.0537 |
| 159 | 159 | 0.362 |
| 16 | 16 | 0.205 |
| 160 | 160 | 0.0915 |
| 161 | 161 | 0.945 |
| 162 | 162 | 0.435 |
| 163 | 163 | 0.712 |
| 164 | 164 | 0.472 |
| 165 | 165 | 0.586 |
| 166 | 166 | 0.915 |
| 167 | 167 | 0.628 |
| 168 | 168 | 0.48 |
| 169 | 169 | 0.0701 |
| 17 | 17 | 0.0911 |
| 18 | 18 | 0.0983 |
| 19 | 19 | 0.129 |
| 2 | 2 | 0.34 |
| 20 | 20 | 0.534 |
| 21 | 21 | 0.797 |
| 22 | 22 | 0.203 |
| 23 | 23 | 0.0487 |
| 24 | 24 | 0.0927 |
| 25 | 25 | 0.496 |
| 26 | 26 | 0.676 |
| 27 | 27 | 0.724 |
| 28 | 28 | 0.416 |
| 29 | 29 | 0.308 |
| 3 | 3 | 0.439 |
| 30 | 30 | 0.594 |
| 31 | 31 | 0.372 |
| 32 | 32 | 2.73488e-4 |
| 33 | 33 | 0.487 |
| 34 | 34 | 0.482 |
| 35 | 35 | 0.493 |
| 36 | 36 | 0.477 |
| 37 | 37 | 0.054 |
| 38 | 38 | 0.914 |
| 39 | 39 | 0.42 |
| 4 | 4 | 0.333 |
| 40 | 40 | 0.185 |
| 41 | 41 | 0.302 |
| 42 | 42 | 0.587 |
| 43 | 43 | 0.31 |
| 44 | 44 | 0.713 |
| 45 | 45 | 0.342 |
| 46 | 46 | 0.218 |
| 47 | 47 | 0.335 |
| 48 | 48 | 0.224 |
| 49 | 49 | 0.498 |
| 5 | 5 | 0.487 |
| 50 | 50 | 0.479 |
| 51 | 51 | 0.889 |
| 52 | 52 | 0.416 |
| 53 | 53 | 0.48 |
| 54 | 54 | 0.777 |
| 55 | 55 | 0.569 |
| 56 | 56 | 0.385 |
| 57 | 57 | 0.276 |
| 58 | 58 | 0.589 |
| 59 | 59 | 0.116 |
| 6 | 6 | 0.981 |
| 60 | 60 | 0.375 |
| 61 | 61 | 0.906 |
| 62 | 62 | 0.83 |
| 63 | 63 | 0.14 |
| 64 | 64 | 0.52 |
| 65 | 65 | 0.353 |
| 66 | 66 | 0.687 |
| 67 | 67 | 0.342 |
| 68 | 68 | 0.205 |
| 69 | 69 | 0.624 |
| 7 | 7 | 0.994 |
| 70 | 70 | 0.0861 |
| 71 | 71 | 0.41 |
| 72 | 72 | 0.662 |
| 73 | 73 | 0.0109 |
| 74 | 74 | 0.954 |
| 75 | 75 | 0.357 |
| 76 | 76 | 0.458 |
| 77 | 77 | 0.0253 |
| 78 | 78 | 0.487 |
| 79 | 79 | 0.317 |
| 8 | 8 | 0.0853 |
| 80 | 80 | 0.376 |
| 81 | 81 | 0.652 |
| 82 | 82 | 0.274 |
| 83 | 83 | 0.979 |
| 84 | 84 | 0.786 |
| 85 | 85 | 0.0857 |
| 86 | 86 | 0.76 |
| 87 | 87 | 0.0187 |
| 88 | 88 | 0.0874 |
| 89 | 89 | 0.0661 |
| 9 | 9 | 0.268 |
| 90 | 90 | 0.993 |
| 91 | 91 | 0.743 |
| 92 | 92 | 0.338 |
| 93 | 93 | 0.291 |
| 94 | 94 | 0.74 |
| 95 | 95 | 0.295 |
| 96 | 96 | 0.908 |
| 97 | 97 | 0.402 |
| 98 | 98 | 0.457 |
| 99 | 99 | 0.00219 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11091
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002594 smooth muscle cell of the umbilical artery
EFO:0002091 biological replicate
FF:0000167 smooth muscle cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
