FF:10686-109F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005109 | ||
|accession_numbers=CAGE;DRX007836;DRR008708;DRZ000133;DRZ001518;DRZ011483;DRZ012868 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0007195,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0103296 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0103296 | |fonse_cell_line=FF:0103296 | ||
|fonse_cell_line_closure=FF:0103296 | |fonse_cell_line_closure=FF:0103296 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bone%2520marrow%2520stromal%2520cell%2520line%253aStromaNKtert.CNhs11931.10686-109F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10686-109F2 | |id=FF:10686-109F2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103296 | ||
|is_obsolete= | |||
|library_id=CNhs11931 | |||
|library_id_phase_based=2:CNhs11931 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10686 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10686 | |||
|name=bone marrow stromal cell line:StromaNKtert | |name=bone marrow stromal cell line:StromaNKtert | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11931,LSID835,release010,COMPLETED | |profile_hcage=CNhs11931,LSID835,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.474881314700062,-0.282403560576942,0,0,0,0.232409656693218,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.324564326194432,0,0.270495067592064,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.324564326194432,0.227571964951827,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574629426471636,0,0,0,-0.142037172859163,0.0429152187649922,0,0.324564326194432,0,0.324564326194432,-0.0980353512377064,0.186087125393537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,0.137136044866704,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.324564326194432,0,0,0.508225242921722,0,0,0,0.324564326194432,0,0,0.0773854509088674,0,-0.474086218752008,-0.143515142523472,0,0,0.0703401185498835,0,0,0,0,0,0,0,0.508225242921722,0,0.196444459241867,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,0.439880981844354,0,0,0,0,-0.107958506237108,0,-0.120879483793741,-0.0827201683234173,0.41528831181734,0.0595591244082883,0.166028126596988,0,0,0,-0.702738522898891,0.0231057184796801,0,0,0.132332769708987,0.186668449378109,0,0,0.245855318368512,0,-0.26447218369758,0.341871922550602,0,-0.137742679930476,0,0,0,0,0,0,0,0,0,0,0,0.104788696275779,-0.326988596678969,-0.0304099808375785,0,0,0,0.0580205708173697,0,0,-0.373286155956567,0.238593266436861,-0.0950674631957995,-0.188159044769263,0,-0.302389727009913,-0.00403551511915612,-0.558977681017827,-0.142037172859163,-0.147401849371139,0.318243523371875,0,0.0574629426471636,0.157201571926686,0,0.117618962249318,-0.0489929911121171,0.393086931080948,-0.0416530163487343,0,0,0,-0.0291076513598929,0,0,0.146785185443374,0.141834092013455,0.123353288488261,0.00180834058671185,-0.0304859013709447,-0.0110409822514259,-0.0395325284566706,-0.457436452896595,0,-0.00517754034562301,0,0,0,-0.00368273176503642,-0.149012207187175,-0.107600930256957,0,0.152922438109167,-0.0683442610773682,0,0.0184242102060785,-0.0318466576171383,0,0,0.0581226690487352,0,0.324564326194432,0,0,0,-0.33026681614607,-0.0312669001084444,-0.232855561555545,0,0.062142784937249,0.00358627296441289,-0.135003917255371,0,-0.335719430476404,0.0866737419863695,-0.00417595591437975,-0.181249401549728,0,-0.0429062506073056,-0.372097542753682,0.0474148158859602,0.0858304375299845,-0.0584468268118252,-0.405907607581299,-0.0714807518301785,0.0270228865779452,0.635312858829435,-0.124307696593413,-0.0881268324752877,0,0.482455811629252,-0.171272888699802,-0.154709651609437,0.0386007851700575,0,0.422001608391072,0,-0.120934233758371,0,-0.555401804472439,-0.54043375147324,0.0689358683410358,0.0600066347604227,0,0.150648732826852,-0.788130937773974,0,0.210995140371536,0,0,0.174197242859792,0.186998564221219,-0.211650427864589,0.229028611259573,0,0.457169872512023,0,0,-0.262031572487363,-0.235476037764389,0,0.663459822368312,-0.100977671291674,0.280478489538507,0.620065062442602,0,0,-0.645700337992725,0,0,-0.0977028208963083,0.11039962408752,0.0171165759615137,0.383573558433391,0.072366853493703,0.617226912526954,0,0,-0.177527765965176,0,0.0838175473718195,0,0,-0.0875991335016077,-0.116628112990133,0,0,0,-0.064485092956884,0,0,0,0,0,0,0,0.0219112496656924,0.153391912705274,0,0,0,0,0,0,0,0,0,0.324564326194432,0.789786924449706,-0.0968332978427447,0.201546910518012,0,0,0,0,0.108840923640957,0.121327764099708,0,0.1927016196968,0,0,0,0,-0.0861409897892114,0,0,0,0,0.579169442866483,-0.268971170996089,0,0,0,0.0476099245926414,0,0,0,0,0.0092711640019365,0,0,0.0995139954035484,0,-0.209390985599258,-0.0815818795468414,0,-0.235588668207251,0.0359046121150222,-0.120753457458866,0,0.324564326194432,-0.261347131789888,0,0,-0.09247012059255,0,0.324564326194432,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.151296043074968,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.138643523552168,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,0.227571964951827,0,0,0,0,-0.564807121153884,0,0,0.539333083663207,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513580813884699,0.474881314700062,0,0,0,0,0,0,0,0.0497310279883413,0,0,0,0,-0.113884373708977,0,0,0,0.219767941405275,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636088921724955,0,0,0.0481270075205567,0,0,-0.070346189535826,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0.572562571420934,0.0702493532966898,0,0,0,0,0,0,0.19275527240058,0.734150956691052,0.0418942787958859,0,0,0,0.199727048978406,0,0,0,0.324564326194432,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81669521585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0.324564326194432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254112621460861,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.324564326194432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.730387971383654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102796375971327,0,0,0,0,0,0,0,0,0.324564326194432,0,0,0,0,-0.0482220752390542,0,0.240187693964405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266191173341008,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0709537179059267,0,0,0.407821243258255,0,0,0,0,0,0,0,0,0,0,0,0,0.263244147044305,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137136044866704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0132939918313698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.029696922372675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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=14.14794 | |rna_weight_ug=14.14794 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2350 | |sample_cell_catalog=RCB2350 | ||
|sample_cell_line=StromaNKtert | |sample_cell_line=StromaNKtert | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.01665849561905e-209!GO:0043226;organelle;5.34427488812454e-169!GO:0043229;intracellular organelle;1.57830682912045e-168!GO:0005737;cytoplasm;2.6889600630624e-168!GO:0043227;membrane-bound organelle;3.79947650994825e-163!GO:0043231;intracellular membrane-bound organelle;3.79947650994825e-163!GO:0044422;organelle part;7.89306569520384e-135!GO:0044446;intracellular organelle part;4.55252645317245e-133!GO:0044444;cytoplasmic part;1.51826636762883e-113!GO:0032991;macromolecular complex;2.69257960209605e-94!GO:0005515;protein binding;6.86518557917887e-81!GO:0044237;cellular metabolic process;4.61005658510694e-69!GO:0030529;ribonucleoprotein complex;2.35829894375032e-68!GO:0043170;macromolecule metabolic process;3.98505766158737e-68!GO:0044238;primary metabolic process;5.1442288754878e-68!GO:0005634;nucleus;1.07243196115678e-65!GO:0044428;nuclear part;9.56413220223424e-65!GO:0043233;organelle lumen;8.00745061011605e-63!GO:0031974;membrane-enclosed lumen;8.00745061011605e-63!GO:0003723;RNA binding;3.82590884141521e-56!GO:0016043;cellular component organization and biogenesis;2.51614337419667e-53!GO:0043234;protein complex;1.14147084664106e-51!GO:0005739;mitochondrion;4.10550737985882e-47!GO:0031090;organelle membrane;9.40104800813111e-46!GO:0019538;protein metabolic process;1.72431515279537e-44!GO:0033036;macromolecule localization;2.34031750454187e-41!GO:0015031;protein transport;6.53679097169362e-41!GO:0031981;nuclear lumen;7.03520858030049e-40!GO:0044260;cellular macromolecule metabolic process;1.02450301792688e-39!GO:0005840;ribosome;2.70630960964139e-39!GO:0044267;cellular protein metabolic process;6.49390289194172e-39!GO:0045184;establishment of protein localization;9.94706440551607e-38!GO:0043283;biopolymer metabolic process;1.37746365367435e-37!GO:0008104;protein localization;1.37746365367435e-37!GO:0043228;non-membrane-bound organelle;1.52671454556756e-36!GO:0043232;intracellular non-membrane-bound organelle;1.52671454556756e-36!GO:0006396;RNA processing;5.04946068426405e-36!GO:0006412;translation;5.99737638085012e-36!GO:0046907;intracellular transport;9.38931458056792e-36!GO:0016071;mRNA metabolic process;1.69829820515737e-35!GO:0003735;structural constituent of ribosome;2.02396789400279e-35!GO:0006996;organelle organization and biogenesis;1.83790900799465e-34!GO:0031967;organelle envelope;1.78458644976936e-32!GO:0044429;mitochondrial part;2.18961559596359e-32!GO:0031975;envelope;3.51685741534681e-32!GO:0005829;cytosol;1.73797168442724e-31!GO:0033279;ribosomal subunit;2.67714956541453e-31!GO:0006259;DNA metabolic process;1.15056472558956e-30!GO:0008380;RNA splicing;1.95965726687868e-30!GO:0006397;mRNA processing;2.95697462673066e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05994704455459e-29!GO:0010467;gene expression;4.7461706339292e-29!GO:0009059;macromolecule biosynthetic process;9.21971548683427e-29!GO:0006886;intracellular protein transport;2.82415722056426e-28!GO:0065003;macromolecular complex assembly;6.27143761414328e-28!GO:0009058;biosynthetic process;7.40120435277552e-27!GO:0005654;nucleoplasm;2.39660482342457e-26!GO:0022607;cellular component assembly;1.21046604260492e-24!GO:0051649;establishment of cellular localization;2.32869207490025e-24!GO:0051641;cellular localization;2.36970988363928e-24!GO:0007049;cell cycle;2.36970988363928e-24!GO:0044249;cellular biosynthetic process;4.26304150048418e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.81893322819338e-23!GO:0000166;nucleotide binding;1.67169089244501e-22!GO:0005740;mitochondrial envelope;6.65249757326177e-22!GO:0017111;nucleoside-triphosphatase activity;6.65249757326177e-22!GO:0044451;nucleoplasm part;7.87967220605026e-22!GO:0005681;spliceosome;1.31305687310995e-21!GO:0012505;endomembrane system;1.32990896547261e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.44319310648219e-21!GO:0016462;pyrophosphatase activity;2.1831070481204e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.52042451269853e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.46601623192656e-21!GO:0031966;mitochondrial membrane;8.57168069002973e-21!GO:0006119;oxidative phosphorylation;5.09966594086066e-20!GO:0019866;organelle inner membrane;6.24514455422873e-20!GO:0000278;mitotic cell cycle;2.46675334033483e-19!GO:0044445;cytosolic part;6.83687340385168e-19!GO:0008134;transcription factor binding;2.46875576526935e-18!GO:0005743;mitochondrial inner membrane;2.49201396169663e-18!GO:0005783;endoplasmic reticulum;3.99471379113755e-18!GO:0022402;cell cycle process;5.70438940303175e-18!GO:0006457;protein folding;8.74447122625009e-18!GO:0005794;Golgi apparatus;1.85650485918457e-17!GO:0015935;small ribosomal subunit;1.90644649613864e-16!GO:0022618;protein-RNA complex assembly;2.39882659736181e-16!GO:0044455;mitochondrial membrane part;2.96077006063161e-16!GO:0048770;pigment granule;3.3392071823129e-16!GO:0042470;melanosome;3.3392071823129e-16!GO:0044432;endoplasmic reticulum part;8.45517107086052e-16!GO:0015934;large ribosomal subunit;8.7856034879773e-16!GO:0032553;ribonucleotide binding;1.04273844362421e-15!GO:0032555;purine ribonucleotide binding;1.04273844362421e-15!GO:0017076;purine nucleotide binding;1.36788350183351e-15!GO:0003676;nucleic acid binding;2.3996005897705e-15!GO:0006974;response to DNA damage stimulus;2.84952646886215e-15!GO:0044265;cellular macromolecule catabolic process;4.17233820332636e-15!GO:0048193;Golgi vesicle transport;4.38089172911354e-15!GO:0016887;ATPase activity;5.3839839320529e-15!GO:0042623;ATPase activity, coupled;9.29133603139338e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;9.3020197159619e-15!GO:0006512;ubiquitin cycle;1.03646789240673e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.04481571726929e-14!GO:0005524;ATP binding;1.11972495008839e-14!GO:0051276;chromosome organization and biogenesis;1.13654808285024e-14!GO:0043285;biopolymer catabolic process;1.17308631388769e-14!GO:0051301;cell division;1.22236931928795e-14!GO:0005730;nucleolus;1.80447001284977e-14!GO:0019941;modification-dependent protein catabolic process;1.8916167578172e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.8916167578172e-14!GO:0044257;cellular protein catabolic process;2.22395940350208e-14!GO:0000087;M phase of mitotic cell cycle;2.31261829416461e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.91887776109572e-14!GO:0032559;adenyl ribonucleotide binding;3.15252235969955e-14!GO:0016192;vesicle-mediated transport;3.21619320882378e-14!GO:0007067;mitosis;3.2615449330263e-14!GO:0016874;ligase activity;3.26819530744401e-14!GO:0005694;chromosome;4.63694699525719e-14!GO:0005746;mitochondrial respiratory chain;5.68545570683897e-14!GO:0030554;adenyl nucleotide binding;5.86870112911597e-14!GO:0006605;protein targeting;7.94662476223071e-14!GO:0022403;cell cycle phase;9.04867934008979e-14!GO:0051082;unfolded protein binding;9.227101448952e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.28186762361876e-13!GO:0044427;chromosomal part;2.33632445003796e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.55398307631505e-13!GO:0003954;NADH dehydrogenase activity;2.55398307631505e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.55398307631505e-13!GO:0043412;biopolymer modification;3.1691251388299e-13!GO:0003712;transcription cofactor activity;3.23655863206031e-13!GO:0009057;macromolecule catabolic process;3.67495715107714e-13!GO:0031980;mitochondrial lumen;4.54555167237986e-13!GO:0005759;mitochondrial matrix;4.54555167237986e-13!GO:0006281;DNA repair;1.55675773982876e-12!GO:0008135;translation factor activity, nucleic acid binding;1.77212173872636e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.01113943861101e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;3.07973714741622e-12!GO:0030163;protein catabolic process;3.2520069745524e-12!GO:0044248;cellular catabolic process;3.49775102216461e-12!GO:0016070;RNA metabolic process;6.83449357767108e-12!GO:0006464;protein modification process;7.7355427695949e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.00106356900087e-11!GO:0000375;RNA splicing, via transesterification reactions;1.00106356900087e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.00106356900087e-11!GO:0012501;programmed cell death;1.0130987297329e-11!GO:0006323;DNA packaging;1.1789655819657e-11!GO:0005793;ER-Golgi intermediate compartment;1.24794696491477e-11!GO:0051186;cofactor metabolic process;1.28987903423694e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.56367597826999e-11!GO:0045271;respiratory chain complex I;1.56367597826999e-11!GO:0005747;mitochondrial respiratory chain complex I;1.56367597826999e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.65682725525486e-11!GO:0042773;ATP synthesis coupled electron transport;1.65682725525486e-11!GO:0006913;nucleocytoplasmic transport;1.79254691667266e-11!GO:0016604;nuclear body;2.22419380212988e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.30130323213708e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.40455130524316e-11!GO:0006915;apoptosis;2.45470083136887e-11!GO:0005635;nuclear envelope;2.45966831052734e-11!GO:0051169;nuclear transport;2.9532499645523e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.9943852185559e-11!GO:0006260;DNA replication;3.05640828190635e-11!GO:0005761;mitochondrial ribosome;3.07747801334154e-11!GO:0000313;organellar ribosome;3.07747801334154e-11!GO:0008639;small protein conjugating enzyme activity;3.13874514590014e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.8019197472939e-11!GO:0006366;transcription from RNA polymerase II promoter;5.77813448484313e-11!GO:0004842;ubiquitin-protein ligase activity;6.9198958447836e-11!GO:0008219;cell death;7.78940165060143e-11!GO:0016265;death;7.78940165060143e-11!GO:0004386;helicase activity;8.29861776043506e-11!GO:0005789;endoplasmic reticulum membrane;8.54425643555378e-11!GO:0003743;translation initiation factor activity;8.69158406648466e-11!GO:0000279;M phase;9.70044911665135e-11!GO:0019787;small conjugating protein ligase activity;2.40748240472083e-10!GO:0043687;post-translational protein modification;2.44273262799428e-10!GO:0048523;negative regulation of cellular process;2.96355890849744e-10!GO:0009719;response to endogenous stimulus;3.05347074510436e-10!GO:0006413;translational initiation;5.35244428804197e-10!GO:0051726;regulation of cell cycle;5.81076778220404e-10!GO:0015630;microtubule cytoskeleton;6.95531428938757e-10!GO:0000074;regulation of progression through cell cycle;8.19574615262203e-10!GO:0031965;nuclear membrane;8.46862872650175e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.31479940698681e-09!GO:0044453;nuclear membrane part;1.52029693582797e-09!GO:0008026;ATP-dependent helicase activity;2.88512062984806e-09!GO:0016607;nuclear speck;4.02833365403004e-09!GO:0016881;acid-amino acid ligase activity;4.04420046692565e-09!GO:0006446;regulation of translational initiation;4.15023767206176e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.93850992447537e-09!GO:0000785;chromatin;5.95009945567385e-09!GO:0006732;coenzyme metabolic process;7.27019340017695e-09!GO:0006333;chromatin assembly or disassembly;7.68214013596571e-09!GO:0003714;transcription corepressor activity;7.83961757943156e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.26542063533084e-09!GO:0048519;negative regulation of biological process;9.51888333182168e-09!GO:0009055;electron carrier activity;9.643093422467e-09!GO:0044431;Golgi apparatus part;1.43483687559334e-08!GO:0005768;endosome;1.47586512087192e-08!GO:0017038;protein import;1.53913693635741e-08!GO:0019829;cation-transporting ATPase activity;3.28775361680882e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.32594630553109e-08!GO:0009259;ribonucleotide metabolic process;3.53301638748899e-08!GO:0015986;ATP synthesis coupled proton transport;5.28956172368348e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.28956172368348e-08!GO:0050794;regulation of cellular process;5.76476757708653e-08!GO:0005813;centrosome;6.18997130166191e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.41316835691961e-08!GO:0016564;transcription repressor activity;7.16404623763354e-08!GO:0005819;spindle;8.1779289373869e-08!GO:0006461;protein complex assembly;8.90413839049996e-08!GO:0005815;microtubule organizing center;9.60105228193652e-08!GO:0016568;chromatin modification;1.08523342672381e-07!GO:0009260;ribonucleotide biosynthetic process;1.14239233125e-07!GO:0008565;protein transporter activity;1.27054174463853e-07!GO:0006403;RNA localization;1.27387180508298e-07!GO:0043566;structure-specific DNA binding;1.35380768422465e-07!GO:0050657;nucleic acid transport;1.37351336865177e-07!GO:0051236;establishment of RNA localization;1.37351336865177e-07!GO:0050658;RNA transport;1.37351336865177e-07!GO:0005788;endoplasmic reticulum lumen;1.57915747338424e-07!GO:0065004;protein-DNA complex assembly;1.69728906127448e-07!GO:0009150;purine ribonucleotide metabolic process;1.69830479874602e-07!GO:0007010;cytoskeleton organization and biogenesis;1.72761309497293e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.73800044136105e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.73800044136105e-07!GO:0006163;purine nucleotide metabolic process;1.89169403835836e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.99916618061146e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.04776748081092e-07!GO:0005643;nuclear pore;2.10723704659679e-07!GO:0030120;vesicle coat;2.13842108130083e-07!GO:0030662;coated vesicle membrane;2.13842108130083e-07!GO:0009141;nucleoside triphosphate metabolic process;2.26707345324665e-07!GO:0006164;purine nucleotide biosynthetic process;2.48250731692761e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.76965779855563e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.76965779855563e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.14094738055902e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.14094738055902e-07!GO:0006754;ATP biosynthetic process;3.16119159852842e-07!GO:0006753;nucleoside phosphate metabolic process;3.16119159852842e-07!GO:0032446;protein modification by small protein conjugation;3.2537676380031e-07!GO:0005667;transcription factor complex;3.52328955634553e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.33168343657024e-07!GO:0065002;intracellular protein transport across a membrane;4.38293738630464e-07!GO:0046034;ATP metabolic process;5.42991771326674e-07!GO:0000151;ubiquitin ligase complex;5.81532207222174e-07!GO:0016567;protein ubiquitination;7.40154997559085e-07!GO:0006793;phosphorus metabolic process;7.88317707339019e-07!GO:0006796;phosphate metabolic process;7.88317707339019e-07!GO:0042254;ribosome biogenesis and assembly;8.74092732443525e-07!GO:0009060;aerobic respiration;8.90015662198499e-07!GO:0031324;negative regulation of cellular metabolic process;8.97271666096075e-07!GO:0048475;coated membrane;9.44698903345843e-07!GO:0030117;membrane coat;9.44698903345843e-07!GO:0000245;spliceosome assembly;9.8867200127409e-07!GO:0031252;leading edge;1.05270792864262e-06!GO:0042981;regulation of apoptosis;1.12893796436768e-06!GO:0043067;regulation of programmed cell death;1.15755640434219e-06!GO:0043069;negative regulation of programmed cell death;1.17105504218682e-06!GO:0016787;hydrolase activity;1.17488428408416e-06!GO:0016563;transcription activator activity;1.18400538302146e-06!GO:0046930;pore complex;1.44054378693392e-06!GO:0009056;catabolic process;1.45181698231799e-06!GO:0051170;nuclear import;1.56529606007586e-06!GO:0006606;protein import into nucleus;1.6011522289898e-06!GO:0043066;negative regulation of apoptosis;1.98829851915098e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.0322291805089e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.06156192068418e-06!GO:0051325;interphase;2.12660454311714e-06!GO:0000139;Golgi membrane;2.12820116947279e-06!GO:0030036;actin cytoskeleton organization and biogenesis;2.17424223800332e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.20389571510909e-06!GO:0044440;endosomal part;2.36928059932046e-06!GO:0010008;endosome membrane;2.36928059932046e-06!GO:0051246;regulation of protein metabolic process;2.7577428428005e-06!GO:0051329;interphase of mitotic cell cycle;2.76434343510939e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.80131976465026e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.8715522513786e-06!GO:0009892;negative regulation of metabolic process;3.11978021745304e-06!GO:0045259;proton-transporting ATP synthase complex;3.20707326799357e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.45064517970586e-06!GO:0003697;single-stranded DNA binding;3.8762862354497e-06!GO:0051028;mRNA transport;3.93730512788382e-06!GO:0016310;phosphorylation;4.92642465683012e-06!GO:0045333;cellular respiration;6.05338753181174e-06!GO:0005773;vacuole;6.75232643888723e-06!GO:0006334;nucleosome assembly;7.0203085039015e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.48724142067949e-06!GO:0051188;cofactor biosynthetic process;7.71797075058559e-06!GO:0005798;Golgi-associated vesicle;7.71797075058559e-06!GO:0003713;transcription coactivator activity;9.11783517953528e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.55484439325921e-06!GO:0015399;primary active transmembrane transporter activity;9.55484439325921e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.91712857876814e-06!GO:0008092;cytoskeletal protein binding;9.96456296477119e-06!GO:0006916;anti-apoptosis;1.00718729877715e-05!GO:0031497;chromatin assembly;1.00718729877715e-05!GO:0048522;positive regulation of cellular process;1.08730058539343e-05!GO:0003924;GTPase activity;1.18656974072212e-05!GO:0000775;chromosome, pericentric region;1.29760230336715e-05!GO:0007051;spindle organization and biogenesis;1.33031014235047e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.4210282464973e-05!GO:0050789;regulation of biological process;1.52609474912171e-05!GO:0031988;membrane-bound vesicle;1.67530458820449e-05!GO:0003724;RNA helicase activity;1.75243390623892e-05!GO:0051187;cofactor catabolic process;1.85198872918405e-05!GO:0030029;actin filament-based process;1.95460896766697e-05!GO:0005770;late endosome;1.99689343039838e-05!GO:0016491;oxidoreductase activity;2.09406898723559e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.29115129144297e-05!GO:0006613;cotranslational protein targeting to membrane;2.32626482794963e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.43880515693549e-05!GO:0006099;tricarboxylic acid cycle;2.50055756376563e-05!GO:0046356;acetyl-CoA catabolic process;2.50055756376563e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.57308078010453e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.6030772279338e-05!GO:0045786;negative regulation of progression through cell cycle;2.6761045785484e-05!GO:0006399;tRNA metabolic process;2.74772882664396e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.79415047780297e-05!GO:0016481;negative regulation of transcription;3.10826801092351e-05!GO:0000323;lytic vacuole;3.23601552356719e-05!GO:0005764;lysosome;3.23601552356719e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.46415676991736e-05!GO:0003682;chromatin binding;3.69760565254991e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.87567859927462e-05!GO:0004812;aminoacyl-tRNA ligase activity;3.87567859927462e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.87567859927462e-05!GO:0043038;amino acid activation;4.12891411274569e-05!GO:0006418;tRNA aminoacylation for protein translation;4.12891411274569e-05!GO:0043039;tRNA aminoacylation;4.12891411274569e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;4.2338878791613e-05!GO:0019899;enzyme binding;4.28448912192823e-05!GO:0016740;transferase activity;4.75740645604248e-05!GO:0008361;regulation of cell size;4.81328846214437e-05!GO:0006091;generation of precursor metabolites and energy;4.99490828250314e-05!GO:0009109;coenzyme catabolic process;5.83038891063799e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;6.73923384480869e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.1543560968576e-05!GO:0016049;cell growth;7.62149015428314e-05!GO:0004298;threonine endopeptidase activity;7.70214282673729e-05!GO:0006084;acetyl-CoA metabolic process;8.01317079748603e-05!GO:0000075;cell cycle checkpoint;8.35322561395997e-05!GO:0045454;cell redox homeostasis;8.38998926185079e-05!GO:0007243;protein kinase cascade;8.61587254579968e-05!GO:0031982;vesicle;9.98121412788375e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000100967503982241!GO:0007005;mitochondrion organization and biogenesis;0.00010231850382759!GO:0005769;early endosome;0.000115550684482009!GO:0006752;group transfer coenzyme metabolic process;0.0001224763910052!GO:0008654;phospholipid biosynthetic process;0.000123742873492936!GO:0016779;nucleotidyltransferase activity;0.000123952484927066!GO:0051789;response to protein stimulus;0.000125260788636578!GO:0006986;response to unfolded protein;0.000125260788636578!GO:0043623;cellular protein complex assembly;0.000126586063011917!GO:0051427;hormone receptor binding;0.000128419352621138!GO:0005048;signal sequence binding;0.000145075673685204!GO:0030867;rough endoplasmic reticulum membrane;0.000148568682600166!GO:0005762;mitochondrial large ribosomal subunit;0.000154193556541907!GO:0000315;organellar large ribosomal subunit;0.000154193556541907!GO:0016859;cis-trans isomerase activity;0.00015621743906734!GO:0009108;coenzyme biosynthetic process;0.000157501556427344!GO:0031410;cytoplasmic vesicle;0.000188502369076141!GO:0051168;nuclear export;0.000202615822641005!GO:0006261;DNA-dependent DNA replication;0.000204246127626598!GO:0003690;double-stranded DNA binding;0.000239732427999248!GO:0035257;nuclear hormone receptor binding;0.000246779808230117!GO:0006364;rRNA processing;0.000258776501659965!GO:0009117;nucleotide metabolic process;0.000263983507280947!GO:0065009;regulation of a molecular function;0.00028144171763435!GO:0008250;oligosaccharyl transferase complex;0.000320491220813947!GO:0015980;energy derivation by oxidation of organic compounds;0.000348610395992941!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000380950679411744!GO:0000776;kinetochore;0.000394605017688486!GO:0043021;ribonucleoprotein binding;0.00040131061288232!GO:0001558;regulation of cell growth;0.000410280187953893!GO:0019843;rRNA binding;0.00041484550905801!GO:0005885;Arp2/3 protein complex;0.000434512807504812!GO:0033116;ER-Golgi intermediate compartment membrane;0.000440855026734648!GO:0042802;identical protein binding;0.000468173284267741!GO:0016072;rRNA metabolic process;0.000488181884705786!GO:0031968;organelle outer membrane;0.000488922534182805!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000495711305493601!GO:0003729;mRNA binding;0.000511297205199217!GO:0019867;outer membrane;0.000537656945287487!GO:0008047;enzyme activator activity;0.000539070040062976!GO:0004576;oligosaccharyl transferase activity;0.000558301774211838!GO:0031072;heat shock protein binding;0.000585939628561569!GO:0008186;RNA-dependent ATPase activity;0.000586431859549535!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000635404821224416!GO:0045941;positive regulation of transcription;0.00071272813578611!GO:0022890;inorganic cation transmembrane transporter activity;0.000753492839287282!GO:0006402;mRNA catabolic process;0.000797093445656934!GO:0016044;membrane organization and biogenesis;0.000820558978311816!GO:0045045;secretory pathway;0.000857042030056393!GO:0048471;perinuclear region of cytoplasm;0.000879506978806864!GO:0051252;regulation of RNA metabolic process;0.000935923233158792!GO:0000314;organellar small ribosomal subunit;0.00105039055475939!GO:0005763;mitochondrial small ribosomal subunit;0.00105039055475939!GO:0005874;microtubule;0.00110364650121588!GO:0030663;COPI coated vesicle membrane;0.00112281804552921!GO:0030126;COPI vesicle coat;0.00112281804552921!GO:0045892;negative regulation of transcription, DNA-dependent;0.00112281804552921!GO:0030027;lamellipodium;0.00113235694973139!GO:0005096;GTPase activator activity;0.00121433006208055!GO:0048518;positive regulation of biological process;0.00121433006208055!GO:0005905;coated pit;0.00121433006208055!GO:0016853;isomerase activity;0.00124389066686754!GO:0003779;actin binding;0.0013185866760063!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00132549898391227!GO:0008022;protein C-terminus binding;0.00135222468067226!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00138462992222302!GO:0005741;mitochondrial outer membrane;0.00150499693852083!GO:0004004;ATP-dependent RNA helicase activity;0.00155274580780518!GO:0030137;COPI-coated vesicle;0.00161591368091098!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00163959456879458!GO:0051920;peroxiredoxin activity;0.00166305219010729!GO:0065007;biological regulation;0.00168274581566136!GO:0001726;ruffle;0.00170628025380523!GO:0019222;regulation of metabolic process;0.00174845464328284!GO:0007052;mitotic spindle organization and biogenesis;0.0018166683486803!GO:0016363;nuclear matrix;0.00182588776574786!GO:0008139;nuclear localization sequence binding;0.00191700001127871!GO:0007059;chromosome segregation;0.00205155766817882!GO:0046474;glycerophospholipid biosynthetic process;0.00206339323724038!GO:0006383;transcription from RNA polymerase III promoter;0.00208180416213049!GO:0005525;GTP binding;0.00211360032928437!GO:0018196;peptidyl-asparagine modification;0.00214068897267273!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00214068897267273!GO:0005876;spindle microtubule;0.00216017920542132!GO:0030133;transport vesicle;0.00218491764168126!GO:0045893;positive regulation of transcription, DNA-dependent;0.00227316382861445!GO:0006891;intra-Golgi vesicle-mediated transport;0.00231796858522718!GO:0046489;phosphoinositide biosynthetic process;0.00236047373062518!GO:0005856;cytoskeleton;0.0024074657118316!GO:0005657;replication fork;0.00249707803304191!GO:0007265;Ras protein signal transduction;0.00251542158418331!GO:0006612;protein targeting to membrane;0.00274717044518319!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00278970077765573!GO:0015992;proton transport;0.0028556789183854!GO:0030132;clathrin coat of coated pit;0.00286682206449352!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00288765967232193!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00292534820243187!GO:0044262;cellular carbohydrate metabolic process;0.00305921326373156!GO:0030521;androgen receptor signaling pathway;0.00310210018130004!GO:0030127;COPII vesicle coat;0.00310210018130004!GO:0012507;ER to Golgi transport vesicle membrane;0.00310210018130004!GO:0030134;ER to Golgi transport vesicle;0.00311962476107955!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00325949597178523!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00325949597178523!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00325949597178523!GO:0030041;actin filament polymerization;0.00328814808806219!GO:0006818;hydrogen transport;0.00328814808806219!GO:0007030;Golgi organization and biogenesis;0.00330068525204405!GO:0006302;double-strand break repair;0.00335790343700265!GO:0003899;DNA-directed RNA polymerase activity;0.00351768417685859!GO:0008094;DNA-dependent ATPase activity;0.00351768417685859!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00358423186833573!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00358423186833573!GO:0040008;regulation of growth;0.00361575250899932!GO:0050790;regulation of catalytic activity;0.00371784085790092!GO:0004674;protein serine/threonine kinase activity;0.00375851278868624!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00383879764833746!GO:0017166;vinculin binding;0.00385141439169712!GO:0006950;response to stress;0.00400104457655031!GO:0048500;signal recognition particle;0.00414863977662067!GO:0006497;protein amino acid lipidation;0.00431555223326613!GO:0007017;microtubule-based process;0.00431950019433433!GO:0030658;transport vesicle membrane;0.00457598304372197!GO:0000082;G1/S transition of mitotic cell cycle;0.00462744824706364!GO:0051128;regulation of cellular component organization and biogenesis;0.00464605734902955!GO:0007264;small GTPase mediated signal transduction;0.00490575039373273!GO:0008154;actin polymerization and/or depolymerization;0.00514613092595158!GO:0007088;regulation of mitosis;0.00516155385250567!GO:0007346;regulation of progression through mitotic cell cycle;0.00516900773823139!GO:0003678;DNA helicase activity;0.0053757155509088!GO:0007050;cell cycle arrest;0.00558530261365004!GO:0006352;transcription initiation;0.00571147254485444!GO:0000786;nucleosome;0.00622743647916653!GO:0048468;cell development;0.00636499562963007!GO:0006338;chromatin remodeling;0.00639089414438071!GO:0009165;nucleotide biosynthetic process;0.00639089414438071!GO:0005100;Rho GTPase activator activity;0.00681429475441874!GO:0006401;RNA catabolic process;0.00698740461671325!GO:0006892;post-Golgi vesicle-mediated transport;0.00704016211964824!GO:0000059;protein import into nucleus, docking;0.00721225797920496!GO:0032561;guanyl ribonucleotide binding;0.00723802157803403!GO:0019001;guanyl nucleotide binding;0.00723802157803403!GO:0009967;positive regulation of signal transduction;0.00751108934550724!GO:0043488;regulation of mRNA stability;0.00751108934550724!GO:0043487;regulation of RNA stability;0.00751108934550724!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00760283653529922!GO:0005791;rough endoplasmic reticulum;0.00760283653529922!GO:0000922;spindle pole;0.007610067224842!GO:0007093;mitotic cell cycle checkpoint;0.00789473868854921!GO:0006289;nucleotide-excision repair;0.00796258127172484!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00809166813495295!GO:0015002;heme-copper terminal oxidase activity;0.00809166813495295!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00809166813495295!GO:0004129;cytochrome-c oxidase activity;0.00809166813495295!GO:0005862;muscle thin filament tropomyosin;0.00817001054603211!GO:0015631;tubulin binding;0.00818518477284088!GO:0005801;cis-Golgi network;0.00832885897807602!GO:0035258;steroid hormone receptor binding;0.00859215818599957!GO:0051052;regulation of DNA metabolic process;0.00863650637798054!GO:0042158;lipoprotein biosynthetic process;0.00869120345809101!GO:0006509;membrane protein ectodomain proteolysis;0.00875089821619393!GO:0033619;membrane protein proteolysis;0.00875089821619393!GO:0016197;endosome transport;0.00891301687937859!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00919099584113695!GO:0045047;protein targeting to ER;0.00919099584113695!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00948516433254119!GO:0003684;damaged DNA binding;0.00985428014726898!GO:0006405;RNA export from nucleus;0.0100445669177762!GO:0008312;7S RNA binding;0.0102803956168264!GO:0030660;Golgi-associated vesicle membrane;0.0103182593591628!GO:0032508;DNA duplex unwinding;0.0104506846937645!GO:0032392;DNA geometric change;0.0104506846937645!GO:0030176;integral to endoplasmic reticulum membrane;0.0105008353128634!GO:0006268;DNA unwinding during replication;0.0106868263916714!GO:0030118;clathrin coat;0.0108973017152733!GO:0005869;dynactin complex;0.0110520842067108!GO:0006979;response to oxidative stress;0.0110520842067108!GO:0043681;protein import into mitochondrion;0.0111711076624373!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0118100183797853!GO:0046467;membrane lipid biosynthetic process;0.0120075599997158!GO:0006897;endocytosis;0.0121246741142677!GO:0010324;membrane invagination;0.0121246741142677!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0126097931297539!GO:0048487;beta-tubulin binding;0.0128525348367374!GO:0032940;secretion by cell;0.0129518652779924!GO:0030518;steroid hormone receptor signaling pathway;0.0134944846141976!GO:0050681;androgen receptor binding;0.0136700048103676!GO:0007006;mitochondrial membrane organization and biogenesis;0.0147303016589932!GO:0047485;protein N-terminus binding;0.0148835126245141!GO:0030659;cytoplasmic vesicle membrane;0.0150010230166258!GO:0000910;cytokinesis;0.0151058217609224!GO:0033673;negative regulation of kinase activity;0.0152835961085736!GO:0006469;negative regulation of protein kinase activity;0.0152835961085736!GO:0031124;mRNA 3'-end processing;0.0155413939795484!GO:0016584;nucleosome positioning;0.0163511530163588!GO:0006607;NLS-bearing substrate import into nucleus;0.0173614887605892!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0176303468389088!GO:0003711;transcription elongation regulator activity;0.0176303468389088!GO:0008286;insulin receptor signaling pathway;0.01773160636583!GO:0051348;negative regulation of transferase activity;0.017749144158359!GO:0046519;sphingoid metabolic process;0.0178307682371439!GO:0019798;procollagen-proline dioxygenase activity;0.0183326119386052!GO:0005637;nuclear inner membrane;0.0185708614264015!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.018784152819736!GO:0031529;ruffle organization and biogenesis;0.0191604662033113!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0192750651379533!GO:0016301;kinase activity;0.0192750651379533!GO:0031902;late endosome membrane;0.019347741756563!GO:0005875;microtubule associated complex;0.019347741756563!GO:0006611;protein export from nucleus;0.019583446430188!GO:0030833;regulation of actin filament polymerization;0.0198837309347859!GO:0000792;heterochromatin;0.0199628709472043!GO:0016272;prefoldin complex;0.0199628709472043!GO:0006376;mRNA splice site selection;0.0202218883277852!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0202218883277852!GO:0005083;small GTPase regulator activity;0.020699828922959!GO:0051287;NAD binding;0.020699828922959!GO:0008632;apoptotic program;0.020773361161236!GO:0009893;positive regulation of metabolic process;0.0209986640981906!GO:0031901;early endosome membrane;0.0209986640981906!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0210302270063228!GO:0046983;protein dimerization activity;0.0218049072464949!GO:0016408;C-acyltransferase activity;0.0223369702097939!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0225173919482997!GO:0033043;regulation of organelle organization and biogenesis;0.0225173919482997!GO:0006506;GPI anchor biosynthetic process;0.0225173919482997!GO:0007041;lysosomal transport;0.0225701991942478!GO:0043130;ubiquitin binding;0.0225701991942478!GO:0032182;small conjugating protein binding;0.0225701991942478!GO:0050662;coenzyme binding;0.0227006777734615!GO:0005684;U2-dependent spliceosome;0.0228213464966453!GO:0007034;vacuolar transport;0.0232439566782809!GO:0031543;peptidyl-proline dioxygenase activity;0.0237929930194882!GO:0006595;polyamine metabolic process;0.0242901536515785!GO:0022415;viral reproductive process;0.0243185255654981!GO:0035035;histone acetyltransferase binding;0.0245986791399656!GO:0000287;magnesium ion binding;0.0245986791399656!GO:0006672;ceramide metabolic process;0.0246448151868562!GO:0006284;base-excision repair;0.0247863035671648!GO:0044433;cytoplasmic vesicle part;0.0248542590058293!GO:0019206;nucleoside kinase activity;0.0251409189994143!GO:0006650;glycerophospholipid metabolic process;0.0252423608281216!GO:0007266;Rho protein signal transduction;0.0253926463372278!GO:0046483;heterocycle metabolic process;0.0256195857582337!GO:0043022;ribosome binding;0.0256891250801937!GO:0012506;vesicle membrane;0.0257731681977975!GO:0006505;GPI anchor metabolic process;0.0257815566356184!GO:0007040;lysosome organization and biogenesis;0.0259538057767929!GO:0030384;phosphoinositide metabolic process;0.0261115922560282!GO:0043624;cellular protein complex disassembly;0.0261426409864889!GO:0006118;electron transport;0.0261929096757788!GO:0043284;biopolymer biosynthetic process;0.0263811042202415!GO:0006778;porphyrin metabolic process;0.0274962027311122!GO:0033013;tetrapyrrole metabolic process;0.0274962027311122!GO:0043414;biopolymer methylation;0.0283843265658587!GO:0006310;DNA recombination;0.0284477681651007!GO:0005099;Ras GTPase activator activity;0.0285815250300414!GO:0030695;GTPase regulator activity;0.0297954048114614!GO:0008180;signalosome;0.0300738696479321!GO:0000118;histone deacetylase complex;0.0301331984214271!GO:0000209;protein polyubiquitination;0.0308189474058387!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.031432100338834!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0321048022186542!GO:0042393;histone binding;0.0325961384325572!GO:0032906;transforming growth factor-beta2 production;0.0328946387509022!GO:0032909;regulation of transforming growth factor-beta2 production;0.0328946387509022!GO:0033367;protein localization in mast cell secretory granule;0.0338576576211307!GO:0033365;protein localization in organelle;0.0338576576211307!GO:0033371;T cell secretory granule organization and biogenesis;0.0338576576211307!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0338576576211307!GO:0033375;protease localization in T cell secretory granule;0.0338576576211307!GO:0042629;mast cell granule;0.0338576576211307!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0338576576211307!GO:0033364;mast cell secretory granule organization and biogenesis;0.0338576576211307!GO:0033380;granzyme B localization in T cell secretory granule;0.0338576576211307!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0338576576211307!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0338576576211307!GO:0033368;protease localization in mast cell secretory granule;0.0338576576211307!GO:0033366;protein localization in secretory granule;0.0338576576211307!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0338576576211307!GO:0033374;protein localization in T cell secretory granule;0.0338576576211307!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0338597632101666!GO:0032259;methylation;0.0340904104172607!GO:0030119;AP-type membrane coat adaptor complex;0.0343115493205387!GO:0031625;ubiquitin protein ligase binding;0.0349420828038926!GO:0042770;DNA damage response, signal transduction;0.035376666335897!GO:0032984;macromolecular complex disassembly;0.0356317679988596!GO:0045792;negative regulation of cell size;0.0357861370107357!GO:0006414;translational elongation;0.0369813094209447!GO:0015036;disulfide oxidoreductase activity;0.0370025957427054!GO:0005881;cytoplasmic microtubule;0.0372204835960855!GO:0008629;induction of apoptosis by intracellular signals;0.0372410477406887!GO:0042168;heme metabolic process;0.0374081732630233!GO:0003756;protein disulfide isomerase activity;0.0374081732630233!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0374081732630233!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0374081732630233!GO:0006626;protein targeting to mitochondrion;0.0376719862168048!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0381229880701852!GO:0008144;drug binding;0.038140562844958!GO:0030032;lamellipodium biogenesis;0.038420750448471!GO:0051540;metal cluster binding;0.0386186869016822!GO:0051536;iron-sulfur cluster binding;0.0386186869016822!GO:0018193;peptidyl-amino acid modification;0.0390210339614569!GO:0031589;cell-substrate adhesion;0.0390393399673776!GO:0005832;chaperonin-containing T-complex;0.0392994510546604!GO:0030911;TPR domain binding;0.0393222019514214!GO:0030308;negative regulation of cell growth;0.0393222019514214!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0393383748227796!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0396244647997828!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0396244647997828!GO:0032200;telomere organization and biogenesis;0.0396244647997828!GO:0000723;telomere maintenance;0.0396244647997828!GO:0007160;cell-matrix adhesion;0.0408181026871109!GO:0051098;regulation of binding;0.0408275948652266!GO:0000084;S phase of mitotic cell cycle;0.0410148169908944!GO:0005774;vacuolar membrane;0.0410694919928974!GO:0004003;ATP-dependent DNA helicase activity;0.041136147849045!GO:0030522;intracellular receptor-mediated signaling pathway;0.041402038370731!GO:0043087;regulation of GTPase activity;0.0416353473862638!GO:0007242;intracellular signaling cascade;0.0417020164128282!GO:0008243;plasminogen activator activity;0.0423393695199051!GO:0006839;mitochondrial transport;0.0426988548345524!GO:0005784;translocon complex;0.042718585187029!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0429110491512045!GO:0051087;chaperone binding;0.0445218025355086!GO:0000819;sister chromatid segregation;0.0446391788270786!GO:0051338;regulation of transferase activity;0.0449274444914994!GO:0008234;cysteine-type peptidase activity;0.0464902301847631!GO:0030125;clathrin vesicle coat;0.0464902301847631!GO:0030665;clathrin coated vesicle membrane;0.0464902301847631!GO:0051101;regulation of DNA binding;0.0465392103084224!GO:0008283;cell proliferation;0.0467304224781789!GO:0000070;mitotic sister chromatid segregation;0.0481684317494589!GO:0019902;phosphatase binding;0.0482537994848688!GO:0005591;collagen type VIII;0.0489968673860077!GO:0005598;short-chain collagen;0.0489968673860077!GO:0008168;methyltransferase activity;0.0491544639832993!GO:0007033;vacuole organization and biogenesis;0.0493832104778588 | |||
|sample_id=10686 | |sample_id=10686 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=FOXL1:2.10090991755;HBP1_HMGB_SSRP1_UBTF:2.09665051933;FOXA2:1.66294293351;NR3C1:1.64716851785;HMGA1,2:1.36664237429;PDX1:1.32405049653;HOX{A5,B5}:1.12507124598;HAND1,2:1.05909696465;STAT5{A,B}:1.05452077652;TEAD1:1.05279866064;EN1,2:1.04719020866;FOXO1,3,4:1.03241831323;VSX1,2:1.02419582089;GFI1:0.982635219377;NFATC1..3:0.96182487473;TAL1_TCF{3,4,12}:0.956903884692;GFI1B:0.956015419373;SRF:0.924648728237;NR1H4:0.908229834419;MAFB:0.897308517917;ZNF238:0.842699921692;MEF2{A,B,C,D}:0.830062753309;SOX17:0.807935265833;POU3F1..4:0.782292783206;NR6A1:0.755392674208;LHX3,4:0.724726913678;LEF1_TCF7_TCF7L1,2:0.720093831782;POU5F1:0.708312187422;TLX1..3_NFIC{dimer}:0.695998057459;PAX4:0.691128825568;NKX2-2,8:0.635624322303;TFDP1:0.627038983858;EVI1:0.620511340865;ADNP_IRX_SIX_ZHX:0.586918646786;POU1F1:0.586242083927;GTF2A1,2:0.565765454833;FOX{I1,J2}:0.563778545348;GZF1:0.535511071198;TFAP2{A,C}:0.531853841053;TP53:0.530287366202;AIRE:0.496171138618;ZBTB6:0.48712441834;PITX1..3:0.473415976736;MTE{core}:0.422500464804;NANOG:0.41774327682;NKX2-3_NKX2-5:0.417100584622;GTF2I:0.39914496983;FOXM1:0.392970946345;AR:0.392455041751;PPARG:0.387185066624;HOX{A4,D4}:0.38419172619;MYB:0.373144792777;E2F1..5:0.355315821186;NHLH1,2:0.354856427497;NKX2-1,4:0.354241897537;ATF6:0.351387866536;AHR_ARNT_ARNT2:0.334490125768;TFAP4:0.320127357039;MZF1:0.311018285537;DBP:0.310263633278;TEF:0.305948460904;BACH2:0.298733859952;NFE2L1:0.297600257805;TGIF1:0.281286417243;FOSL2:0.253349066552;NFE2L2:0.25007102939;MYBL2:0.206130908407;HIC1:0.205451183575;IKZF1:0.205182170682;TFCP2:0.196373212059;MAZ:0.194887443844;FOS_FOS{B,L1}_JUN{B,D}:0.175841562864;EBF1:0.171174961253;HES1:0.166322233475;XBP1:0.16281501646;PRRX1,2:0.160365361505;PAX3,7:0.159118474509;NFE2:0.14958147814;DMAP1_NCOR{1,2}_SMARC:0.135764396044;ZFP161:0.128675432301;GLI1..3:0.114365008325;FOX{D1,D2}:0.103306947035;POU2F1..3:0.102795574131;GATA4:0.0983539364679;TBX4,5:0.0981467183797;HNF1A:0.0849212159815;PAX5:0.0625861251424;IRF1,2:0.0491359357154;CDC5L:0.0352399653132;PAX6:0.0316625979831;SOX2:0.0288901797304;TFAP2B:0.0285403443157;NKX3-2:0.0236346411624;ONECUT1,2:0.018005720481;NFIX:0.0175601231;IRF7:0.00837662889504;FOXD3:0.0020993458029;MED-1{core}:-0.00245653727192;HSF1,2:-0.0248289284821;MTF1:-0.0266096162505;GCM1,2:-0.0319214054325;HLF:-0.0371266276042;STAT2,4,6:-0.0465518551658;POU6F1:-0.0504361930701;BREu{core}:-0.0524446825997;RUNX1..3:-0.0588752919548;MYFfamily:-0.0810000925764;ZNF148:-0.0920391188563;EGR1..3:-0.108876238079;JUN:-0.14759403146;ATF4:-0.167485385627;FOXP1:-0.172226683949;RBPJ:-0.194857069322;PRDM1:-0.207077168362;NANOG{mouse}:-0.209452969941;ETS1,2:-0.214478582674;CUX2:-0.223218402986;FOXN1:-0.223550444609;OCT4_SOX2{dimer}:-0.228418738273;PAX1,9:-0.240326353084;ZNF384:-0.250855471645;T:-0.255972799485;ALX4:-0.262952811533;PAX8:-0.275437665865;XCPE1{core}:-0.281351583248;TBP:-0.306352256966;KLF4:-0.312149590092;SREBF1,2:-0.31630417434;NFKB1_REL_RELA:-0.318489753994;RFX2..5_RFXANK_RFXAP:-0.3213102523;RORA:-0.325904914608;HNF4A_NR2F1,2:-0.327974388528;ZIC1..3:-0.340260052743;ATF5_CREB3:-0.345724222376;ZBTB16:-0.349716350195;GATA6:-0.352301430187;UFEwm:-0.352737363027;RXR{A,B,G}:-0.354839270454;PAX2:-0.357146575683;NFIL3:-0.363950512938;CEBPA,B_DDIT3:-0.369937804532;CRX:-0.377323870299;HMX1:-0.378902842082;NFY{A,B,C}:-0.38332069527;YY1:-0.385668643257;TLX2:-0.389046554934;ESRRA:-0.396055790345;BPTF:-0.397878290159;SMAD1..7,9:-0.403706899981;SPIB:-0.404249785764;FOXP3:-0.407212080278;RFX1:-0.409940586101;FOX{F1,F2,J1}:-0.412909058758;bHLH_family:-0.448035003234;NR5A1,2:-0.448234937471;FOXQ1:-0.452864021218;SPZ1:-0.465461470616;ZNF423:-0.475024102699;NKX3-1:-0.481931491252;ZNF143:-0.489475898246;ARID5B:-0.49377928471;NRF1:-0.496927095224;PBX1:-0.5012104813;SPI1:-0.55898548015;EP300:-0.569058717462;ELF1,2,4:-0.573836006944;IKZF2:-0.605067533984;TOPORS:-0.613489947647;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.620015070043;PATZ1:-0.623844086926;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.629852213238;SOX{8,9,10}:-0.646053802377;SOX5:-0.6700273768;RXRA_VDR{dimer}:-0.72279396361;SP1:-0.727548143204;CREB1:-0.767912578845;REST:-0.770474611297;ESR1:-0.784898118879;SNAI1..3:-0.815795020814;RREB1:-0.840153776146;HOXA9_MEIS1:-0.865274493261;CDX1,2,4:-0.88179632736;HIF1A:-0.884980140991;ELK1,4_GABP{A,B1}:-0.905397268857;ZEB1:-0.905668211288;MYOD1:-0.935819963599;ATF2:-1.11110796982;LMO2:-1.1357506607;NKX6-1,2:-1.21659362515;ALX1:-1.68854043851;STAT1,3:-1.71566964134;HOX{A6,A7,B6,B7}:-1.78111307697 | |top_motifs=FOXL1:2.10090991755;HBP1_HMGB_SSRP1_UBTF:2.09665051933;FOXA2:1.66294293351;NR3C1:1.64716851785;HMGA1,2:1.36664237429;PDX1:1.32405049653;HOX{A5,B5}:1.12507124598;HAND1,2:1.05909696465;STAT5{A,B}:1.05452077652;TEAD1:1.05279866064;EN1,2:1.04719020866;FOXO1,3,4:1.03241831323;VSX1,2:1.02419582089;GFI1:0.982635219377;NFATC1..3:0.96182487473;TAL1_TCF{3,4,12}:0.956903884692;GFI1B:0.956015419373;SRF:0.924648728237;NR1H4:0.908229834419;MAFB:0.897308517917;ZNF238:0.842699921692;MEF2{A,B,C,D}:0.830062753309;SOX17:0.807935265833;POU3F1..4:0.782292783206;NR6A1:0.755392674208;LHX3,4:0.724726913678;LEF1_TCF7_TCF7L1,2:0.720093831782;POU5F1:0.708312187422;TLX1..3_NFIC{dimer}:0.695998057459;PAX4:0.691128825568;NKX2-2,8:0.635624322303;TFDP1:0.627038983858;EVI1:0.620511340865;ADNP_IRX_SIX_ZHX:0.586918646786;POU1F1:0.586242083927;GTF2A1,2:0.565765454833;FOX{I1,J2}:0.563778545348;GZF1:0.535511071198;TFAP2{A,C}:0.531853841053;TP53:0.530287366202;AIRE:0.496171138618;ZBTB6:0.48712441834;PITX1..3:0.473415976736;MTE{core}:0.422500464804;NANOG:0.41774327682;NKX2-3_NKX2-5:0.417100584622;GTF2I:0.39914496983;FOXM1:0.392970946345;AR:0.392455041751;PPARG:0.387185066624;HOX{A4,D4}:0.38419172619;MYB:0.373144792777;E2F1..5:0.355315821186;NHLH1,2:0.354856427497;NKX2-1,4:0.354241897537;ATF6:0.351387866536;AHR_ARNT_ARNT2:0.334490125768;TFAP4:0.320127357039;MZF1:0.311018285537;DBP:0.310263633278;TEF:0.305948460904;BACH2:0.298733859952;NFE2L1:0.297600257805;TGIF1:0.281286417243;FOSL2:0.253349066552;NFE2L2:0.25007102939;MYBL2:0.206130908407;HIC1:0.205451183575;IKZF1:0.205182170682;TFCP2:0.196373212059;MAZ:0.194887443844;FOS_FOS{B,L1}_JUN{B,D}:0.175841562864;EBF1:0.171174961253;HES1:0.166322233475;XBP1:0.16281501646;PRRX1,2:0.160365361505;PAX3,7:0.159118474509;NFE2:0.14958147814;DMAP1_NCOR{1,2}_SMARC:0.135764396044;ZFP161:0.128675432301;GLI1..3:0.114365008325;FOX{D1,D2}:0.103306947035;POU2F1..3:0.102795574131;GATA4:0.0983539364679;TBX4,5:0.0981467183797;HNF1A:0.0849212159815;PAX5:0.0625861251424;IRF1,2:0.0491359357154;CDC5L:0.0352399653132;PAX6:0.0316625979831;SOX2:0.0288901797304;TFAP2B:0.0285403443157;NKX3-2:0.0236346411624;ONECUT1,2:0.018005720481;NFIX:0.0175601231;IRF7:0.00837662889504;FOXD3:0.0020993458029;MED-1{core}:-0.00245653727192;HSF1,2:-0.0248289284821;MTF1:-0.0266096162505;GCM1,2:-0.0319214054325;HLF:-0.0371266276042;STAT2,4,6:-0.0465518551658;POU6F1:-0.0504361930701;BREu{core}:-0.0524446825997;RUNX1..3:-0.0588752919548;MYFfamily:-0.0810000925764;ZNF148:-0.0920391188563;EGR1..3:-0.108876238079;JUN:-0.14759403146;ATF4:-0.167485385627;FOXP1:-0.172226683949;RBPJ:-0.194857069322;PRDM1:-0.207077168362;NANOG{mouse}:-0.209452969941;ETS1,2:-0.214478582674;CUX2:-0.223218402986;FOXN1:-0.223550444609;OCT4_SOX2{dimer}:-0.228418738273;PAX1,9:-0.240326353084;ZNF384:-0.250855471645;T:-0.255972799485;ALX4:-0.262952811533;PAX8:-0.275437665865;XCPE1{core}:-0.281351583248;TBP:-0.306352256966;KLF4:-0.312149590092;SREBF1,2:-0.31630417434;NFKB1_REL_RELA:-0.318489753994;RFX2..5_RFXANK_RFXAP:-0.3213102523;RORA:-0.325904914608;HNF4A_NR2F1,2:-0.327974388528;ZIC1..3:-0.340260052743;ATF5_CREB3:-0.345724222376;ZBTB16:-0.349716350195;GATA6:-0.352301430187;UFEwm:-0.352737363027;RXR{A,B,G}:-0.354839270454;PAX2:-0.357146575683;NFIL3:-0.363950512938;CEBPA,B_DDIT3:-0.369937804532;CRX:-0.377323870299;HMX1:-0.378902842082;NFY{A,B,C}:-0.38332069527;YY1:-0.385668643257;TLX2:-0.389046554934;ESRRA:-0.396055790345;BPTF:-0.397878290159;SMAD1..7,9:-0.403706899981;SPIB:-0.404249785764;FOXP3:-0.407212080278;RFX1:-0.409940586101;FOX{F1,F2,J1}:-0.412909058758;bHLH_family:-0.448035003234;NR5A1,2:-0.448234937471;FOXQ1:-0.452864021218;SPZ1:-0.465461470616;ZNF423:-0.475024102699;NKX3-1:-0.481931491252;ZNF143:-0.489475898246;ARID5B:-0.49377928471;NRF1:-0.496927095224;PBX1:-0.5012104813;SPI1:-0.55898548015;EP300:-0.569058717462;ELF1,2,4:-0.573836006944;IKZF2:-0.605067533984;TOPORS:-0.613489947647;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.620015070043;PATZ1:-0.623844086926;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.629852213238;SOX{8,9,10}:-0.646053802377;SOX5:-0.6700273768;RXRA_VDR{dimer}:-0.72279396361;SP1:-0.727548143204;CREB1:-0.767912578845;REST:-0.770474611297;ESR1:-0.784898118879;SNAI1..3:-0.815795020814;RREB1:-0.840153776146;HOXA9_MEIS1:-0.865274493261;CDX1,2,4:-0.88179632736;HIF1A:-0.884980140991;ELK1,4_GABP{A,B1}:-0.905397268857;ZEB1:-0.905668211288;MYOD1:-0.935819963599;ATF2:-1.11110796982;LMO2:-1.1357506607;NKX6-1,2:-1.21659362515;ALX1:-1.68854043851;STAT1,3:-1.71566964134;HOX{A6,A7,B6,B7}:-1.78111307697 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10686-109F2;search_select_hide=table117:FF:10686-109F2 | |||
}} | }} | ||
Latest revision as of 14:32, 3 June 2020
| Name: | bone marrow stromal cell line:StromaNKtert |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11931 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11931
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11931
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0481 |
| 10 | 10 | 0.387 |
| 100 | 100 | 0.206 |
| 101 | 101 | 0.839 |
| 102 | 102 | 0.0272 |
| 103 | 103 | 0.382 |
| 104 | 104 | 0.416 |
| 105 | 105 | 0.308 |
| 106 | 106 | 0.322 |
| 107 | 107 | 0.0028 |
| 108 | 108 | 0.957 |
| 109 | 109 | 0.927 |
| 11 | 11 | 0.482 |
| 110 | 110 | 0.871 |
| 111 | 111 | 0.193 |
| 112 | 112 | 0.557 |
| 113 | 113 | 0.327 |
| 114 | 114 | 0.567 |
| 115 | 115 | 0.163 |
| 116 | 116 | 0.692 |
| 117 | 117 | 0.479 |
| 118 | 118 | 0.104 |
| 119 | 119 | 0.325 |
| 12 | 12 | 0.797 |
| 120 | 120 | 0.809 |
| 121 | 121 | 0.963 |
| 122 | 122 | 0.668 |
| 123 | 123 | 0.623 |
| 124 | 124 | 0.724 |
| 125 | 125 | 0.764 |
| 126 | 126 | 0.83 |
| 127 | 127 | 0.634 |
| 128 | 128 | 0.585 |
| 129 | 129 | 0.186 |
| 13 | 13 | 0.915 |
| 130 | 130 | 0.0635 |
| 131 | 131 | 0.622 |
| 132 | 132 | 0.306 |
| 133 | 133 | 0.998 |
| 134 | 134 | 0.192 |
| 135 | 135 | 0.743 |
| 136 | 136 | 0.132 |
| 137 | 137 | 0.521 |
| 138 | 138 | 0.845 |
| 139 | 139 | 0.337 |
| 14 | 14 | 0.227 |
| 140 | 140 | 0.135 |
| 141 | 141 | 0.429 |
| 142 | 142 | 0.648 |
| 143 | 143 | 0.248 |
| 144 | 144 | 0.602 |
| 145 | 145 | 0.0669 |
| 146 | 146 | 0.189 |
| 147 | 147 | 0.582 |
| 148 | 148 | 0.234 |
| 149 | 149 | 0.484 |
| 15 | 15 | 0.213 |
| 150 | 150 | 0.11 |
| 151 | 151 | 0.491 |
| 152 | 152 | 0.306 |
| 153 | 153 | 0.401 |
| 154 | 154 | 0.849 |
| 155 | 155 | 0.116 |
| 156 | 156 | 0.608 |
| 157 | 157 | 0.221 |
| 158 | 158 | 0.568 |
| 159 | 159 | 0.644 |
| 16 | 16 | 0.509 |
| 160 | 160 | 0.938 |
| 161 | 161 | 0.641 |
| 162 | 162 | 0.816 |
| 163 | 163 | 0.966 |
| 164 | 164 | 0.0822 |
| 165 | 165 | 0.86 |
| 166 | 166 | 0.436 |
| 167 | 167 | 0.901 |
| 168 | 168 | 0.415 |
| 169 | 169 | 0.434 |
| 17 | 17 | 0.163 |
| 18 | 18 | 0.262 |
| 19 | 19 | 0.111 |
| 2 | 2 | 0.738 |
| 20 | 20 | 0.929 |
| 21 | 21 | 0.403 |
| 22 | 22 | 0.431 |
| 23 | 23 | 0.0101 |
| 24 | 24 | 0.44 |
| 25 | 25 | 0.528 |
| 26 | 26 | 0.286 |
| 27 | 27 | 0.887 |
| 28 | 28 | 0.723 |
| 29 | 29 | 0.197 |
| 3 | 3 | 0.654 |
| 30 | 30 | 0.989 |
| 31 | 31 | 0.508 |
| 32 | 32 | 0.0604 |
| 33 | 33 | 0.764 |
| 34 | 34 | 0.596 |
| 35 | 35 | 0.813 |
| 36 | 36 | 0.976 |
| 37 | 37 | 0.799 |
| 38 | 38 | 0.464 |
| 39 | 39 | 0.499 |
| 4 | 4 | 0.883 |
| 40 | 40 | 0.352 |
| 41 | 41 | 0.45 |
| 42 | 42 | 0.495 |
| 43 | 43 | 0.219 |
| 44 | 44 | 0.207 |
| 45 | 45 | 0.523 |
| 46 | 46 | 0.149 |
| 47 | 47 | 0.87 |
| 48 | 48 | 0.995 |
| 49 | 49 | 0.139 |
| 5 | 5 | 0.257 |
| 50 | 50 | 0.665 |
| 51 | 51 | 0.68 |
| 52 | 52 | 0.832 |
| 53 | 53 | 0.926 |
| 54 | 54 | 0.124 |
| 55 | 55 | 0.0399 |
| 56 | 56 | 0.619 |
| 57 | 57 | 0.108 |
| 58 | 58 | 0.76 |
| 59 | 59 | 0.164 |
| 6 | 6 | 0.94 |
| 60 | 60 | 0.643 |
| 61 | 61 | 0.578 |
| 62 | 62 | 0.45 |
| 63 | 63 | 0.451 |
| 64 | 64 | 0.63 |
| 65 | 65 | 0.201 |
| 66 | 66 | 0.117 |
| 67 | 67 | 0.396 |
| 68 | 68 | 0.812 |
| 69 | 69 | 0.979 |
| 7 | 7 | 0.865 |
| 70 | 70 | 0.627 |
| 71 | 71 | 0.539 |
| 72 | 72 | 0.554 |
| 73 | 73 | 0.738 |
| 74 | 74 | 0.124 |
| 75 | 75 | 0.207 |
| 76 | 76 | 0.166 |
| 77 | 77 | 0.182 |
| 78 | 78 | 0.727 |
| 79 | 79 | 0.968 |
| 8 | 8 | 0.175 |
| 80 | 80 | 0.137 |
| 81 | 81 | 0.362 |
| 82 | 82 | 0.642 |
| 83 | 83 | 0.088 |
| 84 | 84 | 0.362 |
| 85 | 85 | 0.342 |
| 86 | 86 | 0.791 |
| 87 | 87 | 0.902 |
| 88 | 88 | 0.618 |
| 89 | 89 | 0.866 |
| 9 | 9 | 0.649 |
| 90 | 90 | 0.369 |
| 91 | 91 | 0.663 |
| 92 | 92 | 0.379 |
| 93 | 93 | 0.453 |
| 94 | 94 | 0.0727 |
| 95 | 95 | 0.0537 |
| 96 | 96 | 0.0771 |
| 97 | 97 | 0.0439 |
| 98 | 98 | 0.697 |
| 99 | 99 | 0.182 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11931
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103296 bone marrow stromal cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0007195 (stroma of bone marrow)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103296 (bone marrow stromal cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
