FF:10614-108G2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005958 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007890;DRR008762;DRZ000187;DRZ001572;DRZ011537;DRZ012922 | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100787,FF:0102380,FF:0102384 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100787,FF:0101120 | |fonse_cell_line=FF:0100787,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100787,FF:0101120 | |fonse_cell_line_closure=FF:0100787,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10614-108G2 | |id=FF:10614-108G2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102384 | ||
|is_obsolete= | |||
|library_id=CNhs11737 | |||
|library_id_phase_based=2:CNhs11737 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10614 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10614 | |||
|name=gastric adenocarcinoma cell line:MKN1 | |name=gastric adenocarcinoma cell line:MKN1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11737,LSID819,release009,COMPLETED | |profile_hcage=CNhs11737,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.150411616341622,0,0,0,0,-0.0143081326289919,0.146009897457394,-0.07339721254388,0.474981049941313,0,0,0,0,0,0,0,0,0,0,0.079112335990984,0,0,0.0506419093012064,0,0,0,0.073004948728697,0,0.406907757567826,0,0,0.122132130869951,0,0,0,0,0,0,0,0,0,0,0.255088720648814,0,0.0045118993756089,0.255088720648814,0.079112335990984,0,0.079112335990984,0,0,0,0,0.0153411468826577,0,0,0,0,0,0,0,0.459011450279092,0,0,-0.0182312912221129,0,0,0,0,0,0,0,0.0219525385764536,0,0,0,0,0,0,0,0,0,0,0,0,0.168947730859602,0,0,0,-0.0103770187600056,0,0,0,0.146857970089511,-0.0400988445335016,0,0,0.039556167995492,0,0.105929568411928,0.36563635727616,0,0,0,0,0,0,0.203964919649634,0,0,0,0.229526820149224,0,0,0,0,0,0,-0.056817425926969,0,0,0,-0.00579231112751172,-0.0605346468113364,0,0,0.188227572451004,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.105929568411928,0,0,0,0,0,0,0,0,0,0,0,-0.10116897782817,0,-0.0593673622784997,0.00249475493392232,0.039556167995492,0,0.12053724991788,0,0.079112335990984,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0.039556167995492,0,0.079112335990984,0,0.039556167995492,-0.226359894907423,0,0.191770319962246,0.750848745716708,0,0,0,0,0.23120732399614,0,-0.120879483793741,0.0632897291339769,0,-0.20447824733865,-0.04680465889238,0,0,0,-0.27308197102443,-0.35594475428268,0,0,-0.082223683756382,0.0990147584047923,0,0,-0.391044581551635,0,0.0225428396658011,0.0895735972754665,0,0.124401287015923,0,0,0,0,0,0,0,0.079112335990984,0.079112335990984,0,0,-0.0574934668214365,-0.0718998760301552,0.0124278068682523,0.079112335990984,0.203964919649634,0.079112335990984,-0.0108263520729053,0,0,0.00668385270515875,0.0283944653369348,-0.0344566679554448,0.108853265507415,0,-0.302389727009913,0.0471962959847142,0.38733648659513,0.146857970089511,-0.147401849371139,0.0139832000997867,0.079112335990984,-0.0399056188990852,0.0941817855020955,-0.0458416361097364,-0.0103770187600056,0.0954929727479105,-0.374432164899468,0.2212411105902,0,0,0.230935677289698,-0.102709628127221,0,0.098374347519911,-0.147917598152039,0.0115867565068636,-0.142723673724162,0.27388021277933,0.552239715136032,-0.109888117321075,0.0334724202720265,-0.0105442777573626,0.0237650710675225,0.237972436750852,0,0.556003811521697,-0.0351704476459018,-0.120576318147929,0.195988605751003,0.161980417529225,0.00380414550923869,0.293829128896923,0.763811879019132,0.039556167995492,-0.0708975892010158,0.050806271851408,0,0,0.0441569528287227,0,0,0,0.00115178556362828,0.079112335990984,0.0774178234435812,0.0399867158782469,-0.0288906419059107,0.00458061519435904,0.00097582668116336,0.039556167995492,-0.0075466508983799,0,-0.0808589616107191,0.098652471072438,-0.152064254903898,0.200325035544984,0,-0.0647182789143464,-0.316691860286388,-0.164990696339003,-0.0801976890670033,0.3215231818499,0.0615728715477032,-0.0652475595565745,-0.136709337077685,0.489421891248232,0.066444183332477,0.944921613678928,0,0.165296594480368,-0.378674898938281,0.0729200845492373,-0.291562440073892,0.079112335990984,-0.0721202619983754,0,-0.0714958215836768,0,0.0227619564834313,-0.125714894999731,-0.293279477123292,0.0507019120825336,0,0.0471443509476882,0.573201265663072,0,0.0579745386899533,0,0.300823232683244,-0.0712547473436553,0.182758448103525,-0.109667968039772,-0.0994332886837026,0,-0.210601299481243,0,0,0.0867663562036189,0.407657054429363,0,0.212454072067001,0.259671099292796,-0.189497184721786,-0.03685873744395,0.079112335990984,0,0.199043190906222,0,0,0.384926612057111,0,-0.239813315296908,-0.0493614218371216,-0.0564780954731095,0.0329158183660535,0,0,0.237191090508333,0.079112335990984,-0.199799543828276,0,0,0.0615464265621355,0,0,0,0,0,0,0,0,0,0,0,0,-0.0780025104695548,-0.0126362138917138,0.146009897457394,-0.183226252213953,0,0.146009897457394,0,0,0.203964919649634,-0.0881770666709444,0,0,-0.551314159602439,0.0126157448062546,0.132071304972393,0.112561116724189,0,0.039556167995492,0,0.261122146311049,0.000728357554910297,0,0.0721022131520024,0,0.171098558162367,0,0,0.168947730859602,0,0,0,0.039556167995492,-0.057730457053664,-0.157116657700282,0,0,0,0.73127271455232,0,0,0.414718856473509,0,-0.160554923631786,0,0,0.160114631937054,0,-0.047773309171528,-0.00246954355585736,0,0.05445469452208,-0.378430517223554,1.19075251407568,0,0,0.454322161161877,0,0.00517245269153745,-0.392811229439496,0,0,0,0,0,0,0,0.31733606749313,0.079112335990984,-0.0683046149423614,0,0.23935906459427,0,0,0,0,0,0,0,0,0,0.0236300505945148,0.0537858407988838,0.079112335990984,0,0,0,0,0,0,0.205420797070321,0.010650866299072,0,0,0,0,0.0219525385764536,0,0,0,0.209487877518151,0.229526820149224,0,0,0,0,0.459011450279092,0,0,0,0.300823232683244,0.694873379233812,0,0,-0.07339721254388,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0806458336141863,-0.187545534663027,0,0,0,0,0,0.146009897457394,0,0.105136710455635,0,0.255088720648814,0,0,-0.113884373708977,0,0,0,0.0991685348604776,0,-0.0143081326289919,0,0,0,0,0,0.108005512276047,0.189985004330863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0655270953121101,-0.0247755787802223,0,0.0239136864959255,0,0,0.045373553127807,0,0,0,0,0,0,0.176019004208227,0.0440489336866987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0381469049236087,0,0,0,0,0,0,0,0.406907757567826,0,0,-0.0524766418050341,0,0,0,0,0,0,0.00176258879749715,0.286527324168649,-0.0282333129644335,0,0,0,-0.014829404486963,0,0,0.0128224645590807,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.446892175139232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0506419093012064,0,0,0,0,0,0,0,0,0,0,0,0,0.039556167995492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0.079112335990984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.039556167995492,0,0,0,0,0.146009897457394,0.475985343253059,0,0,0,-0.0670763321996495,0,0,0,0,0,0,0.255088720648814,0,0.446892175139232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531186987743647,0,0,0,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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=29.35714 | |rna_weight_ug=29.35714 | ||
|sample_age=72 | |sample_age=72 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1003 | |sample_cell_catalog=RCB1003 | ||
|sample_cell_line=MKN1 | |sample_cell_line=MKN1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.04607622444074e-258!GO:0043226;organelle;3.71769190091483e-206!GO:0043229;intracellular organelle;1.57088081422879e-205!GO:0043231;intracellular membrane-bound organelle;5.59548580637209e-202!GO:0043227;membrane-bound organelle;5.59548580637209e-202!GO:0005737;cytoplasm;1.48493867903814e-190!GO:0044422;organelle part;5.19024868548818e-149!GO:0044446;intracellular organelle part;2.11580738921999e-147!GO:0044444;cytoplasmic part;3.82025349261718e-132!GO:0032991;macromolecular complex;5.27776895671312e-106!GO:0044237;cellular metabolic process;7.63138474893666e-89!GO:0044238;primary metabolic process;1.38047950928376e-87!GO:0030529;ribonucleoprotein complex;3.7567140772962e-86!GO:0005634;nucleus;1.41608082118251e-85!GO:0043170;macromolecule metabolic process;3.33999921260446e-81!GO:0044428;nuclear part;4.56320634102909e-78!GO:0005515;protein binding;4.82432759106941e-78!GO:0043233;organelle lumen;2.31379652402995e-77!GO:0031974;membrane-enclosed lumen;2.31379652402995e-77!GO:0003723;RNA binding;1.37352782906386e-74!GO:0005739;mitochondrion;3.59445928984521e-70!GO:0016043;cellular component organization and biogenesis;2.77700413423479e-55!GO:0043234;protein complex;6.83293177405884e-55!GO:0006412;translation;8.75211751859876e-55!GO:0005840;ribosome;1.23397095259787e-52!GO:0006396;RNA processing;4.82423542466264e-50!GO:0019538;protein metabolic process;3.28448056435615e-49!GO:0044429;mitochondrial part;2.94881271200234e-47!GO:0043283;biopolymer metabolic process;8.63982544543796e-47!GO:0031981;nuclear lumen;1.31595269522351e-46!GO:0031090;organelle membrane;4.27003039077139e-46!GO:0003735;structural constituent of ribosome;6.68178514876909e-46!GO:0010467;gene expression;1.58867929787057e-44!GO:0044267;cellular protein metabolic process;6.61716188857365e-44!GO:0044260;cellular macromolecule metabolic process;1.20777017924093e-43!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.63930582661154e-43!GO:0031967;organelle envelope;1.19858049356674e-42!GO:0031975;envelope;2.15699079039191e-42!GO:0044249;cellular biosynthetic process;1.82444336145377e-41!GO:0033036;macromolecule localization;3.04134537088366e-41!GO:0033279;ribosomal subunit;1.6581901301072e-40!GO:0015031;protein transport;2.40894853668171e-40!GO:0005829;cytosol;3.82830197115898e-39!GO:0009059;macromolecule biosynthetic process;4.14939612042975e-39!GO:0009058;biosynthetic process;9.32346012353851e-39!GO:0043228;non-membrane-bound organelle;1.90499313501295e-38!GO:0043232;intracellular non-membrane-bound organelle;1.90499313501295e-38!GO:0016071;mRNA metabolic process;7.66888592472159e-38!GO:0008104;protein localization;1.9119812023231e-37!GO:0045184;establishment of protein localization;8.72337174916589e-37!GO:0046907;intracellular transport;3.09233573719785e-36!GO:0008380;RNA splicing;4.23152835785242e-35!GO:0006996;organelle organization and biogenesis;8.09230736306578e-35!GO:0065003;macromolecular complex assembly;1.26737009884791e-34!GO:0006397;mRNA processing;9.30268553765538e-33!GO:0022607;cellular component assembly;1.80845240094743e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.77968491350718e-31!GO:0005740;mitochondrial envelope;1.73678387942941e-28!GO:0006886;intracellular protein transport;4.06978549952352e-28!GO:0003676;nucleic acid binding;5.20286268209708e-28!GO:0005654;nucleoplasm;5.53118991836226e-28!GO:0007049;cell cycle;8.17818181565744e-28!GO:0006259;DNA metabolic process;1.39378560188441e-27!GO:0019866;organelle inner membrane;1.92518445899027e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.11950598622933e-27!GO:0031966;mitochondrial membrane;1.53844762859171e-26!GO:0005743;mitochondrial inner membrane;6.3146151137825e-26!GO:0000166;nucleotide binding;8.03913384971027e-26!GO:0051649;establishment of cellular localization;3.8146055338431e-25!GO:0005681;spliceosome;4.41906164347593e-25!GO:0051641;cellular localization;7.11856449471541e-25!GO:0044445;cytosolic part;6.92342124824694e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.49056584074522e-24!GO:0016462;pyrophosphatase activity;9.42855494572526e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.40741852309906e-23!GO:0044451;nucleoplasm part;3.42214496730947e-23!GO:0017111;nucleoside-triphosphatase activity;3.60545834697741e-23!GO:0031980;mitochondrial lumen;2.60214663034584e-22!GO:0005759;mitochondrial matrix;2.60214663034584e-22!GO:0015934;large ribosomal subunit;1.64687072744911e-21!GO:0006119;oxidative phosphorylation;3.25466209008114e-21!GO:0022402;cell cycle process;5.6726168714889e-21!GO:0016070;RNA metabolic process;2.47982101987357e-20!GO:0015935;small ribosomal subunit;4.82998012652478e-20!GO:0005730;nucleolus;5.17312950289251e-20!GO:0016874;ligase activity;1.01175627205148e-19!GO:0006457;protein folding;1.28788091888816e-19!GO:0044455;mitochondrial membrane part;3.06586329637194e-19!GO:0032553;ribonucleotide binding;8.65110733490499e-19!GO:0032555;purine ribonucleotide binding;8.65110733490499e-19!GO:0012505;endomembrane system;2.35230980875443e-18!GO:0017076;purine nucleotide binding;4.51716101709434e-18!GO:0005783;endoplasmic reticulum;7.09887719088453e-18!GO:0000278;mitotic cell cycle;2.01808973997445e-17!GO:0006512;ubiquitin cycle;2.114833318365e-17!GO:0022618;protein-RNA complex assembly;2.13150402847261e-17!GO:0008135;translation factor activity, nucleic acid binding;4.39227823055253e-17!GO:0008134;transcription factor binding;4.55091712364076e-17!GO:0000502;proteasome complex (sensu Eukaryota);8.53771154963911e-17!GO:0006974;response to DNA damage stimulus;1.43148939795551e-16!GO:0043285;biopolymer catabolic process;1.70087528152174e-16!GO:0048770;pigment granule;2.75048821514954e-16!GO:0042470;melanosome;2.75048821514954e-16!GO:0005746;mitochondrial respiratory chain;3.64989577528826e-16!GO:0005761;mitochondrial ribosome;4.52040945715319e-16!GO:0000313;organellar ribosome;4.52040945715319e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.88146937332361e-16!GO:0005694;chromosome;6.41902882535665e-16!GO:0016192;vesicle-mediated transport;1.54460504955927e-15!GO:0042254;ribosome biogenesis and assembly;1.55688417754168e-15!GO:0012501;programmed cell death;2.1278481135944e-15!GO:0006915;apoptosis;2.89554250248661e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.93020042133701e-15!GO:0030163;protein catabolic process;4.7739046777421e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.10844183810325e-15!GO:0003954;NADH dehydrogenase activity;7.10844183810325e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.10844183810325e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;9.11732403929979e-15!GO:0006605;protein targeting;1.09195324008574e-14!GO:0051082;unfolded protein binding;1.14726491269247e-14!GO:0019941;modification-dependent protein catabolic process;1.60327603812792e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.60327603812792e-14!GO:0051186;cofactor metabolic process;1.82826325592189e-14!GO:0005635;nuclear envelope;2.50416244398116e-14!GO:0044257;cellular protein catabolic process;2.91866956366217e-14!GO:0044265;cellular macromolecule catabolic process;3.14628312332977e-14!GO:0009057;macromolecule catabolic process;3.41935749149725e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.75737321899879e-14!GO:0008219;cell death;4.21071518792004e-14!GO:0016265;death;4.21071518792004e-14!GO:0022403;cell cycle phase;6.31071287429746e-14!GO:0044427;chromosomal part;1.15153777943917e-13!GO:0031965;nuclear membrane;1.22835619229379e-13!GO:0044432;endoplasmic reticulum part;1.49285738923078e-13!GO:0006281;DNA repair;1.97562790923186e-13!GO:0006366;transcription from RNA polymerase II promoter;2.21683875181814e-13!GO:0005524;ATP binding;2.38751198531028e-13!GO:0032559;adenyl ribonucleotide binding;2.40284623361721e-13!GO:0048193;Golgi vesicle transport;2.71777402462161e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.40814150516818e-13!GO:0042775;organelle ATP synthesis coupled electron transport;9.7788019214563e-13!GO:0042773;ATP synthesis coupled electron transport;9.7788019214563e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.04708839711459e-12!GO:0045271;respiratory chain complex I;1.04708839711459e-12!GO:0005747;mitochondrial respiratory chain complex I;1.04708839711459e-12!GO:0005794;Golgi apparatus;1.17322158199994e-12!GO:0030554;adenyl nucleotide binding;1.25143501960231e-12!GO:0044453;nuclear membrane part;2.02805773950988e-12!GO:0051276;chromosome organization and biogenesis;2.37922196646894e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.7283071230774e-12!GO:0051301;cell division;3.73974454382599e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.87604138549141e-12!GO:0000087;M phase of mitotic cell cycle;4.9677360482863e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.12933467345432e-12!GO:0000375;RNA splicing, via transesterification reactions;5.12933467345432e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.12933467345432e-12!GO:0003743;translation initiation factor activity;5.56040758707571e-12!GO:0007067;mitosis;7.16937394125079e-12!GO:0016887;ATPase activity;8.63775181802952e-12!GO:0006913;nucleocytoplasmic transport;9.55646751079415e-12!GO:0006399;tRNA metabolic process;1.46225680321878e-11!GO:0051726;regulation of cell cycle;1.46225680321878e-11!GO:0006732;coenzyme metabolic process;1.53094012134106e-11!GO:0005643;nuclear pore;1.54031994796159e-11!GO:0042623;ATPase activity, coupled;1.79737449269986e-11!GO:0043412;biopolymer modification;1.79737449269986e-11!GO:0016604;nuclear body;1.83626798917233e-11!GO:0051169;nuclear transport;2.02374451852161e-11!GO:0000074;regulation of progression through cell cycle;2.31413898313039e-11!GO:0009719;response to endogenous stimulus;2.77250747107667e-11!GO:0006461;protein complex assembly;6.61577036817529e-11!GO:0009055;electron carrier activity;8.75742741353597e-11!GO:0044248;cellular catabolic process;1.09005633121024e-10!GO:0004386;helicase activity;1.32218225278635e-10!GO:0003712;transcription cofactor activity;1.69226783816586e-10!GO:0006260;DNA replication;2.8420129176593e-10!GO:0006413;translational initiation;3.76049911577234e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.18526720204103e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;4.85482570249091e-10!GO:0000279;M phase;5.39375144849176e-10!GO:0006364;rRNA processing;5.89056990068333e-10!GO:0065002;intracellular protein transport across a membrane;6.09230358015341e-10!GO:0009259;ribonucleotide metabolic process;6.23526754311926e-10!GO:0003924;GTPase activity;6.37956145020787e-10!GO:0005789;endoplasmic reticulum membrane;6.92870453074021e-10!GO:0006464;protein modification process;7.44180322579065e-10!GO:0006403;RNA localization;7.70571318578068e-10!GO:0050657;nucleic acid transport;7.70571318578068e-10!GO:0051236;establishment of RNA localization;7.70571318578068e-10!GO:0050658;RNA transport;7.70571318578068e-10!GO:0042981;regulation of apoptosis;8.75775269209526e-10!GO:0008565;protein transporter activity;9.46274411119582e-10!GO:0008026;ATP-dependent helicase activity;9.61227530428364e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.78810438454976e-10!GO:0004812;aminoacyl-tRNA ligase activity;9.78810438454976e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.78810438454976e-10!GO:0043067;regulation of programmed cell death;1.10043692818832e-09!GO:0016072;rRNA metabolic process;1.11736595729593e-09!GO:0008639;small protein conjugating enzyme activity;1.17964286214935e-09!GO:0016607;nuclear speck;1.30229873584595e-09!GO:0006323;DNA packaging;1.45894509312073e-09!GO:0006163;purine nucleotide metabolic process;1.68222535819003e-09!GO:0004842;ubiquitin-protein ligase activity;2.40678121470499e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.5324646451658e-09!GO:0006446;regulation of translational initiation;2.71885534898339e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.0620183263963e-09!GO:0043038;amino acid activation;3.28082426054023e-09!GO:0006418;tRNA aminoacylation for protein translation;3.28082426054023e-09!GO:0043039;tRNA aminoacylation;3.28082426054023e-09!GO:0050794;regulation of cellular process;3.40184990807779e-09!GO:0065004;protein-DNA complex assembly;4.07154613396563e-09!GO:0009150;purine ribonucleotide metabolic process;4.73212608300946e-09!GO:0017038;protein import;4.84179653443311e-09!GO:0005793;ER-Golgi intermediate compartment;5.30442517920084e-09!GO:0046930;pore complex;5.68303875212877e-09!GO:0009060;aerobic respiration;6.24606392021746e-09!GO:0009260;ribonucleotide biosynthetic process;6.65989597050194e-09!GO:0019787;small conjugating protein ligase activity;7.76631717652301e-09!GO:0006164;purine nucleotide biosynthetic process;8.13919794841407e-09!GO:0005768;endosome;9.33586515308634e-09!GO:0043623;cellular protein complex assembly;9.97877956018886e-09!GO:0015630;microtubule cytoskeleton;1.03166244622098e-08!GO:0043687;post-translational protein modification;1.12694853866385e-08!GO:0000785;chromatin;1.13855235757878e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.37867804384648e-08!GO:0007005;mitochondrion organization and biogenesis;1.39316432076837e-08!GO:0045333;cellular respiration;1.52565407728699e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.27603347197837e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.12571079099111e-08!GO:0006333;chromatin assembly or disassembly;3.56143189808557e-08!GO:0051188;cofactor biosynthetic process;3.88844291994449e-08!GO:0009141;nucleoside triphosphate metabolic process;4.36719269777331e-08!GO:0051028;mRNA transport;4.51074090459723e-08!GO:0005667;transcription factor complex;4.52862684220574e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.14059241278309e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.14059241278309e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.12355564652738e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.12355564652738e-08!GO:0005525;GTP binding;6.54358695970546e-08!GO:0015986;ATP synthesis coupled proton transport;7.27620565187018e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.27620565187018e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.93446194111139e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.19542369063378e-08!GO:0016881;acid-amino acid ligase activity;9.53824776814103e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.02402429617368e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.02402429617368e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.5877040831483e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.69783086375134e-07!GO:0051246;regulation of protein metabolic process;1.72807400351176e-07!GO:0019829;cation-transporting ATPase activity;2.003181624435e-07!GO:0048523;negative regulation of cellular process;2.50599412739145e-07!GO:0003697;single-stranded DNA binding;3.57654917790545e-07!GO:0051329;interphase of mitotic cell cycle;4.64379303597675e-07!GO:0051325;interphase;5.47729346132261e-07!GO:0043566;structure-specific DNA binding;6.02245571552646e-07!GO:0006099;tricarboxylic acid cycle;6.05602416217541e-07!GO:0046356;acetyl-CoA catabolic process;6.05602416217541e-07!GO:0046034;ATP metabolic process;7.5559946135109e-07!GO:0009056;catabolic process;8.30673917057116e-07!GO:0032561;guanyl ribonucleotide binding;1.10817715663099e-06!GO:0019001;guanyl nucleotide binding;1.10817715663099e-06!GO:0006754;ATP biosynthetic process;1.10862746923724e-06!GO:0006753;nucleoside phosphate metabolic process;1.10862746923724e-06!GO:0016563;transcription activator activity;1.11077983767735e-06!GO:0016779;nucleotidyltransferase activity;1.1290896385141e-06!GO:0016787;hydrolase activity;1.15067612920216e-06!GO:0004298;threonine endopeptidase activity;1.15450667187756e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.30912173389069e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.53922485808953e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.69434750541894e-06!GO:0006084;acetyl-CoA metabolic process;1.69551240508786e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.8593056108173e-06!GO:0050789;regulation of biological process;2.17595725820253e-06!GO:0032446;protein modification by small protein conjugation;2.18059387864192e-06!GO:0009117;nucleotide metabolic process;2.22699399295285e-06!GO:0009108;coenzyme biosynthetic process;2.27694501703438e-06!GO:0031988;membrane-bound vesicle;2.6575285844972e-06!GO:0000245;spliceosome assembly;2.76907581411761e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.7930318038232e-06!GO:0016568;chromatin modification;2.99327162132322e-06!GO:0051170;nuclear import;2.99725973314614e-06!GO:0016567;protein ubiquitination;3.00368712279292e-06!GO:0009109;coenzyme catabolic process;3.14643435219995e-06!GO:0030120;vesicle coat;3.22974264599784e-06!GO:0030662;coated vesicle membrane;3.22974264599784e-06!GO:0045786;negative regulation of progression through cell cycle;3.23506484310272e-06!GO:0006334;nucleosome assembly;3.25048741438314e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.28130020581745e-06!GO:0016564;transcription repressor activity;3.42871151939511e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.59486294607385e-06!GO:0045259;proton-transporting ATP synthase complex;4.56426389096291e-06!GO:0048475;coated membrane;4.56426389096291e-06!GO:0030117;membrane coat;4.56426389096291e-06!GO:0006752;group transfer coenzyme metabolic process;4.85990766329752e-06!GO:0005762;mitochondrial large ribosomal subunit;5.3710758196313e-06!GO:0000315;organellar large ribosomal subunit;5.3710758196313e-06!GO:0006606;protein import into nucleus;5.46728257437991e-06!GO:0048519;negative regulation of biological process;5.6159610784681e-06!GO:0003713;transcription coactivator activity;5.6159610784681e-06!GO:0006414;translational elongation;5.81651530849157e-06!GO:0005773;vacuole;7.48686599042851e-06!GO:0005819;spindle;7.68685166131225e-06!GO:0043069;negative regulation of programmed cell death;7.83539425408648e-06!GO:0031497;chromatin assembly;8.21112340423996e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.49077953936959e-06!GO:0048471;perinuclear region of cytoplasm;9.46301034630685e-06!GO:0051187;cofactor catabolic process;9.74007675457476e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.86620953811057e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.93336726158526e-06!GO:0000314;organellar small ribosomal subunit;9.95852696578521e-06!GO:0005763;mitochondrial small ribosomal subunit;9.95852696578521e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.04027791309011e-05!GO:0031324;negative regulation of cellular metabolic process;1.30269687446638e-05!GO:0043066;negative regulation of apoptosis;1.37414569716169e-05!GO:0000151;ubiquitin ligase complex;1.63340312480995e-05!GO:0003724;RNA helicase activity;1.677504349678e-05!GO:0008654;phospholipid biosynthetic process;1.97513096296318e-05!GO:0031982;vesicle;1.98612404768923e-05!GO:0005770;late endosome;2.14218965063924e-05!GO:0016853;isomerase activity;2.31778002781619e-05!GO:0044440;endosomal part;2.46468361765365e-05!GO:0010008;endosome membrane;2.46468361765365e-05!GO:0006613;cotranslational protein targeting to membrane;2.67227804994151e-05!GO:0005791;rough endoplasmic reticulum;2.85213415970067e-05!GO:0001558;regulation of cell growth;2.85439586498383e-05!GO:0005788;endoplasmic reticulum lumen;3.09674504309001e-05!GO:0000323;lytic vacuole;3.51192538031754e-05!GO:0005764;lysosome;3.51192538031754e-05!GO:0031410;cytoplasmic vesicle;3.70586710798567e-05!GO:0051168;nuclear export;4.07608476598301e-05!GO:0051427;hormone receptor binding;4.2083421709293e-05!GO:0045454;cell redox homeostasis;5.18831767076807e-05!GO:0007051;spindle organization and biogenesis;5.25126070063516e-05!GO:0005813;centrosome;5.40427242536588e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.53490984737635e-05!GO:0016740;transferase activity;5.5562303097663e-05!GO:0006916;anti-apoptosis;5.70844046321659e-05!GO:0019222;regulation of metabolic process;6.95905128825347e-05!GO:0005815;microtubule organizing center;7.17606140047925e-05!GO:0006261;DNA-dependent DNA replication;7.51030972976295e-05!GO:0044431;Golgi apparatus part;8.09689651218061e-05!GO:0035257;nuclear hormone receptor binding;8.2093064547143e-05!GO:0043021;ribonucleoprotein binding;9.16028581386811e-05!GO:0048522;positive regulation of cellular process;9.60802581797961e-05!GO:0015980;energy derivation by oxidation of organic compounds;9.70043519738569e-05!GO:0016044;membrane organization and biogenesis;9.86032801504473e-05!GO:0005798;Golgi-associated vesicle;0.000100752492732397!GO:0009892;negative regulation of metabolic process;0.000101868677355027!GO:0008361;regulation of cell size;0.00010717200725752!GO:0016363;nuclear matrix;0.000110764486055188!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000112841804790838!GO:0003899;DNA-directed RNA polymerase activity;0.000122673067786845!GO:0003714;transcription corepressor activity;0.000125315097216656!GO:0000775;chromosome, pericentric region;0.000125315097216656!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00013822247868141!GO:0006793;phosphorus metabolic process;0.000144758436125957!GO:0006796;phosphate metabolic process;0.000144758436125957!GO:0016859;cis-trans isomerase activity;0.00014717877108923!GO:0042802;identical protein binding;0.000147647706818613!GO:0043065;positive regulation of apoptosis;0.000148037817374172!GO:0006612;protein targeting to membrane;0.000159201951366968!GO:0007010;cytoskeleton organization and biogenesis;0.000170235518546914!GO:0030867;rough endoplasmic reticulum membrane;0.000175175539044191!GO:0016049;cell growth;0.000176873480422894!GO:0005657;replication fork;0.000191843215524606!GO:0043681;protein import into mitochondrion;0.000202768780923169!GO:0005769;early endosome;0.00020550087304405!GO:0043068;positive regulation of programmed cell death;0.000209791919239234!GO:0048468;cell development;0.000209791919239234!GO:0005905;coated pit;0.000212004032554246!GO:0045893;positive regulation of transcription, DNA-dependent;0.000225647843286353!GO:0000059;protein import into nucleus, docking;0.00022798821472875!GO:0031252;leading edge;0.000257861739098985!GO:0006626;protein targeting to mitochondrion;0.000267316756756356!GO:0045941;positive regulation of transcription;0.000280681412725344!GO:0016481;negative regulation of transcription;0.000285634138782274!GO:0005874;microtubule;0.000290684794930681!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000294348286401833!GO:0046474;glycerophospholipid biosynthetic process;0.000341308497953235!GO:0006839;mitochondrial transport;0.000357805299981047!GO:0003729;mRNA binding;0.000368728236701706!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000376076189075837!GO:0008186;RNA-dependent ATPase activity;0.000392740487182809!GO:0003690;double-stranded DNA binding;0.000429113785492484!GO:0003682;chromatin binding;0.000438020150615508!GO:0016310;phosphorylation;0.000476288424336638!GO:0000075;cell cycle checkpoint;0.000488248305727432!GO:0008033;tRNA processing;0.000511880048143258!GO:0005885;Arp2/3 protein complex;0.000513228336749501!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000548333196394246!GO:0006091;generation of precursor metabolites and energy;0.000550644852670595!GO:0003746;translation elongation factor activity;0.000607318086746172!GO:0033116;ER-Golgi intermediate compartment membrane;0.00061011524065982!GO:0000049;tRNA binding;0.0006267747692404!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000638000919817697!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000690557636394153!GO:0051789;response to protein stimulus;0.000713113770442803!GO:0006986;response to unfolded protein;0.000713113770442803!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000725653275619859!GO:0044452;nucleolar part;0.000734277649434608!GO:0008250;oligosaccharyl transferase complex;0.000765756867381339!GO:0008632;apoptotic program;0.000795504845304391!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000796509666214809!GO:0015631;tubulin binding;0.000835629998628886!GO:0016491;oxidoreductase activity;0.000857340505816027!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000919195492721329!GO:0015399;primary active transmembrane transporter activity;0.000919195492721329!GO:0043284;biopolymer biosynthetic process;0.000940887655622952!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000957847781929843!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000957847781929843!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000957847781929843!GO:0007017;microtubule-based process;0.000959837728766758!GO:0006383;transcription from RNA polymerase III promoter;0.000970366337516976!GO:0006650;glycerophospholipid metabolic process;0.00101700793385311!GO:0004576;oligosaccharyl transferase activity;0.00102059935452989!GO:0006402;mRNA catabolic process;0.00103534862837098!GO:0006352;transcription initiation;0.00108047287483375!GO:0005048;signal sequence binding;0.00109380742660306!GO:0004004;ATP-dependent RNA helicase activity;0.00111571511429259!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00119372304493738!GO:0008094;DNA-dependent ATPase activity;0.00119993657689951!GO:0035258;steroid hormone receptor binding;0.00125471590860701!GO:0000082;G1/S transition of mitotic cell cycle;0.00129362920527022!GO:0000139;Golgi membrane;0.00135038322476075!GO:0040008;regulation of growth;0.00137151085412224!GO:0046489;phosphoinositide biosynthetic process;0.00142559665969203!GO:0016197;endosome transport;0.00142682115003778!GO:0000776;kinetochore;0.00152006239829522!GO:0045045;secretory pathway;0.00153733341171818!GO:0030663;COPI coated vesicle membrane;0.0017435694080272!GO:0030126;COPI vesicle coat;0.0017435694080272!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00179483625338259!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.001826075864474!GO:0031968;organelle outer membrane;0.00183079930592616!GO:0003711;transcription elongation regulator activity;0.00184610524955418!GO:0006891;intra-Golgi vesicle-mediated transport;0.00184971440407792!GO:0030521;androgen receptor signaling pathway;0.00187474319669878!GO:0006302;double-strand break repair;0.00187474319669878!GO:0031072;heat shock protein binding;0.00195556792953364!GO:0019867;outer membrane;0.00195556792953364!GO:0050681;androgen receptor binding;0.00216412327997519!GO:0003684;damaged DNA binding;0.00219544197879286!GO:0000786;nucleosome;0.00220001806351022!GO:0051252;regulation of RNA metabolic process;0.0022282582012507!GO:0016272;prefoldin complex;0.0023360822814511!GO:0051052;regulation of DNA metabolic process;0.00246588531636749!GO:0031323;regulation of cellular metabolic process;0.002534147969933!GO:0019899;enzyme binding;0.00257365968902748!GO:0048487;beta-tubulin binding;0.00269156450824929!GO:0005741;mitochondrial outer membrane;0.00270113352268952!GO:0051087;chaperone binding;0.00280608030151793!GO:0008168;methyltransferase activity;0.00280608030151793!GO:0051920;peroxiredoxin activity;0.00294506579261098!GO:0016741;transferase activity, transferring one-carbon groups;0.00304031999874489!GO:0022890;inorganic cation transmembrane transporter activity;0.00309053715449562!GO:0006405;RNA export from nucleus;0.0032113142224049!GO:0006401;RNA catabolic process;0.00321772761048808!GO:0030384;phosphoinositide metabolic process;0.00323914664822518!GO:0065007;biological regulation;0.00331133205666141!GO:0009165;nucleotide biosynthetic process;0.00348478407416992!GO:0030137;COPI-coated vesicle;0.00363185534299429!GO:0045792;negative regulation of cell size;0.0036563768553407!GO:0006897;endocytosis;0.0039000792148374!GO:0010324;membrane invagination;0.0039000792148374!GO:0007243;protein kinase cascade;0.00405400008445859!GO:0003678;DNA helicase activity;0.00412913583574738!GO:0030133;transport vesicle;0.00420567117189938!GO:0008139;nuclear localization sequence binding;0.00456512710063537!GO:0030308;negative regulation of cell growth;0.00456512710063537!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00456512710063537!GO:0018196;peptidyl-asparagine modification;0.00456512710063537!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00456512710063537!GO:0048500;signal recognition particle;0.00457491606221035!GO:0009116;nucleoside metabolic process;0.00458010879157616!GO:0043488;regulation of mRNA stability;0.00484599599113004!GO:0043487;regulation of RNA stability;0.00484599599113004!GO:0031124;mRNA 3'-end processing;0.00489677553288899!GO:0030132;clathrin coat of coated pit;0.00491222058279087!GO:0051287;NAD binding;0.00528337257445982!GO:0008022;protein C-terminus binding;0.00533091125351658!GO:0015992;proton transport;0.00539473858820417!GO:0006818;hydrogen transport;0.00544619639496565!GO:0043022;ribosome binding;0.00544619639496565!GO:0019843;rRNA binding;0.00558418431099276!GO:0046983;protein dimerization activity;0.00595018769330322!GO:0007050;cell cycle arrest;0.00607044069920762!GO:0030880;RNA polymerase complex;0.00608158109816166!GO:0051059;NF-kappaB binding;0.00615289204050402!GO:0006417;regulation of translation;0.0061928323585132!GO:0007006;mitochondrial membrane organization and biogenesis;0.00623580110228299!GO:0007264;small GTPase mediated signal transduction;0.00629560282507191!GO:0030176;integral to endoplasmic reticulum membrane;0.00637586198470221!GO:0046467;membrane lipid biosynthetic process;0.00647075545322433!GO:0006350;transcription;0.00655785521932439!GO:0019752;carboxylic acid metabolic process;0.00663895832064064!GO:0008312;7S RNA binding;0.00693580747745883!GO:0030036;actin cytoskeleton organization and biogenesis;0.00726541518695439!GO:0031902;late endosome membrane;0.00727690530778724!GO:0006917;induction of apoptosis;0.00741962166921788!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00744380063238506!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00744380063238506!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00745698298750768!GO:0006378;mRNA polyadenylation;0.00760649850375906!GO:0006082;organic acid metabolic process;0.00763979925701451!GO:0048518;positive regulation of biological process;0.00770239071372926!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00778725562888699!GO:0045047;protein targeting to ER;0.00778725562888699!GO:0016251;general RNA polymerase II transcription factor activity;0.0081626363217557!GO:0046483;heterocycle metabolic process;0.00824255779959326!GO:0030118;clathrin coat;0.00832116108829314!GO:0007059;chromosome segregation;0.00862377970750037!GO:0005758;mitochondrial intermembrane space;0.00862377970750037!GO:0007052;mitotic spindle organization and biogenesis;0.00862377970750037!GO:0008637;apoptotic mitochondrial changes;0.00862377970750037!GO:0006506;GPI anchor biosynthetic process;0.00887575236168969!GO:0012502;induction of programmed cell death;0.0091852888176746!GO:0045926;negative regulation of growth;0.00931112399358176!GO:0007093;mitotic cell cycle checkpoint;0.00957829289470046!GO:0009112;nucleobase metabolic process;0.0096325403728632!GO:0005684;U2-dependent spliceosome;0.00966280100789497!GO:0008180;signalosome;0.0096690782417945!GO:0043492;ATPase activity, coupled to movement of substances;0.0100149786984922!GO:0003702;RNA polymerase II transcription factor activity;0.0100406767686054!GO:0043433;negative regulation of transcription factor activity;0.0100511003597123!GO:0031970;organelle envelope lumen;0.0102584019702253!GO:0005832;chaperonin-containing T-complex;0.0103198539725101!GO:0007088;regulation of mitosis;0.0105419723006469!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0106095705164467!GO:0006595;polyamine metabolic process;0.0109693633862262!GO:0008092;cytoskeletal protein binding;0.0112237451517319!GO:0045892;negative regulation of transcription, DNA-dependent;0.011237757616985!GO:0008629;induction of apoptosis by intracellular signals;0.011275679572751!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0113229609412903!GO:0000428;DNA-directed RNA polymerase complex;0.0113229609412903!GO:0003923;GPI-anchor transamidase activity;0.0119014661933626!GO:0016255;attachment of GPI anchor to protein;0.0119014661933626!GO:0042765;GPI-anchor transamidase complex;0.0119014661933626!GO:0006509;membrane protein ectodomain proteolysis;0.0119014661933626!GO:0033619;membrane protein proteolysis;0.0119014661933626!GO:0051540;metal cluster binding;0.0119014661933626!GO:0051536;iron-sulfur cluster binding;0.0119014661933626!GO:0065009;regulation of a molecular function;0.0121935948261732!GO:0006310;DNA recombination;0.0122339648278483!GO:0006505;GPI anchor metabolic process;0.0123280436739598!GO:0008234;cysteine-type peptidase activity;0.012430273283468!GO:0000339;RNA cap binding;0.0125333551635819!GO:0005869;dynactin complex;0.0126092624756833!GO:0042770;DNA damage response, signal transduction;0.0127134525631111!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0127418275270765!GO:0050662;coenzyme binding;0.0128370596866163!GO:0005876;spindle microtubule;0.0129622151152029!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0130778553021233!GO:0006611;protein export from nucleus;0.0131014752507333!GO:0030119;AP-type membrane coat adaptor complex;0.0133130418206031!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.013413991168618!GO:0006520;amino acid metabolic process;0.0138947187126134!GO:0000096;sulfur amino acid metabolic process;0.0144901107633763!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0147406616209798!GO:0009081;branched chain family amino acid metabolic process;0.0148538604734672!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0151016053312692!GO:0006518;peptide metabolic process;0.0151554944837923!GO:0030518;steroid hormone receptor signaling pathway;0.0153496407168609!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0159947341108435!GO:0050811;GABA receptor binding;0.016063067301758!GO:0031326;regulation of cellular biosynthetic process;0.0162186190276691!GO:0016584;nucleosome positioning;0.0165630700915095!GO:0031123;RNA 3'-end processing;0.0166583429646685!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0168667598963037!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.017164637197907!GO:0015002;heme-copper terminal oxidase activity;0.017164637197907!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.017164637197907!GO:0004129;cytochrome-c oxidase activity;0.017164637197907!GO:0008538;proteasome activator activity;0.0175930785291614!GO:0043596;nuclear replication fork;0.0175982001893!GO:0051101;regulation of DNA binding;0.0178756859434715!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0182784055809712!GO:0051539;4 iron, 4 sulfur cluster binding;0.018554423984992!GO:0010468;regulation of gene expression;0.0189279232452717!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0190327169302349!GO:0030027;lamellipodium;0.0192514698339026!GO:0032508;DNA duplex unwinding;0.0192649077617779!GO:0032392;DNA geometric change;0.0192649077617779!GO:0000086;G2/M transition of mitotic cell cycle;0.0194313586277898!GO:0004527;exonuclease activity;0.0197330159043047!GO:0005637;nuclear inner membrane;0.0202384039697591!GO:0006497;protein amino acid lipidation;0.0203388905374899!GO:0044262;cellular carbohydrate metabolic process;0.0206769533129384!GO:0006144;purine base metabolic process;0.0207208865190602!GO:0005669;transcription factor TFIID complex;0.0208336003475507!GO:0006289;nucleotide-excision repair;0.021050643898554!GO:0006892;post-Golgi vesicle-mediated transport;0.0216751105512744!GO:0006284;base-excision repair;0.0218043334363003!GO:0000228;nuclear chromosome;0.0221757685449769!GO:0001889;liver development;0.0224509514321305!GO:0006338;chromatin remodeling;0.0234513368468396!GO:0043189;H4/H2A histone acetyltransferase complex;0.0234961358259294!GO:0030658;transport vesicle membrane;0.0237052977946587!GO:0008017;microtubule binding;0.0246136199760146!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0247880086449311!GO:0007040;lysosome organization and biogenesis;0.0249273544451117!GO:0030131;clathrin adaptor complex;0.0251695618125203!GO:0006376;mRNA splice site selection;0.0255207155912277!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0255207155912277!GO:0007034;vacuolar transport;0.0258833690350154!GO:0051098;regulation of binding;0.026583855443892!GO:0031625;ubiquitin protein ligase binding;0.0268635922476186!GO:0045936;negative regulation of phosphate metabolic process;0.0269814211480511!GO:0001836;release of cytochrome c from mitochondria;0.0272448732478301!GO:0005774;vacuolar membrane;0.0272568256650741!GO:0030659;cytoplasmic vesicle membrane;0.0274998296160506!GO:0047485;protein N-terminus binding;0.0280424935917441!GO:0006672;ceramide metabolic process;0.0290559500498121!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0292664513594668!GO:0009119;ribonucleoside metabolic process;0.0292948900932027!GO:0006643;membrane lipid metabolic process;0.0296115628069384!GO:0043154;negative regulation of caspase activity;0.03008377587989!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.03008377587989!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0302296909840899!GO:0030125;clathrin vesicle coat;0.0303860822410432!GO:0030665;clathrin coated vesicle membrane;0.0303860822410432!GO:0004197;cysteine-type endopeptidase activity;0.0305505538156896!GO:0006779;porphyrin biosynthetic process;0.0305505538156896!GO:0033014;tetrapyrrole biosynthetic process;0.0305505538156896!GO:0000178;exosome (RNase complex);0.0308177964738482!GO:0009889;regulation of biosynthetic process;0.0309748752740328!GO:0042982;amyloid precursor protein metabolic process;0.0309748752740328!GO:0006740;NADPH regeneration;0.0309879696338287!GO:0006098;pentose-phosphate shunt;0.0309879696338287!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0317572288613013!GO:0055083;monovalent inorganic anion homeostasis;0.0317572288613013!GO:0055064;chloride ion homeostasis;0.0317572288613013!GO:0030644;cellular chloride ion homeostasis;0.0317572288613013!GO:0006607;NLS-bearing substrate import into nucleus;0.0319042120283121!GO:0032984;macromolecular complex disassembly;0.0319060699536466!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0328596783293851!GO:0032940;secretion by cell;0.033143129948751!GO:0006400;tRNA modification;0.0334207691416353!GO:0006268;DNA unwinding during replication;0.0341567938952151!GO:0040029;regulation of gene expression, epigenetic;0.0344080639441562!GO:0000118;histone deacetylase complex;0.0344318139041058!GO:0009451;RNA modification;0.034531769853822!GO:0033673;negative regulation of kinase activity;0.0346621625516644!GO:0006469;negative regulation of protein kinase activity;0.0346621625516644!GO:0006541;glutamine metabolic process;0.0351130566294961!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0353673127022835!GO:0012506;vesicle membrane;0.0357396757328648!GO:0035267;NuA4 histone acetyltransferase complex;0.0369230552982869!GO:0005862;muscle thin filament tropomyosin;0.0371416954161957!GO:0031371;ubiquitin conjugating enzyme complex;0.0372623158881415!GO:0004177;aminopeptidase activity;0.0375220122122747!GO:0030029;actin filament-based process;0.0375220122122747!GO:0008408;3'-5' exonuclease activity;0.0380772546131258!GO:0044433;cytoplasmic vesicle part;0.0382274196320607!GO:0043130;ubiquitin binding;0.038372319653472!GO:0032182;small conjugating protein binding;0.038372319653472!GO:0007021;tubulin folding;0.0384462876546202!GO:0017166;vinculin binding;0.0386221534074329!GO:0022411;cellular component disassembly;0.0393553998290241!GO:0009083;branched chain family amino acid catabolic process;0.0397676471426531!GO:0046982;protein heterodimerization activity;0.0400783957287946!GO:0031901;early endosome membrane;0.040298770722693!GO:0004532;exoribonuclease activity;0.0406144284911398!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0406144284911398!GO:0008426;protein kinase C inhibitor activity;0.0409114876507346!GO:0030660;Golgi-associated vesicle membrane;0.0411028587775988!GO:0030032;lamellipodium biogenesis;0.0412540255912298!GO:0009303;rRNA transcription;0.041279108013436!GO:0042158;lipoprotein biosynthetic process;0.0415675107099891!GO:0008652;amino acid biosynthetic process;0.0419321610136201!GO:0008320;protein transmembrane transporter activity;0.0419321610136201!GO:0043624;cellular protein complex disassembly;0.0421427005403054!GO:0022884;macromolecule transmembrane transporter activity;0.0421427005403054!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0421427005403054!GO:0009967;positive regulation of signal transduction;0.0421847841114519!GO:0032259;methylation;0.0421847841114519!GO:0030508;thiol-disulfide exchange intermediate activity;0.0422102389643942!GO:0006778;porphyrin metabolic process;0.0422859399606318!GO:0033013;tetrapyrrole metabolic process;0.0422859399606318!GO:0008097;5S rRNA binding;0.0423116298670187!GO:0006644;phospholipid metabolic process;0.042393233799!GO:0004003;ATP-dependent DNA helicase activity;0.042594192203033!GO:0016408;C-acyltransferase activity;0.0428089481313865!GO:0030911;TPR domain binding;0.0433515495610998!GO:0050435;beta-amyloid metabolic process;0.0433835106797559!GO:0016860;intramolecular oxidoreductase activity;0.0443228442710353!GO:0043631;RNA polyadenylation;0.04492322349815!GO:0046519;sphingoid metabolic process;0.0449699512795864!GO:0017134;fibroblast growth factor binding;0.0449773969452124!GO:0003725;double-stranded RNA binding;0.0452260104958066!GO:0003756;protein disulfide isomerase activity;0.0452369811504146!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0452369811504146!GO:0005784;translocon complex;0.0460081189734283!GO:0007033;vacuole organization and biogenesis;0.0469644321422559!GO:0009893;positive regulation of metabolic process;0.0470939662039909!GO:0046966;thyroid hormone receptor binding;0.0491579946785902!GO:0043241;protein complex disassembly;0.0495704470030683 | |||
|sample_id=10614 | |sample_id=10614 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=stomach | |sample_tissue=stomach | ||
|top_motifs=bHLH_family:1.98943527585;FOXM1:1.78738261314;BPTF:1.22102914707;PPARG:1.20865318948;ELK1,4_GABP{A,B1}:1.15919530406;TEF:1.06581687462;UFEwm:1.0409697915;RBPJ:0.990770183954;AIRE:0.955792925584;TBX4,5:0.931028809271;SNAI1..3:0.918776646226;TP53:0.867706145968;HSF1,2:0.847875626735;HOX{A6,A7,B6,B7}:0.778339765277;SP1:0.728701207614;ZEB1:0.717005757693;GCM1,2:0.714733158849;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.586976416793;ZNF143:0.536468727551;ZBTB16:0.530066173381;IRF7:0.528714639802;ZNF148:0.512830195938;MYOD1:0.488856304459;ARID5B:0.481947212111;IRF1,2:0.477412191836;TBP:0.466898630356;RXR{A,B,G}:0.438003021885;POU6F1:0.418102650262;HOXA9_MEIS1:0.400516318735;ONECUT1,2:0.393182585203;IKZF2:0.387526553083;HES1:0.355826521261;TEAD1:0.348798985136;CDC5L:0.340836186694;EGR1..3:0.31563215683;NKX2-1,4:0.30275267797;TFAP2{A,C}:0.283893705718;E2F1..5:0.255785831026;PAX8:0.250993399711;CDX1,2,4:0.239432020173;IKZF1:0.233571809427;FOXQ1:0.232057911659;ZNF423:0.220307511104;TFAP2B:0.188619552388;GFI1:0.17239292156;PAX2:0.167601270485;ZNF384:0.159566731729;SPZ1:0.158953210003;RFX1:0.142892476891;GTF2A1,2:0.124488069792;MTF1:0.118299258996;XCPE1{core}:0.108885550288;LMO2:0.101775209533;HOX{A4,D4}:0.0972319181412;RREB1:0.0895140174214;EVI1:0.0888533741372;NFY{A,B,C}:0.0726401597007;YY1:0.0667134156744;FOX{D1,D2}:0.0640947394499;TLX1..3_NFIC{dimer}:0.0514983594194;SOX5:0.0504765928622;MED-1{core}:0.0362594342617;ATF4:0.0315321532756;ESR1:0.029221442197;ALX1:0.0276084804007;GATA4:0.00503727166615;NR5A1,2:-0.00869442045471;TFDP1:-0.0406832799893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0407474030041;RORA:-0.0431192100346;NRF1:-0.0605454100639;HIF1A:-0.0616932220067;ZIC1..3:-0.0626221736363;MYBL2:-0.0653897856758;ZBTB6:-0.0690198385521;REST:-0.0737451642429;HNF1A:-0.0776757592836;HNF4A_NR2F1,2:-0.0869107751916;RXRA_VDR{dimer}:-0.10516221742;NKX3-1:-0.108502722968;ESRRA:-0.108775508397;GLI1..3:-0.1115663927;MTE{core}:-0.129943017568;RFX2..5_RFXANK_RFXAP:-0.175647905226;AHR_ARNT_ARNT2:-0.187648043132;EP300:-0.189832461578;NR1H4:-0.198144296551;PAX5:-0.198858301269;PITX1..3:-0.201527061448;POU2F1..3:-0.204080169424;TOPORS:-0.204746401967;FOXN1:-0.210354192564;FOXP1:-0.217889301854;FOS_FOS{B,L1}_JUN{B,D}:-0.222025527745;BACH2:-0.225422778834;ZFP161:-0.23367902796;HMX1:-0.237289415103;STAT1,3:-0.241169575967;NR6A1:-0.241911792071;SOX2:-0.250731424322;TFCP2:-0.255926068681;POU1F1:-0.257880408195;SMAD1..7,9:-0.27748966008;HLF:-0.27919739495;ALX4:-0.284970849387;SOX{8,9,10}:-0.288166125991;NFE2L2:-0.301784082768;HIC1:-0.31081270738;NFIL3:-0.328224841802;NKX6-1,2:-0.329083356348;FOSL2:-0.33524955415;NFE2L1:-0.339446677953;NHLH1,2:-0.352380916584;KLF4:-0.353810537718;CEBPA,B_DDIT3:-0.359525375118;PAX3,7:-0.374368351391;PRRX1,2:-0.375433992045;SOX17:-0.377431822072;GTF2I:-0.389530181757;LHX3,4:-0.389700929534;NFKB1_REL_RELA:-0.391928522431;CUX2:-0.409425898112;MEF2{A,B,C,D}:-0.420341669771;NKX2-3_NKX2-5:-0.422163650208;PAX4:-0.431268991412;EBF1:-0.434900485871;OCT4_SOX2{dimer}:-0.441509533424;ATF5_CREB3:-0.44318779552;AR:-0.44627733228;NKX3-2:-0.447517907681;FOX{I1,J2}:-0.449277087668;ELF1,2,4:-0.451636200822;FOX{F1,F2,J1}:-0.454922856243;MYB:-0.456844744184;ADNP_IRX_SIX_ZHX:-0.463718408353;SPI1:-0.464394949425;STAT2,4,6:-0.467494579329;PRDM1:-0.468567758834;FOXD3:-0.475404788331;NFIX:-0.480599600625;HOX{A5,B5}:-0.481621855165;PDX1:-0.487928844622;FOXA2:-0.505611774583;SREBF1,2:-0.505632364864;PATZ1:-0.520087144957;BREu{core}:-0.520444227492;FOXL1:-0.520475745998;NKX2-2,8:-0.536138070561;MAZ:-0.538531081141;MYFfamily:-0.544783161207;SPIB:-0.586151698725;ATF2:-0.593559789293;FOXP3:-0.595681411991;NFE2:-0.597291801755;TFAP4:-0.597508779242;GFI1B:-0.614699883114;HMGA1,2:-0.624156754357;FOXO1,3,4:-0.633248582949;NR3C1:-0.649928367143;EN1,2:-0.657530263555;GATA6:-0.657621778994;RUNX1..3:-0.66380748252;TLX2:-0.697124377251;POU5F1:-0.713172136687;LEF1_TCF7_TCF7L1,2:-0.744551124128;MZF1:-0.772941828891;PAX1,9:-0.783590285545;XBP1:-0.785388251705;JUN:-0.797615893641;STAT5{A,B}:-0.828087121237;CREB1:-0.83941416578;T:-0.848391486712;ETS1,2:-0.848505898431;TAL1_TCF{3,4,12}:-0.872216031173;ATF6:-0.887927360623;CRX:-0.892655294227;SRF:-1.00603547173;MAFB:-1.01622454701;PBX1:-1.02526586264;VSX1,2:-1.03040096452;POU3F1..4:-1.04090452812;GZF1:-1.08558500338;NANOG{mouse}:-1.12528751909;NFATC1..3:-1.14924981448;TGIF1:-1.17169069045;PAX6:-1.19411191806;DBP:-1.29097786669;DMAP1_NCOR{1,2}_SMARC:-1.32819253541;NANOG:-1.36323848812;HAND1,2:-1.52665476114;ZNF238:-1.58267125966;HBP1_HMGB_SSRP1_UBTF:-2.26861890912 | |top_motifs=bHLH_family:1.98943527585;FOXM1:1.78738261314;BPTF:1.22102914707;PPARG:1.20865318948;ELK1,4_GABP{A,B1}:1.15919530406;TEF:1.06581687462;UFEwm:1.0409697915;RBPJ:0.990770183954;AIRE:0.955792925584;TBX4,5:0.931028809271;SNAI1..3:0.918776646226;TP53:0.867706145968;HSF1,2:0.847875626735;HOX{A6,A7,B6,B7}:0.778339765277;SP1:0.728701207614;ZEB1:0.717005757693;GCM1,2:0.714733158849;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.586976416793;ZNF143:0.536468727551;ZBTB16:0.530066173381;IRF7:0.528714639802;ZNF148:0.512830195938;MYOD1:0.488856304459;ARID5B:0.481947212111;IRF1,2:0.477412191836;TBP:0.466898630356;RXR{A,B,G}:0.438003021885;POU6F1:0.418102650262;HOXA9_MEIS1:0.400516318735;ONECUT1,2:0.393182585203;IKZF2:0.387526553083;HES1:0.355826521261;TEAD1:0.348798985136;CDC5L:0.340836186694;EGR1..3:0.31563215683;NKX2-1,4:0.30275267797;TFAP2{A,C}:0.283893705718;E2F1..5:0.255785831026;PAX8:0.250993399711;CDX1,2,4:0.239432020173;IKZF1:0.233571809427;FOXQ1:0.232057911659;ZNF423:0.220307511104;TFAP2B:0.188619552388;GFI1:0.17239292156;PAX2:0.167601270485;ZNF384:0.159566731729;SPZ1:0.158953210003;RFX1:0.142892476891;GTF2A1,2:0.124488069792;MTF1:0.118299258996;XCPE1{core}:0.108885550288;LMO2:0.101775209533;HOX{A4,D4}:0.0972319181412;RREB1:0.0895140174214;EVI1:0.0888533741372;NFY{A,B,C}:0.0726401597007;YY1:0.0667134156744;FOX{D1,D2}:0.0640947394499;TLX1..3_NFIC{dimer}:0.0514983594194;SOX5:0.0504765928622;MED-1{core}:0.0362594342617;ATF4:0.0315321532756;ESR1:0.029221442197;ALX1:0.0276084804007;GATA4:0.00503727166615;NR5A1,2:-0.00869442045471;TFDP1:-0.0406832799893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0407474030041;RORA:-0.0431192100346;NRF1:-0.0605454100639;HIF1A:-0.0616932220067;ZIC1..3:-0.0626221736363;MYBL2:-0.0653897856758;ZBTB6:-0.0690198385521;REST:-0.0737451642429;HNF1A:-0.0776757592836;HNF4A_NR2F1,2:-0.0869107751916;RXRA_VDR{dimer}:-0.10516221742;NKX3-1:-0.108502722968;ESRRA:-0.108775508397;GLI1..3:-0.1115663927;MTE{core}:-0.129943017568;RFX2..5_RFXANK_RFXAP:-0.175647905226;AHR_ARNT_ARNT2:-0.187648043132;EP300:-0.189832461578;NR1H4:-0.198144296551;PAX5:-0.198858301269;PITX1..3:-0.201527061448;POU2F1..3:-0.204080169424;TOPORS:-0.204746401967;FOXN1:-0.210354192564;FOXP1:-0.217889301854;FOS_FOS{B,L1}_JUN{B,D}:-0.222025527745;BACH2:-0.225422778834;ZFP161:-0.23367902796;HMX1:-0.237289415103;STAT1,3:-0.241169575967;NR6A1:-0.241911792071;SOX2:-0.250731424322;TFCP2:-0.255926068681;POU1F1:-0.257880408195;SMAD1..7,9:-0.27748966008;HLF:-0.27919739495;ALX4:-0.284970849387;SOX{8,9,10}:-0.288166125991;NFE2L2:-0.301784082768;HIC1:-0.31081270738;NFIL3:-0.328224841802;NKX6-1,2:-0.329083356348;FOSL2:-0.33524955415;NFE2L1:-0.339446677953;NHLH1,2:-0.352380916584;KLF4:-0.353810537718;CEBPA,B_DDIT3:-0.359525375118;PAX3,7:-0.374368351391;PRRX1,2:-0.375433992045;SOX17:-0.377431822072;GTF2I:-0.389530181757;LHX3,4:-0.389700929534;NFKB1_REL_RELA:-0.391928522431;CUX2:-0.409425898112;MEF2{A,B,C,D}:-0.420341669771;NKX2-3_NKX2-5:-0.422163650208;PAX4:-0.431268991412;EBF1:-0.434900485871;OCT4_SOX2{dimer}:-0.441509533424;ATF5_CREB3:-0.44318779552;AR:-0.44627733228;NKX3-2:-0.447517907681;FOX{I1,J2}:-0.449277087668;ELF1,2,4:-0.451636200822;FOX{F1,F2,J1}:-0.454922856243;MYB:-0.456844744184;ADNP_IRX_SIX_ZHX:-0.463718408353;SPI1:-0.464394949425;STAT2,4,6:-0.467494579329;PRDM1:-0.468567758834;FOXD3:-0.475404788331;NFIX:-0.480599600625;HOX{A5,B5}:-0.481621855165;PDX1:-0.487928844622;FOXA2:-0.505611774583;SREBF1,2:-0.505632364864;PATZ1:-0.520087144957;BREu{core}:-0.520444227492;FOXL1:-0.520475745998;NKX2-2,8:-0.536138070561;MAZ:-0.538531081141;MYFfamily:-0.544783161207;SPIB:-0.586151698725;ATF2:-0.593559789293;FOXP3:-0.595681411991;NFE2:-0.597291801755;TFAP4:-0.597508779242;GFI1B:-0.614699883114;HMGA1,2:-0.624156754357;FOXO1,3,4:-0.633248582949;NR3C1:-0.649928367143;EN1,2:-0.657530263555;GATA6:-0.657621778994;RUNX1..3:-0.66380748252;TLX2:-0.697124377251;POU5F1:-0.713172136687;LEF1_TCF7_TCF7L1,2:-0.744551124128;MZF1:-0.772941828891;PAX1,9:-0.783590285545;XBP1:-0.785388251705;JUN:-0.797615893641;STAT5{A,B}:-0.828087121237;CREB1:-0.83941416578;T:-0.848391486712;ETS1,2:-0.848505898431;TAL1_TCF{3,4,12}:-0.872216031173;ATF6:-0.887927360623;CRX:-0.892655294227;SRF:-1.00603547173;MAFB:-1.01622454701;PBX1:-1.02526586264;VSX1,2:-1.03040096452;POU3F1..4:-1.04090452812;GZF1:-1.08558500338;NANOG{mouse}:-1.12528751909;NFATC1..3:-1.14924981448;TGIF1:-1.17169069045;PAX6:-1.19411191806;DBP:-1.29097786669;DMAP1_NCOR{1,2}_SMARC:-1.32819253541;NANOG:-1.36323848812;HAND1,2:-1.52665476114;ZNF238:-1.58267125966;HBP1_HMGB_SSRP1_UBTF:-2.26861890912 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10614-108G2;search_select_hide=table117:FF:10614-108G2 | |||
}} | }} | ||
Latest revision as of 14:31, 3 June 2020
| Name: | gastric adenocarcinoma cell line:MKN1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11737 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11737
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11737
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.968 |
| 10 | 10 | 0.74 |
| 100 | 100 | 0.186 |
| 101 | 101 | 0.134 |
| 102 | 102 | 0.52 |
| 103 | 103 | 0.555 |
| 104 | 104 | 0.883 |
| 105 | 105 | 0.59 |
| 106 | 106 | 0.586 |
| 107 | 107 | 0.175 |
| 108 | 108 | 0.272 |
| 109 | 109 | 0.0464 |
| 11 | 11 | 0.274 |
| 110 | 110 | 0.437 |
| 111 | 111 | 0.315 |
| 112 | 112 | 0.351 |
| 113 | 113 | 9.21012e-5 |
| 114 | 114 | 0.358 |
| 115 | 115 | 0.114 |
| 116 | 116 | 0.627 |
| 117 | 117 | 0.398 |
| 118 | 118 | 0.289 |
| 119 | 119 | 0.509 |
| 12 | 12 | 0.118 |
| 120 | 120 | 0.358 |
| 121 | 121 | 0.937 |
| 122 | 122 | 0.783 |
| 123 | 123 | 0.0173 |
| 124 | 124 | 0.0534 |
| 125 | 125 | 0.11 |
| 126 | 126 | 0.302 |
| 127 | 127 | 0.49 |
| 128 | 128 | 0.0124 |
| 129 | 129 | 0.266 |
| 13 | 13 | 0.227 |
| 130 | 130 | 0.533 |
| 131 | 131 | 0.0243 |
| 132 | 132 | 0.326 |
| 133 | 133 | 0.255 |
| 134 | 134 | 0.143 |
| 135 | 135 | 0.0619 |
| 136 | 136 | 0.00684 |
| 137 | 137 | 0.00738 |
| 138 | 138 | 0.432 |
| 139 | 139 | 0.828 |
| 14 | 14 | 0.127 |
| 140 | 140 | 0.533 |
| 141 | 141 | 0.639 |
| 142 | 142 | 0.562 |
| 143 | 143 | 0.422 |
| 144 | 144 | 0.922 |
| 145 | 145 | 0.142 |
| 146 | 146 | 0.418 |
| 147 | 147 | 0.992 |
| 148 | 148 | 0.478 |
| 149 | 149 | 0.561 |
| 15 | 15 | 0.52 |
| 150 | 150 | 0.441 |
| 151 | 151 | 0.635 |
| 152 | 152 | 0.0368 |
| 153 | 153 | 0.0506 |
| 154 | 154 | 0.31 |
| 155 | 155 | 0.219 |
| 156 | 156 | 0.754 |
| 157 | 157 | 0.854 |
| 158 | 158 | 0.333 |
| 159 | 159 | 0.123 |
| 16 | 16 | 0.72 |
| 160 | 160 | 0.597 |
| 161 | 161 | 0.372 |
| 162 | 162 | 0.577 |
| 163 | 163 | 0.807 |
| 164 | 164 | 0.732 |
| 165 | 165 | 0.837 |
| 166 | 166 | 0.432 |
| 167 | 167 | 0.519 |
| 168 | 168 | 0.961 |
| 169 | 169 | 0.156 |
| 17 | 17 | 0.934 |
| 18 | 18 | 0.984 |
| 19 | 19 | 0.406 |
| 2 | 2 | 0.471 |
| 20 | 20 | 0.486 |
| 21 | 21 | 0.343 |
| 22 | 22 | 0.976 |
| 23 | 23 | 0.18 |
| 24 | 24 | 0.595 |
| 25 | 25 | 0.951 |
| 26 | 26 | 0.331 |
| 27 | 27 | 0.521 |
| 28 | 28 | 0.718 |
| 29 | 29 | 0.0171 |
| 3 | 3 | 0.406 |
| 30 | 30 | 0.944 |
| 31 | 31 | 0.276 |
| 32 | 32 | 0.201 |
| 33 | 33 | 0.235 |
| 34 | 34 | 0.207 |
| 35 | 35 | 0.133 |
| 36 | 36 | 0.146 |
| 37 | 37 | 0.0469 |
| 38 | 38 | 0.888 |
| 39 | 39 | 0.675 |
| 4 | 4 | 0.523 |
| 40 | 40 | 0.885 |
| 41 | 41 | 0.015 |
| 42 | 42 | 0.359 |
| 43 | 43 | 0.458 |
| 44 | 44 | 0.0549 |
| 45 | 45 | 0.87 |
| 46 | 46 | 0.545 |
| 47 | 47 | 0.979 |
| 48 | 48 | 0.877 |
| 49 | 49 | 0.303 |
| 5 | 5 | 0.253 |
| 50 | 50 | 0.977 |
| 51 | 51 | 0.847 |
| 52 | 52 | 0.169 |
| 53 | 53 | 0.0879 |
| 54 | 54 | 0.604 |
| 55 | 55 | 0.0873 |
| 56 | 56 | 0.973 |
| 57 | 57 | 0.7 |
| 58 | 58 | 0.493 |
| 59 | 59 | 0.467 |
| 6 | 6 | 0.425 |
| 60 | 60 | 0.523 |
| 61 | 61 | 0.347 |
| 62 | 62 | 0.634 |
| 63 | 63 | 0.772 |
| 64 | 64 | 0.809 |
| 65 | 65 | 0.989 |
| 66 | 66 | 0.34 |
| 67 | 67 | 0.953 |
| 68 | 68 | 0.534 |
| 69 | 69 | 0.235 |
| 7 | 7 | 0.69 |
| 70 | 70 | 0.648 |
| 71 | 71 | 0.506 |
| 72 | 72 | 0.364 |
| 73 | 73 | 0.00622 |
| 74 | 74 | 0.271 |
| 75 | 75 | 0.0782 |
| 76 | 76 | 0.0936 |
| 77 | 77 | 0.743 |
| 78 | 78 | 0.654 |
| 79 | 79 | 0.981 |
| 8 | 8 | 0.541 |
| 80 | 80 | 0.113 |
| 81 | 81 | 0.219 |
| 82 | 82 | 0.722 |
| 83 | 83 | 0.453 |
| 84 | 84 | 0.112 |
| 85 | 85 | 0.442 |
| 86 | 86 | 0.078 |
| 87 | 87 | 0.811 |
| 88 | 88 | 0.947 |
| 89 | 89 | 0.247 |
| 9 | 9 | 0.233 |
| 90 | 90 | 0.124 |
| 91 | 91 | 0.184 |
| 92 | 92 | 0.0862 |
| 93 | 93 | 0.53 |
| 94 | 94 | 0.138 |
| 95 | 95 | 0.4 |
| 96 | 96 | 0.424 |
| 97 | 97 | 0.742 |
| 98 | 98 | 0.399 |
| 99 | 99 | 0.394 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11737
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102384 MKN-1 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100787 (gastric cancer cell line sample)
0102380 (gastric adenocarcinoma cell line sample)
0102384 (MKN-1 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
