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(Created page with "{{f5samples |id=FF:12181-129A3 |name=Whole blood (ribopure), donor090309, donation3 (repurified) |sample_id=12181 |rna_tube_id=129A3 |rna_box=129 |rna_position=A3 |samp...")
 
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{{f5samples
{{f5samples
|id=FF:12181-129A3
|DRA_sample_Accession=RNA-Seq@SAMD00013674
|name=Whole blood (ribopure), donor090309, donation3 (repurified)
|accession_numbers=CAGE;DRX008531;DRR009403;DRZ000828;DRZ002213;DRZ012178;DRZ013563!RNA-Seq;DRX012355;DRR013803;DRZ003004;
|sample_id=12181
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|rna_tube_id=129A3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|rna_box=129
|rna_position=A3
|sample_cell_lot=090309-04
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.97000
|rna_od260/280=1.98000
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Matched_genome_OSC(contact:Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=14.10000
|rna_concentration=1.17400
|sample_note=
|profile_hcage=CNhs11948,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=RDhi10002,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000178,UBERON:0000179,UBERON:0000463,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0001009,UBERON:0001062,UBERON:0002193,UBERON:0002390,UBERON:0004535,UBERON:0007023
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0010053,FF:0000004,FF:0000281
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chrX:131623044..131623089,-!p1@MBNL3!3.00!3955.63!MBNL3;;chr11:47400078..47400106,-!p1@SPI1!2.71!508.69!SPI1;;chrX:131623026..131623039,-!p5@MBNL3!2.58!382.80!MBNL3;;chr12:54694653..54694672,-!p2@NFE2!2.56!358.88!NFE2;;chr12:54694758..54694805,-!p1@NFE2!2.46!340.65!NFE2;;chrX:70315688..70315709,+!p1@FOXO4!2.39!553.13!FOXO4;;chr7:28220506..28220552,-!p3@JAZF1!2.38!236.40!JAZF1;;chr2:68592406..68592424,+!p1@PLEK!2.32!207.92!PLEK;;chrX:131622958..131622978,-!p3@MBNL3!2.31!254.06!MBNL3;;chr10:51585449..51585487,+!p6@NCOA4!2.29!192.54!NCOA4;;chrX:131622988..131623006,-!p8@MBNL3!2.27!184.57!MBNL3;;chr7:28220354..28220441,-!p1@JAZF1!2.26!2600.44!JAZF1;;chr12:54694807..54694832,-!p3@NFE2!2.23!169.19!NFE2;;chr19:13213511..13213545,-!p2@LYL1!2.13!146.40!LYL1;;chr10:51572339..51572376,+!p4@NCOA4!2.09!264.32!NCOA4;;chr11:47400062..47400077,-!p2@SPI1!2.02!103.11!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.98!508.13!MXD1;;chr19:12998003..12998021,-!p1@KLF1!1.94!86.02!KLF1;;chr3:128212033..128212051,-!p1@GATA2!1.94!85.45!GATA2;;chr10:51572408..51572454,+!p3@NCOA4!1.93!469.39!NCOA4;;chr10:51585430..51585448,+!p7@NCOA4!1.81!63.80!NCOA4;;chr7:50344289..50344323,+!p1@IKZF1!1.80!62.66!IKZF1;;chr10:111985713..111985774,+!p2@MXI1!1.78!529.77!MXI1;;chr16:85932760..85932775,+!p1@IRF8!1.75!55.26!IRF8;;chr1:47697965..47697991,-!p7@TAL1!1.74!53.55!TAL1;;chr21:34442439..34442455,+!p1@OLIG1!1.73!52.98!OLIG1;;chr9:117150254..117150271,-!p1@AKNA!1.69!128.17!AKNA;;chr7:50343634..50343717,+!p2@IKZF1!1.67!46.14!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!1.67!45.57!SPI1;;chr19:13213555..13213568,-!p5@LYL1!1.67!45.57!LYL1;;chr12:54778471..54778528,-!p1@ZNF385A!1.65!43.86!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.65!43.29!SPI1;;chr2:148778973..148779035,+!p3@MBD5!1.63!105.38!MBD5;;chr1:23857325..23857416,-!p2@E2F2!1.62!47.28!E2F2;;chr11:47400032..47400043,-!p5@SPI1!1.61!39.31!SPI1;;chr7:28725715..28725727,+!p3@CREB5!1.60!45.57!CREB5;;chr1:43148855..43148908,+!p4@YBX1!1.57!56.40!YBX1;;chr19:13213662..13213686,-!p1@LYL1!1.57!52.41!LYL1;;chr17:79881433..79881452,-!p6@MAFG!1.57!35.89!MAFG;;chr1:25256756..25256774,-!p1@RUNX3!1.56!65.51!RUNX3;;chr5:133451294..133451310,+!p2@TCF7!1.56!35.32!TCF7;;chr17:45810594..45810608,+!p1@TBX21!1.56!35.32!TBX21;;chrX:48644984..48645005,+!p1@GATA1!1.55!34.75!GATA1;;chr3:141748010..141748030,-!p8@TFDP2!1.54!33.61!TFDP2;;chr4:109087445..109087463,-!p1@LEF1!1.53!33.04!LEF1;;chr2:68592394..68592405,+!p2@PLEK!1.52!32.47!PLEK;;chr3:27763807..27763822,-!p1@EOMES!1.52!31.90!EOMES;;chr10:111967345..111967422,+!p1@MXI1!1.50!479.64!MXI1;;chr20:50159198..50159299,-!p1@NFATC2!1.50!44.43!NFATC2;;chr11:47400045..47400060,-!p6@SPI1!1.50!30.76!SPI1;;chr19:16435625..16435682,+!p1@KLF2!1.49!908.02!KLF2;;chr12:10875831..10876025,-!p1@CSDA!1.48!2285.42!CSDA;;chr3:187463179..187463201,-!p2@BCL6!1.48!115.64!BCL6;;chr20:56195474..56195506,-!p1@ZBP1!1.48!29.05!ZBP1;;chr5:176735063..176735088,-!p2@MXD3!1.48!29.05!MXD3;;chr9:135854091..135854159,+!p1@GFI1B!1.47!28.48!GFI1B;;chr6:108881012..108881034,+!p3@FOXO3!1.46!96.27!FOXO3;;chr19:50922187..50922204,+!p1@SPIB!1.46!27.91!SPIB;;chr2:231090433..231090469,+!p1@SP140!1.43!26.20!SP140;;chr19:13213634..13213645,-!p8@LYL1!1.43!25.63!LYL1;;chr2:70167296..70167306,+!p3@MXD1!1.42!38.74!MXD1;;chr6:144385698..144385742,-!p2@PLAGL1!1.42!30.76!PLAGL1;;chr5:133450365..133450444,+!p1@TCF7!1.41!110.51!TCF7;;chr12:54689532..54689551,-!p4@NFE2!1.41!24.49!NFE2;;chr3:63953435..63953499,+!p1@ATXN7!1.41!24.49!ATXN7;;chr7:28725740..28725778,+!p1@CREB5!1.39!202.79!CREB5;;chr6:391743..391759,+!p1@IRF4!1.39!23.36!IRF4;;chr12:54689552..54689574,-!p6@NFE2!1.39!23.36!NFE2;;chr2:28618532..28618610,+!p4@FOSL2!1.38!39.31!FOSL2;;chrX:106960285..106960299,-!p1@TSC22D3!1.33!530.91!TSC22D3;;chrX:106960180..106960197,-!p2@TSC22D3!1.33!76.33!TSC22D3;;chr2:208031943..208031978,-!p5@KLF7!1.33!27.34!KLF7;;chr11:128563948..128564003,+!p1@FLI1!1.32!231.85!FLI1;;chr1:23857698..23857733,-!p1@E2F2!1.32!35.89!E2F2;;chr1:23857128..23857141,-!p6@E2F2!1.32!19.94!E2F2;;chr7:149470641..149470694,-!p1@ZNF467!1.31!86.02!ZNF467;;chr2:192015701..192015743,-!p1@STAT4!1.31!26.77!STAT4;;chr2:100759010..100759035,-!p1@AFF3!1.31!19.37!AFF3;;chr1:47697881..47697910,-!p4@TAL1!1.31!19.37!TAL1;;chr7:50344251..50344288,+!p3@IKZF1!1.27!17.66!IKZF1;;chr2:70142189..70142223,+!p2@MXD1!1.26!120.77!MXD1;;chr20:56195525..56195556,-!p2@ZBP1!1.26!17.09!ZBP1;;chr16:3313791..3313834,+!p2@ZNF263!1.25!36.46!ZNF263;;chr10:8096631..8096660,+!p1@GATA3!1.25!20.51!GATA3;;chr4:185395633..185395651,-!p2@IRF2!1.24!26.20!IRF2;;chr1:43148792..43148849,+!p2@YBX1!1.23!59.81!YBX1;;chrX:107018836..107018862,-!p8@TSC22D3!1.23!15.95!TSC22D3;;chr11:111249993..111250006,-!p1@POU2AF1!1.21!15.38!POU2AF1;;chr6:91006518..91006570,-!p1@BACH2!1.20!33.61!BACH2;;chr1:8484007..8484061,-!p13@RERE!1.20!18.80!RERE;;chr10:111985777..111985788,+!p4@MXI1!1.20!14.81!MXI1;;chr5:131826457..131826514,-!p1@IRF1!1.19!554.27!IRF1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation3.CNhs11948.12181-129A3.hg38.nobarcode.ctss.bed.gz
|id=FF:12181-129A3
|is_a=EFO:0002091;;FF:0000002;;FF:0000281
|is_obsolete=
|library_id=CNhs11948!RDhi10002
|library_id_phase_based=2:CNhs11948
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12181
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12181
|name=Whole blood (ribopure), donor090309, donation3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11948,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=129
|rna_catalog_number=
|rna_concentration=1.174
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=1.97
|rna_od260/280=1.98
|rna_position=A3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=129A3
|rna_weight_ug=14.1
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=090309-04
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Matched_genome_OSC(contact:Al Forrest)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.36433523492612e-245!GO:0043227;membrane-bound organelle;4.45968738552051e-129!GO:0005737;cytoplasm;4.45968738552051e-129!GO:0043231;intracellular membrane-bound organelle;6.11101239818894e-129!GO:0043226;organelle;2.11342967361799e-125!GO:0043229;intracellular organelle;9.2985553328764e-125!GO:0044444;cytoplasmic part;1.23322585834908e-81!GO:0044422;organelle part;5.02551910169905e-71!GO:0044446;intracellular organelle part;1.08856508117667e-69!GO:0043170;macromolecule metabolic process;6.51408915941411e-65!GO:0044237;cellular metabolic process;9.67149050044855e-65!GO:0005515;protein binding;4.34663704706077e-64!GO:0044238;primary metabolic process;1.72986538102209e-63!GO:0032991;macromolecular complex;3.73151113916571e-63!GO:0005634;nucleus;8.85539089074938e-60!GO:0003723;RNA binding;2.44166885454317e-48!GO:0044428;nuclear part;1.80666822942831e-47!GO:0030529;ribonucleoprotein complex;2.15958433639032e-45!GO:0019538;protein metabolic process;1.55946710324845e-44!GO:0033036;macromolecule localization;8.16867786983616e-42!GO:0015031;protein transport;1.30050416131278e-41!GO:0044267;cellular protein metabolic process;7.94949764791519e-41!GO:0044260;cellular macromolecule metabolic process;7.94949764791519e-41!GO:0045184;establishment of protein localization;1.58315818160169e-40!GO:0043283;biopolymer metabolic process;2.91990821107279e-39!GO:0008104;protein localization;3.87883085227196e-39!GO:0043233;organelle lumen;2.1389065372916e-38!GO:0031974;membrane-enclosed lumen;2.1389065372916e-38!GO:0005829;cytosol;1.11503042644546e-34!GO:0043234;protein complex;1.15052329884543e-34!GO:0006412;translation;2.67777413790785e-34!GO:0010467;gene expression;3.69547678293074e-33!GO:0016071;mRNA metabolic process;3.25703689128723e-30!GO:0031981;nuclear lumen;7.79468041102176e-30!GO:0006396;RNA processing;1.86949854860621e-29!GO:0031090;organelle membrane;2.63047282557652e-29!GO:0005739;mitochondrion;3.20842362589426e-28!GO:0016043;cellular component organization and biogenesis;1.34363647212417e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.34680858251321e-27!GO:0008380;RNA splicing;3.96185451357516e-26!GO:0046907;intracellular transport;7.90048729701145e-26!GO:0009059;macromolecule biosynthetic process;8.23709864217056e-26!GO:0012501;programmed cell death;1.97531586280576e-25!GO:0006915;apoptosis;1.97531586280576e-25!GO:0006397;mRNA processing;4.50110018356219e-25!GO:0006886;intracellular protein transport;8.1499225822149e-25!GO:0008219;cell death;2.12446205635364e-24!GO:0016265;death;2.12446205635364e-24!GO:0005840;ribosome;2.42989504673035e-24!GO:0031967;organelle envelope;1.55952344017821e-23!GO:0031975;envelope;2.26082294868999e-23!GO:0065003;macromolecular complex assembly;2.62321098459804e-22!GO:0044445;cytosolic part;3.00429719285888e-22!GO:0009058;biosynthetic process;1.04141859504472e-21!GO:0003735;structural constituent of ribosome;1.06408032051695e-21!GO:0044249;cellular biosynthetic process;1.37544719461226e-21!GO:0005654;nucleoplasm;5.1523739257809e-21!GO:0051649;establishment of cellular localization;1.09315466803714e-20!GO:0051641;cellular localization;1.74195845104277e-20!GO:0043412;biopolymer modification;3.00096493620883e-20!GO:0033279;ribosomal subunit;3.05740751458509e-20!GO:0044429;mitochondrial part;5.31044507010797e-20!GO:0022607;cellular component assembly;8.26708214637394e-20!GO:0000166;nucleotide binding;1.10824941722886e-19!GO:0008134;transcription factor binding;1.90188259046416e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.1393522973367e-19!GO:0006464;protein modification process;1.2551527231821e-18!GO:0005681;spliceosome;1.82380220634158e-18!GO:0006512;ubiquitin cycle;2.37071219067282e-18!GO:0042981;regulation of apoptosis;2.98324090910497e-18!GO:0043067;regulation of programmed cell death;5.40741321612757e-18!GO:0002376;immune system process;1.87350309205848e-17!GO:0044451;nucleoplasm part;3.26642615251341e-17!GO:0043687;post-translational protein modification;5.45736248982975e-17!GO:0044265;cellular macromolecule catabolic process;2.95779242896505e-16!GO:0016192;vesicle-mediated transport;3.36624963887953e-16!GO:0006996;organelle organization and biogenesis;5.19596728576893e-16!GO:0016070;RNA metabolic process;5.67574103250819e-16!GO:0003676;nucleic acid binding;6.19509865949394e-16!GO:0016462;pyrophosphatase activity;3.5888208206696e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.5888208206696e-15!GO:0032553;ribonucleotide binding;4.13137249969432e-15!GO:0032555;purine ribonucleotide binding;4.13137249969432e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;4.27866013681022e-15!GO:0006119;oxidative phosphorylation;4.64057137056025e-15!GO:0005740;mitochondrial envelope;5.94852672663853e-15!GO:0007243;protein kinase cascade;6.68908826967585e-15!GO:0017111;nucleoside-triphosphatase activity;1.04086796031873e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.33236242269818e-14!GO:0031966;mitochondrial membrane;2.51856450315815e-14!GO:0007242;intracellular signaling cascade;2.87332833267059e-14!GO:0017076;purine nucleotide binding;3.3822594970284e-14!GO:0006259;DNA metabolic process;3.57399891297393e-14!GO:0016874;ligase activity;3.84929400276704e-14!GO:0019866;organelle inner membrane;1.18882289360419e-13!GO:0050794;regulation of cellular process;1.36652222499401e-13!GO:0016604;nuclear body;1.5580951970569e-13!GO:0019941;modification-dependent protein catabolic process;4.911409561585e-13!GO:0043632;modification-dependent macromolecule catabolic process;4.911409561585e-13!GO:0006793;phosphorus metabolic process;5.02302700146182e-13!GO:0006796;phosphate metabolic process;5.02302700146182e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;5.46053356922601e-13!GO:0006913;nucleocytoplasmic transport;5.89342885555881e-13!GO:0006605;protein targeting;7.38077581387714e-13!GO:0006511;ubiquitin-dependent protein catabolic process;7.51439067156381e-13!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.06384660173798e-12!GO:0051169;nuclear transport;1.12506248135323e-12!GO:0048770;pigment granule;1.15057779238737e-12!GO:0042470;melanosome;1.15057779238737e-12!GO:0044257;cellular protein catabolic process;1.32566124415549e-12!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.01527195567604e-12!GO:0043285;biopolymer catabolic process;2.39629903445068e-12!GO:0022618;protein-RNA complex assembly;2.59648091049249e-12!GO:0005794;Golgi apparatus;3.48235556516954e-12!GO:0009057;macromolecule catabolic process;4.04854043010612e-12!GO:0003712;transcription cofactor activity;4.31629508712707e-12!GO:0016310;phosphorylation;4.9383857469541e-12!GO:0005743;mitochondrial inner membrane;5.77080206156434e-12!GO:0006955;immune response;7.40475153246557e-12!GO:0005768;endosome;1.03097225802486e-11!GO:0051246;regulation of protein metabolic process;1.58104700086312e-11!GO:0016607;nuclear speck;1.95009978003297e-11!GO:0012505;endomembrane system;2.20186757983186e-11!GO:0044248;cellular catabolic process;5.14617414738781e-11!GO:0005524;ATP binding;8.21670170652234e-11!GO:0043069;negative regulation of programmed cell death;8.52164675401734e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.942760345619e-11!GO:0032559;adenyl ribonucleotide binding;1.0690874537905e-10!GO:0015934;large ribosomal subunit;1.27966640353925e-10!GO:0043066;negative regulation of apoptosis;1.28731356022268e-10!GO:0015935;small ribosomal subunit;1.62048930206283e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.64989824129054e-10!GO:0043228;non-membrane-bound organelle;1.83837268093276e-10!GO:0043232;intracellular non-membrane-bound organelle;1.83837268093276e-10!GO:0050789;regulation of biological process;2.46740786794326e-10!GO:0048523;negative regulation of cellular process;2.97550735153384e-10!GO:0006916;anti-apoptosis;3.33920862323555e-10!GO:0044455;mitochondrial membrane part;3.54903666068078e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.68764423003363e-10!GO:0008639;small protein conjugating enzyme activity;5.21641565721003e-10!GO:0019787;small conjugating protein ligase activity;6.69430339296895e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.82333601640705e-10!GO:0008135;translation factor activity, nucleic acid binding;7.25287981870698e-10!GO:0005773;vacuole;8.1613813709365e-10!GO:0030554;adenyl nucleotide binding;8.58584259737904e-10!GO:0006323;DNA packaging;8.81935549159707e-10!GO:0004842;ubiquitin-protein ligase activity;1.26407153532184e-09!GO:0005635;nuclear envelope;1.31654793355515e-09!GO:0051186;cofactor metabolic process;1.32894189547133e-09!GO:0005746;mitochondrial respiratory chain;1.84210609009409e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.87022639962112e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.02206756398307e-09!GO:0000375;RNA splicing, via transesterification reactions;2.02206756398307e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.02206756398307e-09!GO:0006457;protein folding;2.25134930439274e-09!GO:0048193;Golgi vesicle transport;2.87233813268807e-09!GO:0006366;transcription from RNA polymerase II promoter;3.03655364841547e-09!GO:0065009;regulation of a molecular function;3.0442989188101e-09!GO:0030163;protein catabolic process;4.53990067379947e-09!GO:0007264;small GTPase mediated signal transduction;7.73607577147694e-09!GO:0016568;chromatin modification;9.01008154060168e-09!GO:0000323;lytic vacuole;9.22022488222692e-09!GO:0005764;lysosome;9.22022488222692e-09!GO:0017038;protein import;9.37990139753968e-09!GO:0050136;NADH dehydrogenase (quinone) activity;1.00891560242926e-08!GO:0003954;NADH dehydrogenase activity;1.00891560242926e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.00891560242926e-08!GO:0065007;biological regulation;1.07712203293776e-08!GO:0019222;regulation of metabolic process;1.11485146154555e-08!GO:0048519;negative regulation of biological process;1.28761310664652e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.64071350943188e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.1294346490733e-08!GO:0043065;positive regulation of apoptosis;3.27899770664326e-08!GO:0003713;transcription coactivator activity;3.43504479447401e-08!GO:0005730;nucleolus;4.2370736778167e-08!GO:0005770;late endosome;4.27173710316697e-08!GO:0043068;positive regulation of programmed cell death;5.29753155115389e-08!GO:0019829;cation-transporting ATPase activity;5.34248771798683e-08!GO:0016881;acid-amino acid ligase activity;5.39307372414323e-08!GO:0019899;enzyme binding;5.56351036358268e-08!GO:0003924;GTPase activity;6.82224946437027e-08!GO:0006446;regulation of translational initiation;6.86788620309585e-08!GO:0003743;translation initiation factor activity;7.48320864060269e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.89526390200649e-08!GO:0031965;nuclear membrane;8.64368103516115e-08!GO:0051276;chromosome organization and biogenesis;9.51097139269345e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.0304272516879e-07!GO:0042773;ATP synthesis coupled electron transport;1.0304272516879e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.04013323395118e-07!GO:0016887;ATPase activity;1.08454979462904e-07!GO:0006917;induction of apoptosis;1.28934323253351e-07!GO:0051170;nuclear import;1.2934247368326e-07!GO:0044440;endosomal part;1.48945823923711e-07!GO:0010008;endosome membrane;1.48945823923711e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.50781921768264e-07!GO:0006606;protein import into nucleus;1.73714257669212e-07!GO:0030964;NADH dehydrogenase complex (quinone);2.00400705512071e-07!GO:0045271;respiratory chain complex I;2.00400705512071e-07!GO:0005747;mitochondrial respiratory chain complex I;2.00400705512071e-07!GO:0006413;translational initiation;2.01856379537949e-07!GO:0009150;purine ribonucleotide metabolic process;2.06058886512909e-07!GO:0012502;induction of programmed cell death;2.17017961790447e-07!GO:0031980;mitochondrial lumen;2.17017961790447e-07!GO:0005759;mitochondrial matrix;2.17017961790447e-07!GO:0009259;ribonucleotide metabolic process;2.33059432902245e-07!GO:0042623;ATPase activity, coupled;2.62913321556596e-07!GO:0045321;leukocyte activation;2.73750719985337e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.25525860554822e-07!GO:0005525;GTP binding;3.27525327671067e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.03706433352091e-07!GO:0006163;purine nucleotide metabolic process;5.02655490426666e-07!GO:0060090;molecular adaptor activity;5.03003902141926e-07!GO:0016787;hydrolase activity;5.25771180521452e-07!GO:0009615;response to virus;5.42093510108165e-07!GO:0006461;protein complex assembly;5.47597498606209e-07!GO:0006950;response to stress;5.60870803707256e-07!GO:0015986;ATP synthesis coupled proton transport;5.70784547584664e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.70784547584664e-07!GO:0009152;purine ribonucleotide biosynthetic process;6.33937260462474e-07!GO:0032446;protein modification by small protein conjugation;6.42613847109345e-07!GO:0006417;regulation of translation;7.10459859041633e-07!GO:0009967;positive regulation of signal transduction;7.12218371119568e-07!GO:0051082;unfolded protein binding;1.03351546238138e-06!GO:0016567;protein ubiquitination;1.11258655232469e-06!GO:0001775;cell activation;1.33803512741839e-06!GO:0006732;coenzyme metabolic process;1.51173253136953e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.54404806180858e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.54404806180858e-06!GO:0006164;purine nucleotide biosynthetic process;1.61712937737596e-06!GO:0009260;ribonucleotide biosynthetic process;2.06297906561258e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.06408376553983e-06!GO:0044453;nuclear membrane part;2.21182178374632e-06!GO:0016564;transcription repressor activity;2.21309500532517e-06!GO:0005774;vacuolar membrane;2.2866958684665e-06!GO:0046034;ATP metabolic process;2.3149951960098e-06!GO:0005783;endoplasmic reticulum;2.3183867376098e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.3183867376098e-06!GO:0007265;Ras protein signal transduction;2.54022381910442e-06!GO:0046649;lymphocyte activation;2.58375396562787e-06!GO:0031323;regulation of cellular metabolic process;2.58375396562787e-06!GO:0002764;immune response-regulating signal transduction;2.59046747625682e-06!GO:0008565;protein transporter activity;2.66091827997578e-06!GO:0008632;apoptotic program;2.98412298228168e-06!GO:0016563;transcription activator activity;3.18255868149372e-06!GO:0050790;regulation of catalytic activity;3.20625732988163e-06!GO:0032561;guanyl ribonucleotide binding;3.46194043771827e-06!GO:0019001;guanyl nucleotide binding;3.46194043771827e-06!GO:0048522;positive regulation of cellular process;3.46667142925009e-06!GO:0007049;cell cycle;3.59800529395532e-06!GO:0050657;nucleic acid transport;3.8838546310607e-06!GO:0051236;establishment of RNA localization;3.8838546310607e-06!GO:0050658;RNA transport;3.8838546310607e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.89316531881147e-06!GO:0030097;hemopoiesis;3.91583227024831e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.0292747211337e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.0292747211337e-06!GO:0009141;nucleoside triphosphate metabolic process;4.13247219652429e-06!GO:0006754;ATP biosynthetic process;4.79238238252005e-06!GO:0006753;nucleoside phosphate metabolic process;4.79238238252005e-06!GO:0006403;RNA localization;4.81781198098271e-06!GO:0008047;enzyme activator activity;4.90940738389841e-06!GO:0002757;immune response-activating signal transduction;5.32692664294333e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.47644933483122e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.47644933483122e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.86374709866366e-06!GO:0006333;chromatin assembly or disassembly;5.9097557813694e-06!GO:0031326;regulation of cellular biosynthetic process;5.92099321781369e-06!GO:0009056;catabolic process;6.01516270949457e-06!GO:0043566;structure-specific DNA binding;6.27546767835217e-06!GO:0005765;lysosomal membrane;7.8735984902756e-06!GO:0001772;immunological synapse;8.44863235181483e-06!GO:0030695;GTPase regulator activity;8.46965840999718e-06!GO:0044437;vacuolar part;9.92674845774961e-06!GO:0002768;immune response-regulating cell surface receptor signaling pathway;1.06942015533676e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.08329057583814e-05!GO:0000151;ubiquitin ligase complex;1.09680187941456e-05!GO:0051188;cofactor biosynthetic process;1.19160878420901e-05!GO:0005793;ER-Golgi intermediate compartment;1.28752698297046e-05!GO:0048518;positive regulation of biological process;1.39307318574252e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.43249077212891e-05!GO:0030218;erythrocyte differentiation;1.47251877525485e-05!GO:0031324;negative regulation of cellular metabolic process;1.53633942783869e-05!GO:0006974;response to DNA damage stimulus;1.57266597547099e-05!GO:0009966;regulation of signal transduction;1.62921307846685e-05!GO:0004674;protein serine/threonine kinase activity;2.01820823361235e-05!GO:0065004;protein-DNA complex assembly;2.22102593113422e-05!GO:0002429;immune response-activating cell surface receptor signaling pathway;2.23719849183191e-05!GO:0045786;negative regulation of progression through cell cycle;2.28228497966471e-05!GO:0044431;Golgi apparatus part;2.2950507403697e-05!GO:0003697;single-stranded DNA binding;2.29677504334392e-05!GO:0009889;regulation of biosynthetic process;2.44359244724522e-05!GO:0031902;late endosome membrane;2.44373391988678e-05!GO:0016197;endosome transport;2.45623287503332e-05!GO:0009892;negative regulation of metabolic process;2.71290637989259e-05!GO:0005070;SH3/SH2 adaptor activity;2.95395732024665e-05!GO:0005643;nuclear pore;3.0219325709259e-05!GO:0048475;coated membrane;3.08606389322813e-05!GO:0030117;membrane coat;3.08606389322813e-05!GO:0051028;mRNA transport;3.18721545326767e-05!GO:0031982;vesicle;3.23663276629767e-05!GO:0016740;transferase activity;3.39352004768706e-05!GO:0051726;regulation of cell cycle;3.50683355327622e-05!GO:0000785;chromatin;3.792273332093e-05!GO:0042110;T cell activation;3.792273332093e-05!GO:0002520;immune system development;3.88232098170903e-05!GO:0000074;regulation of progression through cell cycle;4.03742480315103e-05!GO:0004386;helicase activity;4.44428739815135e-05!GO:0030099;myeloid cell differentiation;4.75163255499068e-05!GO:0006401;RNA catabolic process;4.77252447479092e-05!GO:0030120;vesicle coat;4.77252447479092e-05!GO:0030662;coated vesicle membrane;4.77252447479092e-05!GO:0016044;membrane organization and biogenesis;5.08757879938032e-05!GO:0010468;regulation of gene expression;5.80693684063864e-05!GO:0008026;ATP-dependent helicase activity;5.91061849122178e-05!GO:0051336;regulation of hydrolase activity;6.60773238213166e-05!GO:0009117;nucleotide metabolic process;7.53059948539831e-05!GO:0000245;spliceosome assembly;8.01280101370232e-05!GO:0031252;leading edge;8.27910486941749e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.78256735909977e-05!GO:0044432;endoplasmic reticulum part;9.58660997018144e-05!GO:0045259;proton-transporting ATP synthase complex;9.69059130721925e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.77569551966511e-05!GO:0051168;nuclear export;9.79103429247247e-05!GO:0016481;negative regulation of transcription;9.81729671921433e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000110451582142234!GO:0015399;primary active transmembrane transporter activity;0.000110451582142234!GO:0003714;transcription corepressor activity;0.000111004972733985!GO:0009060;aerobic respiration;0.000123387879542301!GO:0004298;threonine endopeptidase activity;0.000125329587857595!GO:0005083;small GTPase regulator activity;0.000131906025010451!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000143425930969588!GO:0031410;cytoplasmic vesicle;0.000147310345705088!GO:0051251;positive regulation of lymphocyte activation;0.000147488495416185!GO:0009055;electron carrier activity;0.000150754027766548!GO:0005096;GTPase activator activity;0.000152768768891852!GO:0030532;small nuclear ribonucleoprotein complex;0.00015558355986528!GO:0065002;intracellular protein transport across a membrane;0.000163389096551363!GO:0008270;zinc ion binding;0.000166000938851815!GO:0046930;pore complex;0.000168182972272019!GO:0006752;group transfer coenzyme metabolic process;0.000172319246827305!GO:0032940;secretion by cell;0.00018760385340751!GO:0006888;ER to Golgi vesicle-mediated transport;0.000189222300536104!GO:0006350;transcription;0.000195213605684486!GO:0048468;cell development;0.000206342317675851!GO:0031988;membrane-bound vesicle;0.000209597492242144!GO:0006402;mRNA catabolic process;0.000209597492242144!GO:0005057;receptor signaling protein activity;0.000211177285673062!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000211916383257406!GO:0005885;Arp2/3 protein complex;0.000214732736924438!GO:0006613;cotranslational protein targeting to membrane;0.000214732736924438!GO:0043492;ATPase activity, coupled to movement of substances;0.000214732736924438!GO:0048534;hemopoietic or lymphoid organ development;0.000223972274892679!GO:0005769;early endosome;0.000226261883818253!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000229861952830696!GO:0018193;peptidyl-amino acid modification;0.000264021184981199!GO:0016301;kinase activity;0.000312074031934087!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000326367107415588!GO:0006281;DNA repair;0.000349242654468448!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000383469763193481!GO:0046914;transition metal ion binding;0.000383469763193481!GO:0050851;antigen receptor-mediated signaling pathway;0.000383850055668849!GO:0009607;response to biotic stimulus;0.000385050876063184!GO:0003724;RNA helicase activity;0.000409596091045327!GO:0042101;T cell receptor complex;0.000409968180978024!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000413425053875931!GO:0005761;mitochondrial ribosome;0.000414289669028319!GO:0000313;organellar ribosome;0.000414289669028319!GO:0000139;Golgi membrane;0.00041768588831501!GO:0009108;coenzyme biosynthetic process;0.000431658481060481!GO:0005694;chromosome;0.000431658481060481!GO:0001816;cytokine production;0.000444548176925347!GO:0016023;cytoplasmic membrane-bound vesicle;0.000476800778910712!GO:0006468;protein amino acid phosphorylation;0.000480890169396568!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000557766955998926!GO:0051427;hormone receptor binding;0.000557766955998926!GO:0005798;Golgi-associated vesicle;0.000559496436766368!GO:0044427;chromosomal part;0.000576171224246341!GO:0042254;ribosome biogenesis and assembly;0.000576171224246341!GO:0005789;endoplasmic reticulum membrane;0.000583002889488014!GO:0030036;actin cytoskeleton organization and biogenesis;0.000601876222120015!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000620720842442984!GO:0045045;secretory pathway;0.000773227979109234!GO:0045333;cellular respiration;0.000837471229076136!GO:0006650;glycerophospholipid metabolic process;0.0008943023071281!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00094265712426208!GO:0035257;nuclear hormone receptor binding;0.000973829463418476!GO:0006919;caspase activation;0.00103899813099303!GO:0046822;regulation of nucleocytoplasmic transport;0.00115654998012918!GO:0008624;induction of apoptosis by extracellular signals;0.00121832952049153!GO:0031497;chromatin assembly;0.00134763722420024!GO:0042113;B cell activation;0.00135571536783198!GO:0008654;phospholipid biosynthetic process;0.00136802796268289!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00136802796268289!GO:0016779;nucleotidyltransferase activity;0.00142119538375953!GO:0022402;cell cycle process;0.00158081533517859!GO:0030041;actin filament polymerization;0.00160301143767236!GO:0006334;nucleosome assembly;0.00177322513910357!GO:0006099;tricarboxylic acid cycle;0.00182442526757169!GO:0046356;acetyl-CoA catabolic process;0.00182442526757169!GO:0007034;vacuolar transport;0.0019006180706855!GO:0019904;protein domain specific binding;0.00190786533730527!GO:0006818;hydrogen transport;0.00205091467831023!GO:0015992;proton transport;0.00210824892304007!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.00212151212526537!GO:0016363;nuclear matrix;0.00230793466318793!GO:0043281;regulation of caspase activity;0.00235189207013949!GO:0006612;protein targeting to membrane;0.00238675121640576!GO:0001726;ruffle;0.00240914139510741!GO:0007050;cell cycle arrest;0.0024279091107846!GO:0043087;regulation of GTPase activity;0.00247816253068208!GO:0006611;protein export from nucleus;0.0025706669941772!GO:0006897;endocytosis;0.00278911487534263!GO:0010324;membrane invagination;0.00278911487534263!GO:0030384;phosphoinositide metabolic process;0.00286602319773411!GO:0050865;regulation of cell activation;0.00286602319773411!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00297670817118168!GO:0004812;aminoacyl-tRNA ligase activity;0.00297670817118168!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00297670817118168!GO:0008154;actin polymerization and/or depolymerization;0.00311335470299778!GO:0022890;inorganic cation transmembrane transporter activity;0.00315116217438126!GO:0050870;positive regulation of T cell activation;0.00315992852049495!GO:0051249;regulation of lymphocyte activation;0.00318241233931933!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00329840794423277!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00330930131148799!GO:0004722;protein serine/threonine phosphatase activity;0.00331346405172737!GO:0008186;RNA-dependent ATPase activity;0.00333883565723074!GO:0031901;early endosome membrane;0.00337765795249044!GO:0006084;acetyl-CoA metabolic process;0.00339224859341408!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00339224859341408!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00351947519444541!GO:0002252;immune effector process;0.00365005389920152!GO:0043280;positive regulation of caspase activity;0.00367759271499174!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00372866396562104!GO:0003690;double-stranded DNA binding;0.00379966618993649!GO:0051223;regulation of protein transport;0.00383382616541824!GO:0003729;mRNA binding;0.00389036948442829!GO:0045449;regulation of transcription;0.00419113528574355!GO:0005741;mitochondrial outer membrane;0.0043826525152792!GO:0030029;actin filament-based process;0.004434485015693!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00456140516350637!GO:0008637;apoptotic mitochondrial changes;0.00461288335260447!GO:0006399;tRNA metabolic process;0.00488081775799809!GO:0051187;cofactor catabolic process;0.00490712113626395!GO:0043623;cellular protein complex assembly;0.0049093291725991!GO:0048250;mitochondrial iron ion transport;0.00493920034133142!GO:0005813;centrosome;0.00495293217746257!GO:0045892;negative regulation of transcription, DNA-dependent;0.00498578164272892!GO:0043038;amino acid activation;0.00500743329490306!GO:0006418;tRNA aminoacylation for protein translation;0.00500743329490306!GO:0043039;tRNA aminoacylation;0.00500743329490306!GO:0016072;rRNA metabolic process;0.00506198270275581!GO:0009719;response to endogenous stimulus;0.00513604983919744!GO:0002443;leukocyte mediated immunity;0.00518108608320146!GO:0006643;membrane lipid metabolic process;0.00519106061731641!GO:0051092;activation of NF-kappaB transcription factor;0.00525764426485564!GO:0050811;GABA receptor binding;0.00530793854679922!GO:0030867;rough endoplasmic reticulum membrane;0.0054344264090214!GO:0016505;apoptotic protease activator activity;0.0054344264090214!GO:0001819;positive regulation of cytokine production;0.0056130687650407!GO:0002521;leukocyte differentiation;0.00561966243892044!GO:0001817;regulation of cytokine production;0.00563094963805087!GO:0007041;lysosomal transport;0.00581643795492713!GO:0050871;positive regulation of B cell activation;0.00596493508995687!GO:0006891;intra-Golgi vesicle-mediated transport;0.00596493508995687!GO:0051707;response to other organism;0.00602362872941758!GO:0002274;myeloid leukocyte activation;0.00609349519743677!GO:0030118;clathrin coat;0.00622341922649604!GO:0006364;rRNA processing;0.00633379039146239!GO:0008234;cysteine-type peptidase activity;0.00657558731512562!GO:0030658;transport vesicle membrane;0.00663664602870842!GO:0048471;perinuclear region of cytoplasm;0.00664186227950139!GO:0045576;mast cell activation;0.00707609689950023!GO:0043021;ribonucleoprotein binding;0.0071337171027293!GO:0005637;nuclear inner membrane;0.00715580561905702!GO:0000287;magnesium ion binding;0.00727141935376662!GO:0030518;steroid hormone receptor signaling pathway;0.0072753194283926!GO:0033116;ER-Golgi intermediate compartment membrane;0.00768514236574946!GO:0009109;coenzyme catabolic process;0.0079444037268275!GO:0007005;mitochondrion organization and biogenesis;0.0079805159224321!GO:0032774;RNA biosynthetic process;0.00804755430394959!GO:0051252;regulation of RNA metabolic process;0.00811557197299589!GO:0051049;regulation of transport;0.00811557197299589!GO:0006351;transcription, DNA-dependent;0.00813217028221729!GO:0042802;identical protein binding;0.00825873056203648!GO:0046456;icosanoid biosynthetic process;0.00825873056203648!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00841153704794191!GO:0004004;ATP-dependent RNA helicase activity;0.00841153704794191!GO:0005099;Ras GTPase activator activity;0.0084712826794367!GO:0006968;cellular defense response;0.00858613100929861!GO:0051090;regulation of transcription factor activity;0.0086302412745402!GO:0043299;leukocyte degranulation;0.00866344332075868!GO:0042287;MHC protein binding;0.00894996002586192!GO:0022415;viral reproductive process;0.0090081595978399!GO:0045454;cell redox homeostasis;0.0092433724454401!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00951739322596169!GO:0031072;heat shock protein binding;0.00952085238346964!GO:0008287;protein serine/threonine phosphatase complex;0.0101588350993221!GO:0005667;transcription factor complex;0.0101727806386848!GO:0016791;phosphoric monoester hydrolase activity;0.0105477582472871!GO:0033157;regulation of intracellular protein transport;0.0105964224178571!GO:0042306;regulation of protein import into nucleus;0.0105964224178571!GO:0019867;outer membrane;0.010896823955135!GO:0030674;protein binding, bridging;0.0110064306118102!GO:0043300;regulation of leukocyte degranulation;0.0111498015721142!GO:0043506;regulation of JNK activity;0.0112406174342502!GO:0008656;caspase activator activity;0.0117532995870237!GO:0051338;regulation of transferase activity;0.0117907412750737!GO:0031968;organelle outer membrane;0.0119273944517716!GO:0005815;microtubule organizing center;0.0120225597028652!GO:0044262;cellular carbohydrate metabolic process;0.0120812591257751!GO:0051920;peroxiredoxin activity;0.0122025495670207!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0123332342067058!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0123332342067058!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0123332342067058!GO:0032318;regulation of Ras GTPase activity;0.0125666593893387!GO:0051050;positive regulation of transport;0.0127132827722191!GO:0050863;regulation of T cell activation;0.0128626647408036!GO:0019883;antigen processing and presentation of endogenous antigen;0.0129147318064493!GO:0030133;transport vesicle;0.0135293509184363!GO:0043028;caspase regulator activity;0.013686936129454!GO:0006914;autophagy;0.0140150455396155!GO:0051345;positive regulation of hydrolase activity;0.0142472562369996!GO:0008286;insulin receptor signaling pathway;0.0144331546552381!GO:0003725;double-stranded RNA binding;0.0148916615950737!GO:0005791;rough endoplasmic reticulum;0.0149094377019379!GO:0043085;positive regulation of catalytic activity;0.0149183170808466!GO:0043488;regulation of mRNA stability;0.0152124291500775!GO:0043487;regulation of RNA stability;0.0152124291500775!GO:0047485;protein N-terminus binding;0.0155336621419636!GO:0006595;polyamine metabolic process;0.0158801590163082!GO:0043549;regulation of kinase activity;0.0159076307839608!GO:0030660;Golgi-associated vesicle membrane;0.0159888736214622!GO:0004185;serine carboxypeptidase activity;0.0160389541272141!GO:0048487;beta-tubulin binding;0.0160580008092429!GO:0006672;ceramide metabolic process;0.0162152532776588!GO:0019955;cytokine binding;0.0164141353220977!GO:0030258;lipid modification;0.0164227362619446!GO:0016584;nucleosome positioning;0.016720152249843!GO:0045058;T cell selection;0.0169170562147715!GO:0042168;heme metabolic process;0.0170722207635577!GO:0048002;antigen processing and presentation of peptide antigen;0.0171107223863067!GO:0030521;androgen receptor signaling pathway;0.0175482615502339!GO:0019865;immunoglobulin binding;0.0176334845108996!GO:0046966;thyroid hormone receptor binding;0.0183859678114428!GO:0000118;histone deacetylase complex;0.0184698562690564!GO:0005521;lamin binding;0.0186678117170731!GO:0048821;erythrocyte development;0.018732385337338!GO:0006644;phospholipid metabolic process;0.0189370722843251!GO:0046474;glycerophospholipid biosynthetic process;0.0190058056342!GO:0001836;release of cytochrome c from mitochondria;0.0192244571761063!GO:0045653;negative regulation of megakaryocyte differentiation;0.0196511500211261!GO:0030119;AP-type membrane coat adaptor complex;0.0198495630514104!GO:0045309;protein phosphorylated amino acid binding;0.0198855143592732!GO:0042613;MHC class II protein complex;0.0199025043999719!GO:0006213;pyrimidine nucleoside metabolic process;0.0200901107307324!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0202328025821307!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0204747363911115!GO:0002819;regulation of adaptive immune response;0.0204747363911115!GO:0046578;regulation of Ras protein signal transduction;0.0206210790962258!GO:0031625;ubiquitin protein ligase binding;0.0208507886082245!GO:0051091;positive regulation of transcription factor activity;0.0208548340144333!GO:0006607;NLS-bearing substrate import into nucleus;0.0208548340144333!GO:0002444;myeloid leukocyte mediated immunity;0.0212608838388819!GO:0046519;sphingoid metabolic process;0.0214038898995991!GO:0030100;regulation of endocytosis;0.0214915728620681!GO:0006778;porphyrin metabolic process;0.0214915728620681!GO:0033013;tetrapyrrole metabolic process;0.0214915728620681!GO:0046467;membrane lipid biosynthetic process;0.0216531518343965!GO:0002448;mast cell mediated immunity;0.0217089332406212!GO:0043303;mast cell degranulation;0.0217089332406212!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0217187404522213!GO:0046983;protein dimerization activity;0.0221206820058175!GO:0050853;B cell receptor signaling pathway;0.0224888919982555!GO:0001516;prostaglandin biosynthetic process;0.0225736386949984!GO:0046457;prostanoid biosynthetic process;0.0225736386949984!GO:0051098;regulation of binding;0.0229272505700713!GO:0004672;protein kinase activity;0.0231150807893131!GO:0002440;production of molecular mediator of immune response;0.0237277614970447!GO:0045859;regulation of protein kinase activity;0.0238244826266878!GO:0009893;positive regulation of metabolic process;0.0239570477313871!GO:0002682;regulation of immune system process;0.0240004724264699!GO:0030522;intracellular receptor-mediated signaling pathway;0.0241204987948355!GO:0015923;mannosidase activity;0.0243419083276457!GO:0030131;clathrin adaptor complex;0.0243998211088071!GO:0050857;positive regulation of antigen receptor-mediated signaling pathway;0.0245846030623493!GO:0042990;regulation of transcription factor import into nucleus;0.0247151096087458!GO:0042991;transcription factor import into nucleus;0.0247151096087458!GO:0006783;heme biosynthetic process;0.0247544678360955!GO:0048500;signal recognition particle;0.0248457695240711!GO:0006740;NADPH regeneration;0.0248457695240711!GO:0006098;pentose-phosphate shunt;0.0248457695240711!GO:0045646;regulation of erythrocyte differentiation;0.025086430621623!GO:0007259;JAK-STAT cascade;0.0251861669450228!GO:0031294;lymphocyte costimulation;0.0253432292369209!GO:0031295;T cell costimulation;0.0253432292369209!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0253432292369209!GO:0006007;glucose catabolic process;0.0255789871432621!GO:0045113;regulation of integrin biosynthetic process;0.0255953784852279!GO:0045112;integrin biosynthetic process;0.0255953784852279!GO:0045637;regulation of myeloid cell differentiation;0.0260498063340691!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0262018043279511!GO:0006376;mRNA splice site selection;0.0264215660444626!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0264215660444626!GO:0008333;endosome to lysosome transport;0.0265438486963874!GO:0008629;induction of apoptosis by intracellular signals;0.0265950345029156!GO:0016251;general RNA polymerase II transcription factor activity;0.0271286504713013!GO:0015631;tubulin binding;0.0271607524607071!GO:0002218;activation of innate immune response;0.0271607524607071!GO:0002758;innate immune response-activating signal transduction;0.0271607524607071!GO:0004177;aminopeptidase activity;0.0275822534769725!GO:0050727;regulation of inflammatory response;0.0275865765731198!GO:0031347;regulation of defense response;0.0275865765731198!GO:0046979;TAP2 binding;0.0276161428140714!GO:0046977;TAP binding;0.0276161428140714!GO:0046978;TAP1 binding;0.0276161428140714!GO:0007040;lysosome organization and biogenesis;0.0276676475490348!GO:0045121;lipid raft;0.0277587257096472!GO:0030176;integral to endoplasmic reticulum membrane;0.0278434467015977!GO:0051881;regulation of mitochondrial membrane potential;0.0278434467015977!GO:0043304;regulation of mast cell degranulation;0.0281485951619755!GO:0043235;receptor complex;0.0285467985934092!GO:0006355;regulation of transcription, DNA-dependent;0.0286019448795874!GO:0030132;clathrin coat of coated pit;0.0289070295160599!GO:0035258;steroid hormone receptor binding;0.0291471883807199!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.029316141796885!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.029316141796885!GO:0051056;regulation of small GTPase mediated signal transduction;0.0295316454638762!GO:0002253;activation of immune response;0.0295573021954587!GO:0002467;germinal center formation;0.0299760413428507!GO:0006260;DNA replication;0.0300410316286057!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0300649729656668!GO:0046489;phosphoinositide biosynthetic process;0.0302165280098516!GO:0019863;IgE binding;0.0302165280098516!GO:0032763;regulation of mast cell cytokine production;0.0303998291120276!GO:0032762;mast cell cytokine production;0.0303998291120276!GO:0000209;protein polyubiquitination;0.030538005120043!GO:0006414;translational elongation;0.0305382118490415!GO:0019318;hexose metabolic process;0.0308729194001451!GO:0002449;lymphocyte mediated immunity;0.0315186366599427!GO:0030027;lamellipodium;0.0321543340260415!GO:0000278;mitotic cell cycle;0.0327744330688529!GO:0031098;stress-activated protein kinase signaling pathway;0.0328643225969871!GO:0005484;SNAP receptor activity;0.0330571971908273!GO:0006779;porphyrin biosynthetic process;0.0331108981120004!GO:0033014;tetrapyrrole biosynthetic process;0.0331108981120004!GO:0015630;microtubule cytoskeleton;0.0332076021628154!GO:0006338;chromatin remodeling;0.0335901336585364!GO:0006383;transcription from RNA polymerase III promoter;0.0338349653413!GO:0019864;IgG binding;0.0338349653413!GO:0006352;transcription initiation;0.0339742772864035!GO:0019901;protein kinase binding;0.0343653643198412!GO:0000303;response to superoxide;0.0346264826796559!GO:0007266;Rho protein signal transduction;0.0346989812793792!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0347021932815991!GO:0009165;nucleotide biosynthetic process;0.0347118156752935!GO:0002237;response to molecule of bacterial origin;0.0347118156752935!GO:0001784;phosphotyrosine binding;0.0351311654172389!GO:0046824;positive regulation of nucleocytoplasmic transport;0.0355436040675227!GO:0051789;response to protein stimulus;0.0362232667228174!GO:0006986;response to unfolded protein;0.0362232667228174!GO:0030125;clathrin vesicle coat;0.0363917084922325!GO:0030665;clathrin coated vesicle membrane;0.0363917084922325!GO:0016311;dephosphorylation;0.0363917084922325!GO:0030098;lymphocyte differentiation;0.0369969816351843!GO:0000786;nucleosome;0.037611890031524!GO:0043621;protein self-association;0.0378299481922974!GO:0003899;DNA-directed RNA polymerase activity;0.0381164911539984!GO:0004718;Janus kinase activity;0.0381359380374705!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0381418876281365!GO:0017166;vinculin binding;0.0382992083832955!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0390328437102217!GO:0045047;protein targeting to ER;0.0390328437102217!GO:0005996;monosaccharide metabolic process;0.039209668611239!GO:0008625;induction of apoptosis via death domain receptors;0.0394218551939002!GO:0032760;positive regulation of tumor necrosis factor production;0.039751514140089!GO:0043405;regulation of MAP kinase activity;0.0399860155880781!GO:0009897;external side of plasma membrane;0.0399860155880781!GO:0000059;protein import into nucleus, docking;0.039992858418529!GO:0003746;translation elongation factor activity;0.0406468673666095!GO:0030663;COPI coated vesicle membrane;0.0412148412119715!GO:0030126;COPI vesicle coat;0.0412148412119715!GO:0007006;mitochondrial membrane organization and biogenesis;0.0412148412119715!GO:0005938;cell cortex;0.0413730680019782!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0420050387838111!GO:0050776;regulation of immune response;0.0423838853955461!GO:0032640;tumor necrosis factor production;0.0429339489158953!GO:0030137;COPI-coated vesicle;0.042990652505778!GO:0033367;protein localization in mast cell secretory granule;0.0434444542133718!GO:0033365;protein localization in organelle;0.0434444542133718!GO:0033371;T cell secretory granule organization and biogenesis;0.0434444542133718!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0434444542133718!GO:0033375;protease localization in T cell secretory granule;0.0434444542133718!GO:0042629;mast cell granule;0.0434444542133718!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0434444542133718!GO:0033364;mast cell secretory granule organization and biogenesis;0.0434444542133718!GO:0033380;granzyme B localization in T cell secretory granule;0.0434444542133718!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0434444542133718!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0434444542133718!GO:0033368;protease localization in mast cell secretory granule;0.0434444542133718!GO:0033366;protein localization in secretory granule;0.0434444542133718!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0434444542133718!GO:0033374;protein localization in T cell secretory granule;0.0434444542133718!GO:0043507;positive regulation of JNK activity;0.0444379323850299!GO:0042288;MHC class I protein binding;0.044464472567927!GO:0048872;homeostasis of number of cells;0.0446588578725861!GO:0008383;manganese superoxide dismutase activity;0.0452894517970406!GO:0001315;age-dependent response to reactive oxygen species;0.0452894517970406!GO:0006405;RNA export from nucleus;0.0456521068407296!GO:0016504;protease activator activity;0.0462570190443002!GO:0002250;adaptive immune response;0.0462570190443002!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0462570190443002!GO:0045621;positive regulation of lymphocyte differentiation;0.0471971644803494!GO:0032386;regulation of intracellular transport;0.0478360096901517!GO:0050671;positive regulation of lymphocyte proliferation;0.0478360096901517!GO:0032946;positive regulation of mononuclear cell proliferation;0.0478360096901517!GO:0030833;regulation of actin filament polymerization;0.0480138330510495!GO:0000165;MAPKKK cascade;0.0480138330510495!GO:0040029;regulation of gene expression, epigenetic;0.0483426686706746!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0483426686706746!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0483426686706746!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0485491352071702!GO:0019220;regulation of phosphate metabolic process;0.0485633563325191!GO:0051174;regulation of phosphorus metabolic process;0.0485633563325191!GO:0008017;microtubule binding;0.0485633563325191!GO:0005669;transcription factor TFIID complex;0.0485633563325191!GO:0002684;positive regulation of immune system process;0.049250827596689!GO:0051087;chaperone binding;0.0492849550559828!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0493006779855698
|sample_id=12181
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12181-129A3;search_select_hide=table117:FF:12181-129A3
}}
}}

Latest revision as of 18:33, 4 June 2020

Name:Whole blood (ribopure), donor090309, donation3
Species:Human (Homo sapiens)
Library ID:CNhs11948,RDhi10002
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
RNA-Seq  SAMD00013674
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11948 CAGE DRX008531 DRR009403
RDhi10002 RNA-Seq DRX012355 DRR013803
Accession ID Hg19

Library idBAMCTSS
CNhs11948 DRZ000828 DRZ002213
RDhi10002 DRZ003004
Accession ID Hg38

Library idBAMCTSS
CNhs11948 DRZ012178 DRZ013563
RDhi10002
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.158
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.33
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.338
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.267
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen1.183
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.33
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.167
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.497
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.356
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.516
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.105
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.33
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.196
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.196
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.437
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.474
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.641
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.33
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.183
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory1.161
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.196
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.549
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.182
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.555
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.196
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.626
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.196
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.698
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.766
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.196
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0.196
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.196
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.931
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.196
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.433
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11948

Jaspar motifP-value
MA0002.21.38341e-9
MA0003.10.0755
MA0004.10.44
MA0006.10.455
MA0007.10.778
MA0009.10.0472
MA0014.10.723
MA0017.10.0875
MA0018.20.00646
MA0019.10.304
MA0024.10.00738
MA0025.10.393
MA0027.10.724
MA0028.10.757
MA0029.10.662
MA0030.10.108
MA0031.12.48723e-4
MA0035.28.82658e-5
MA0038.10.00299
MA0039.20.404
MA0040.10.542
MA0041.10.767
MA0042.10.732
MA0043.10.444
MA0046.10.282
MA0047.20.343
MA0048.10.222
MA0050.13.93205e-6
MA0051.10.0613
MA0052.10.00905
MA0055.10.0286
MA0057.10.907
MA0058.10.436
MA0059.10.458
MA0060.14.05596e-6
MA0061.10.0999
MA0062.20.0127
MA0065.20.141
MA0066.10.279
MA0067.10.521
MA0068.10.966
MA0069.10.551
MA0070.10.0135
MA0071.10.564
MA0072.10.53
MA0073.10.436
MA0074.10.804
MA0076.10.833
MA0077.10.286
MA0078.10.908
MA0079.20.813
MA0080.29.59064e-18
MA0081.10.00515
MA0083.10.638
MA0084.10.868
MA0087.10.748
MA0088.10.416
MA0090.10.011
MA0091.10.168
MA0092.10.846
MA0093.10.335
MA0099.20.107
MA0100.10.681
MA0101.10.987
MA0102.20.00468
MA0103.10.12
MA0104.20.276
MA0105.16.45333e-4
MA0106.10.484
MA0107.10.832
MA0108.21.02326e-6
MA0111.10.201
MA0112.20.00126
MA0113.10.487
MA0114.10.412
MA0115.10.774
MA0116.12.75115e-5
MA0117.10.675
MA0119.10.423
MA0122.10.953
MA0124.10.768
MA0125.10.0823
MA0131.10.538
MA0135.10.516
MA0136.11.40736e-20
MA0137.20.655
MA0138.20.352
MA0139.10.297
MA0140.11.83249e-12
MA0141.10.467
MA0142.10.898
MA0143.10.823
MA0144.10.256
MA0145.10.111
MA0146.10.00311
MA0147.10.264
MA0148.10.638
MA0149.10.419
MA0150.10.0683
MA0152.10.0282
MA0153.10.0331
MA0154.10.00629
MA0155.10.705
MA0156.11.97586e-12
MA0157.10.00331
MA0159.10.189
MA0160.10.653
MA0162.10.469
MA0163.11.70963e-5
MA0164.10.653
MA0258.10.0102
MA0259.10.198



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11948

Novel motifP-value
10.134
100.0499
1000.643
1010.181
1020.504
1030.339
1040.717
1050.349
1060.0131
1070.429
1080.993
1090.133
110.0808
1100.347
1110.255
1120.0919
1130.169
1140.0444
1150.634
1160.604
1170.0323
1180.269
1190.33
120.361
1200.415
1210.953
1220.577
1230.00978
1240.267
1250.203
1260.547
1270.276
1280.0155
1290.614
130.95
1300.426
1310.974
1320.655
1330.859
1340.911
1350.415
1360.98
1370.0112
1380.048
1390.00933
140.161
1400.211
1410.43
1420.742
1430.00313
1440.614
1450.166
1460.968
1470.131
1480.0927
1490.472
150.0776
1500.747
1510.195
1520.194
1530.515
1540.74
1550.253
1560.756
1570.268
1580.471
1590.187
160.363
1600.453
1610.226
1620.861
1630.472
1640.183
1650.109
1660.86
1670.846
1680.237
1690.0136
170.375
180.558
190.226
20.207
200.663
210.187
220.217
230.107
240.049
250.32
260.141
270.102
280.536
290.507
30.0644
300.863
310.545
320.966
330.75
340.247
350.2
360.51
370.153
380.362
390.943
40.79
400.471
410.257
420.247
430.146
440.207
450.523
460.0785
470.154
480.263
490.105
50.339
500.88
510.389
520.454
530.098
540.265
550.0867
560.301
570.628
580.0845
590.0533
60.751
600.0635
610.275
620.0213
630.527
640.313
650.184
660.347
670.179
680.552
690.178
70.284
700.063
710.114
720.248
730.231
740.986
750.0904
760.433
770.495
780.328
790.567
80.294
800.121
810.224
820.0152
830.481
840.195
850.165
860.127
870.556
880.712
890.546
90.282
900.0174
910.32
920.0559
930.478
940.201
950.322
960.068
970.671
980.0297
990.661



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11948


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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