FF:10841-111E4: Difference between revisions

Revision as of 20:04, 9 July 2012

Name:	small cell lung carcinoma cell line:DMS 144
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	male
age	68
cell type	unclassifiable
cell line	DMS 144
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.054
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.353
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00168
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0026
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0.838
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00225
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0915
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.304
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0471
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0927
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.31
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0469
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.203
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12808

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00314
MA0003.1	MA0003.1	0.189
MA0004.1	MA0004.1	0.206
MA0006.1	MA0006.1	0.229
MA0007.1	MA0007.1	0.856
MA0009.1	MA0009.1	0.841
MA0014.1	MA0014.1	0.748
MA0017.1	MA0017.1	0.00299
MA0018.2	MA0018.2	0.128
MA0019.1	MA0019.1	0.651
MA0024.1	MA0024.1	3.09751e-4
MA0025.1	MA0025.1	0.237
MA0027.1	MA0027.1	0.578
MA0028.1	MA0028.1	0.00968
MA0029.1	MA0029.1	0.463
MA0030.1	MA0030.1	0.192
MA0031.1	MA0031.1	0.162
MA0035.2	MA0035.2	0.602
MA0038.1	MA0038.1	0.00261
MA0039.2	MA0039.2	0.433
MA0040.1	MA0040.1	0.4
MA0041.1	MA0041.1	0.0943
MA0042.1	MA0042.1	0.0815
MA0043.1	MA0043.1	0.696
MA0046.1	MA0046.1	0.129
MA0047.2	MA0047.2	0.0982
MA0048.1	MA0048.1	0.175
MA0050.1	MA0050.1	3.14561e-12
MA0051.1	MA0051.1	6.66465e-7
MA0052.1	MA0052.1	0.0468
MA0055.1	MA0055.1	0.0101
MA0057.1	MA0057.1	0.0931
MA0058.1	MA0058.1	0.169
MA0059.1	MA0059.1	0.504
MA0060.1	MA0060.1	4.54166e-14
MA0061.1	MA0061.1	0.0227
MA0062.2	MA0062.2	0.00819
MA0065.2	MA0065.2	0.117
MA0066.1	MA0066.1	0.238
MA0067.1	MA0067.1	0.311
MA0068.1	MA0068.1	0.523
MA0069.1	MA0069.1	0.609
MA0070.1	MA0070.1	0.0193
MA0071.1	MA0071.1	0.915
MA0072.1	MA0072.1	0.953
MA0073.1	MA0073.1	0.43
MA0074.1	MA0074.1	0.247
MA0076.1	MA0076.1	1.39887e-4
MA0077.1	MA0077.1	0.48
MA0078.1	MA0078.1	0.483
MA0079.2	MA0079.2	0.254
MA0080.2	MA0080.2	3.52572e-13
MA0081.1	MA0081.1	0.0344
MA0083.1	MA0083.1	0.479
MA0084.1	MA0084.1	0.978
MA0087.1	MA0087.1	0.734
MA0088.1	MA0088.1	0.0273
MA0090.1	MA0090.1	0.257
MA0091.1	MA0091.1	0.0432
MA0092.1	MA0092.1	0.261
MA0093.1	MA0093.1	0.134
MA0099.2	MA0099.2	2.52898e-21
MA0100.1	MA0100.1	0.1
MA0101.1	MA0101.1	0.0608
MA0102.2	MA0102.2	4.88478e-5
MA0103.1	MA0103.1	0.459
MA0104.2	MA0104.2	0.073
MA0105.1	MA0105.1	0.0518
MA0106.1	MA0106.1	0.515
MA0107.1	MA0107.1	0.0162
MA0108.2	MA0108.2	0.34
MA0111.1	MA0111.1	0.862
MA0112.2	MA0112.2	0.00122
MA0113.1	MA0113.1	0.0234
MA0114.1	MA0114.1	0.12
MA0115.1	MA0115.1	0.904
MA0116.1	MA0116.1	0.0892
MA0117.1	MA0117.1	0.855
MA0119.1	MA0119.1	0.31
MA0122.1	MA0122.1	0.531
MA0124.1	MA0124.1	0.946
MA0125.1	MA0125.1	0.187
MA0131.1	MA0131.1	0.143
MA0135.1	MA0135.1	0.181
MA0136.1	MA0136.1	2.28982e-10
MA0137.2	MA0137.2	0.0308
MA0138.2	MA0138.2	0.476
MA0139.1	MA0139.1	0.159
MA0140.1	MA0140.1	0.964
MA0141.1	MA0141.1	0.279
MA0142.1	MA0142.1	0.973
MA0143.1	MA0143.1	0.75
MA0144.1	MA0144.1	5.80317e-4
MA0145.1	MA0145.1	0.109
MA0146.1	MA0146.1	0.379
MA0147.1	MA0147.1	0.082
MA0148.1	MA0148.1	0.068
MA0149.1	MA0149.1	0.909
MA0150.1	MA0150.1	3.39755e-5
MA0152.1	MA0152.1	0.787
MA0153.1	MA0153.1	0.0978
MA0154.1	MA0154.1	0.0256
MA0155.1	MA0155.1	0.296
MA0156.1	MA0156.1	0.00131
MA0157.1	MA0157.1	0.397
MA0159.1	MA0159.1	0.0552
MA0160.1	MA0160.1	0.278
MA0162.1	MA0162.1	0.224
MA0163.1	MA0163.1	0.0861
MA0164.1	MA0164.1	0.666
MA0258.1	MA0258.1	0.0172
MA0259.1	MA0259.1	0.0472

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12808

Novel motif	Logo	P-value
1	1	0.827
10	10	0.888
100	100	0.322
101	101	0.848
102	102	0.472
103	103	0.231
104	104	0.577
105	105	0.279
106	106	6.70058e-7
107	107	0.00169
108	108	0.57
109	109	0.57
11	11	0.481
110	110	0.797
111	111	0.784
112	112	0.0396
113	113	0.468
114	114	0.364
115	115	0.685
116	116	0.856
117	117	0.941
118	118	0.994
119	119	0.363
12	12	0.728
120	120	0.554
121	121	0.23
122	122	0.641
123	123	0.635
124	124	0.629
125	125	0.00667
126	126	0.137
127	127	0.65
128	128	0.00205
129	129	0.3
13	13	0.929
130	130	0.514
131	131	0.0185
132	132	0.248
133	133	0.14
134	134	0.953
135	135	0.0152
136	136	0.457
137	137	0.182
138	138	0.209
139	139	0.0465
14	14	0.55
140	140	0.903
141	141	0.571
142	142	0.506
143	143	0.21
144	144	0.688
145	145	0.549
146	146	0.265
147	147	0.553
148	148	0.0157
149	149	0.109
15	15	0.559
150	150	0.256
151	151	0.258
152	152	0.0118
153	153	0.237
154	154	0.672
155	155	0.532
156	156	0.976
157	157	0.959
158	158	0.535
159	159	0.265
16	16	0.308
160	160	0.442
161	161	0.792
162	162	0.318
163	163	0.31
164	164	0.909
165	165	0.231
166	166	0.262
167	167	0.176
168	168	0.0996
169	169	0.0335
17	17	0.155
18	18	0.338
19	19	0.157
2	2	0.0485
20	20	0.417
21	21	0.575
22	22	0.229
23	23	1.25933e-4
24	24	0.918
25	25	0.689
26	26	0.321
27	27	0.161
28	28	0.756
29	29	0.377
3	3	0.462
30	30	0.188
31	31	0.722
32	32	0.0481
33	33	0.969
34	34	0.278
35	35	0.942
36	36	0.583
37	37	0.331
38	38	0.323
39	39	0.195
4	4	0.285
40	40	0.747
41	41	0.129
42	42	0.82
43	43	0.335
44	44	0.661
45	45	0.179
46	46	0.337
47	47	0.802
48	48	0.644
49	49	0.504
5	5	0.219
50	50	0.598
51	51	0.82
52	52	0.0127
53	53	0.319
54	54	0.359
55	55	0.814
56	56	0.47
57	57	0.911
58	58	0.256
59	59	0.0393
6	6	0.669
60	60	0.0026
61	61	0.925
62	62	0.136
63	63	0.317
64	64	0.753
65	65	0.0419
66	66	0.0363
67	67	0.426
68	68	0.098
69	69	0.768
7	7	0.72
70	70	0.207
71	71	0.206
72	72	0.218
73	73	0.0938
74	74	0.528
75	75	0.702
76	76	0.629
77	77	0.114
78	78	0.221
79	79	0.135
8	8	0.79
80	80	0.014
81	81	0.696
82	82	0.404
83	83	0.386
84	84	0.956
85	85	0.00824
86	86	0.534
87	87	0.948
88	88	0.956
89	89	0.0314
9	9	0.116
90	90	0.805
91	91	0.0783
92	92	0.208
93	93	0.935
94	94	0.18
95	95	0.405
96	96	0.459
97	97	0.898
98	98	0.687
99	99	0.72

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12808

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100189 small cell lung cancer cell sample
FF:0102206 small cell lung cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
5409 (lung small cell carcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102206 (small cell lung cancer cell line sample)
0100189 (small cell lung cancer cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr11:31832862..31832884,-!p2@PAX6!2.15!140.33!PAX6;;chr20:56100179..56100208,-!p1@CTCFL!2.09!123.32!CTCFL;;chr11:31832807..31832823,-!p4@PAX6!1.86!71.71!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.76!57.20!PAX6;;chr11:31832658..31832681,-!p1@PAX6!1.75!55.77!PAX6;;chr12:85673868..85673881,+!p2@ALX1!1.73!53.16!ALX1;;chr5:50679228..50679288,+!p1@ISL1!1.64!42.81!ISL1;;chr11:31832687..31832704,-!p6@PAX6!1.59!37.58!PAX6;;chr11:31832610..31832639,-!p5@PAX6!1.50!30.44!PAX6;;chr11:31832581..31832601,-!p7@PAX6!1.48!29.14!PAX6;;chr2:73520667..73520683,-!p1@EGR4!1.42!25.45!EGR4;;chr15:57511609..57511651,+!p2@TCF12!1.37!36.87!TCF12;;chr15:96874244..96874259,+!p5@NR2F2!1.35!50.42!NR2F2;;chr15:96874145..96874166,+!p7@NR2F2!1.34!39.48!NR2F2;;chr8:60031682..60031710,-!p2@TOX!1.34!33.42!TOX;;chr15:96874216..96874236,+!p13@NR2F2!1.32!30.32!NR2F2;;chr8:60031762..60031803,-!p3@TOX!1.30!27.47!TOX;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.30!19.15!PEG3;;chrX:84498989..84499003,+!p1@ZNF711!1.29!24.97!ZNF711;;chr15:96873984..96873999,+!p3@NR2F2!1.28!130.46!NR2F2;;chr6:122720681..122720713,+!p3@HSF2!1.27!21.64!HSF2;;chr19:22817119..22817145,+!p1@ZNF492!1.26!28.30!ZNF492;;chr20:50721803..50721857,-!p2@ZFP64!1.26!26.88!ZFP64;;chr6:10415484..10415508,-!p3@TFAP2A!1.26!17.12!TFAP2A;;chr5:92918919..92918942,+!p1@NR2F1!1.25!74.33!NR2F1;;chr2:45168834..45168847,+!p2@SIX3!1.25!16.89!SIX3;;chr19:22605136..22605154,-!p1@ZNF98!1.23!15.82!ZNF98;;chr6:10415276..10415341,-!p2@TFAP2A!1.22!18.91!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.20!24.85!TFAP2A;;chr2:45168875..45168916,+!p1@SIX3!1.20!14.75!SIX3;;chr1:47881953..47881958,+!p1@FOXE3!1.20!14.75!FOXE3;;chr19:45971246..45971265,+!p1@FOSB!1.19!265.43!FOSB;;chr5:92919100..92919135,+!p3@NR2F1!1.19!17.72!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!1.18!124.87!NR2F2;;chr8:60031809..60031835,-!p4@TOX!1.18!17.84!TOX;;chr7:27183291..27183324,-!p1@HOXA5!1.17!13.79!HOXA5;;chr6:19837592..19837621,+!p1@ID4!1.16!82.53!ID4;;chr5:137804484..137804498,+!p2@EGR1!1.16!53.51!EGR1;;chr17:59477233..59477263,+!p1@TBX2!1.15!40.91!TBX2;;chr5:137801160..137801176,+!p1@EGR1!1.14!1249.73!EGR1;;chr5:92919375..92919438,+!p6@NR2F1!1.14!14.03!NR2F1;;chr7:27183263..27183284,-!p2@HOXA5!1.14!12.72!HOXA5;;chr6:10412392..10412409,-!p4@TFAP2A!1.13!14.15!TFAP2A;;chrX:101186981..101187030,-!p1@ZMAT1!1.12!39.84!ZMAT1;;chr7:27205136..27205164,-!p1@HOXA9!1.12!12.13!HOXA9;;chr11:31832549..31832562,-!p10@PAX6!1.11!12.01!PAX6;;chr11:31833736..31833778,-!p13@PAX6!1.11!12.01!PAX6;;chr22:19748231..19748317,+!p1@TBX1!1.11!12.01!TBX1;;chr12:85673977..85674015,+!p1@ALX1!1.11!11.89!ALX1;;chr2:200323414..200323455,-!p1@SATB2!1.09!24.26!SATB2;;chr11:31832207..31832226,-!p12@PAX6!1.09!11.30!PAX6;;chr7:63505799..63505904,+!p1@ZNF727!1.08!10.94!ZNF727;;chr15:37392724..37392757,-!p1@MEIS2!1.07!49.83!MEIS2;;chr7:27196267..27196311,-!p1@HOXA7!1.05!10.35!HOXA7;;chr4:174451370..174451387,-!p1@HAND2!1.05!10.23!HAND2;;chr19:57352109..57352153,-!p2@ZIM2!1.04!9.99!ZIM2;;chr17:46806067..46806097,-!p1@HOXB13!1.04!9.87!HOXB13;;chr4:299227..299272,-!p1@ZNF732!1.02!9.51!ZNF732;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.51!IRX2;;chr2:45169143..45169167,+!p5@SIX3!1.02!9.39!SIX3;;chr7:27192185..27192209,-!p1@HOXA3!0.99!8.68!HOXA3;;chr13:72441074..72441172,-!p2@DACH1!0.97!8.32!DACH1;;chr7:27135591..27135658,-!p1@HOXA1!0.96!16.05!HOXA1;;chr5:92918956..92918969,+!p4@NR2F1!0.96!8.92!NR2F1;;chr14:75745523..75745537,+!p1@FOS!0.95!978.36!FOS;;chr13:72441315..72441454,-!p1@DACH1!0.95!16.17!DACH1;;chr15:96876966..96877017,+!p12@NR2F2!0.95!11.54!NR2F2;;chr11:31832539..31832548,-!p16@PAX6!0.95!7.97!PAX6;;chr12:85674018..85674039,+!p3@ALX1!0.95!7.97!ALX1;;chr9:96717629..96717644,-!p1@BARX1!0.95!7.97!BARX1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.95!7.97!ZSCAN1;;chr15:96874063..96874074,+!p10@NR2F2!0.94!14.39!NR2F2;;chr3:21792682..21792720,-!p1@ZNF385D!0.94!7.73!ZNF385D;;chr15:96873921..96873946,+!p1@NR2F2!0.93!220.36!NR2F2;;chr11:31832461..31832468,-!p20@PAX6!0.93!7.49!PAX6;;chr4:8873545..8873583,-!p1@HMX1!0.93!7.49!HMX1;;chr2:71127699..71127744,+!p1@VAX2!0.92!15.58!VAX2;;chr8:60031934..60031986,-!p6@TOX!0.92!7.37!TOX;;chr7:27153454..27153469,-!p2@HOXA3!0.92!7.25!HOXA3;;chr17:46806098..46806118,-!p3@HOXB13!0.92!7.25!HOXB13;;chr4:4861385..4861398,+!p1@MSX1!0.91!21.76!MSX1;;chr5:150284532..150284549,-!p1@ZNF300!0.91!15.34!ZNF300;;chr2:200322259..200322280,-!p5@SATB2!0.90!6.90!SATB2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.89!6.78!HOXC5;;chr12:66218183..66218209,+!p4@HMGA2!0.88!13.20!HMGA2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.88!6.66!ZSCAN1;;chr1:197886461..197886558,+!p1@LHX9!0.88!6.66!LHX9;;chr20:50722573..50722580,-!p18@ZFP64!0.88!6.66!ZFP64;;chr20:50418947..50418964,-!p4@SALL4!0.88!6.54!SALL4;;chrX:101187036..101187056,-!p2@ZMAT1!0.87!7.14!ZMAT1;;chr20:50721883..50721896,-!p11@ZFP64!0.87!6.42!ZFP64;;chr6:122720718..122720731,+!p4@HSF2!0.87!6.42!HSF2;;chr12:66218152..66218174,+!p10@HMGA2!0.86!6.78!HMGA2;;chr8:60031840..60031869,-!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;;chr9:100615499..100615519,+!p1@FOXE1!0.26!0.83!FOXE1;;chr22:22874610..22874616,-!p1@ZNF280A!0.26!0.83!ZNF280A;;chr2:10091783..10091811,+!p2@GRHL1!0.26!0.83!GRHL1;;chr2:200322723..200322739,-!p6@SATB2!0.26!0.83!SATB2;;chr2:45169024..45169033,+!p12@SIX3!0.26!0.83!SIX3;;chr2:45169684..45169715,+!p9@SIX3!0.26!0.83!SIX3;;chr3:147111505..147111529,+!p6@ZIC1!0.26!0.83!ZIC1;;chr3:25469815..25469866,+!p3@RARB!0.26!0.83!RARB;;chr17:46690839..46690884,-!p1@HOXB8!0.26!0.83!HOXB8;;chr19:11750543..11750565,+!p2@ZNF833P!0.26!0.83!ZNF833P;;chr9:16727880..16727894,-!p10@BNC2!0.26!0.83!BNC2;;chr10:111967331..111967336,+!p10@MXI1!0.26!0.83!MXI1;;chr10:135043674..135043682,+!p9@UTF1!0.26!0.83!UTF1;;chr10:135043690..135043701,+!p4@UTF1!0.26!0.83!UTF1;;chr10:135122906..135122921,+!p4@ZNF511!0.26!0.83!ZNF511;;chr11:31825194..31825209,-!p17@PAX6!0.26!0.83!PAX6;;chr11:71955210..71955227,-!p1@PHOX2A!0.26!0.83!PHOX2A;;chr11:8040739..8040815,+!p4@TUB!0.26!0.83!TUB;;chr12:2968536..2968539,-!p3@FOXM1!0.26!0.83!FOXM1;;chr12:57504069..57504090,-!p7@STAT6!0.26!0.83!STAT6;;chr13:72440434..72440479,-!p6@DACH1!0.26!0.83!DACH1;;chr19:49140658..49140667,-!p8@DBP!0.26!0.83!DBP;;chr19:49140692..49140709,-!p5@DBP!0.26!0.83!DBP;;chr19:18392422..18392440,-!p1@JUND!0.25!224.40!JUND;;chr2:27805880..27805967,+!p1@ZNF512!0.25!22.12!ZNF512;;chr19:53400852..53400962,-!p1@ZNF320!0.25!15.58!ZNF320;;chr20:62601243..62601291,-!p1@ZNF512B!0.25!15.46!ZNF512B;;chr16:2273558..2273637,+!p1@E4F1!0.25!14.75!E4F1;;chrX:128657413..128657456,-!p2@SMARCA1!0.25!13.44!SMARCA1;;chr1:155532531..155532605,-!p1@ASH1L!0.25!10.23!ASH1L;;chr16:3285144..3285191,-!p1@ZNF200!0.25!7.14!ZNF200;;chr9:125667618..125667678,-!p2@RC3H2!0.25!6.54!RC3H2;;chr19:15543565..15543579,-!p2@WIZ!0.25!6.42!WIZ;;chr21:47063625..47063658,+!p1@PCBP3!0.25!6.30!PCBP3;;chr19:53696587..53696633,-!p1@ZNF665!0.25!5.23!ZNF665;;chr1:27022839..27022890,+!p3@ARID1A!0.25!3.92!ARID1A;;chr19:37862054..37862110,+!p1@ZNF527!0.25!3.69!ZNF527;;chr16:71518504..71518542,-!p1@ZNF19!0.25!3.21!ZNF19;;chr6:56954830..56954845,+!p3@ZNF451!0.25!2.74!ZNF451;;chr12:133706820..133706881,-!p1@ZNF891!0.25!2.62!ZNF891;;chr11:85376097..85376108,-!p2@CREBZF!0.25!2.26!CREBZF;;chr19:58666441..58666478,-!p2@ZNF329!0.25!2.02!ZNF329;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.25!1.90!ELK4;;chr12:56575310..56575344,-!p3@SMARCC2!0.25!1.78!SMARCC2;;chr19:37019569..37019593,-!p2@ZNF260!0.25!1.78!ZNF260;;chr5:134369905..134369972,-!p1@PITX1!0.25!1.66!PITX1;;chr5:178322893..178322931,+!p1@ZFP2!0.25!1.55!ZFP2;;chr7:106809470..106809481,+!p2@HBP1!0.25!1.43!HBP1;;chr15:80696703..80696754,+!p1@ARNT2!0.25!1.31!ARNT2;;chr8:103666182..103666197,-!p4@KLF10!0.25!1.07!KLF10;;chr1:8938766..8938774,-!p2@ENO1!0.24!108.57!ENO1;;chr10:60145155..60145206,+!p1@TFAM!0.24!68.02!TFAM;;chr19:16435625..16435682,+!p1@KLF2!0.24!50.18!KLF2;;chr15:57210818..57210930,+!p1@TCF12!0.24!27.83!TCF12;;chr1:150849047..150849082,-!p1@ARNT!0.24!24.02!ARNT;;chr19:58331088..58331106,+!p1@ZNF587!0.24!21.88!ZNF587;;chr17:3571887..3571918,-!p2@TAX1BP3!0.24!17.01!TAX1BP3;;chr12:498415..498492,-!p1@KDM5A!0.24!16.89!KDM5A;;chr6:32095968..32096032,-!p1@ATF6B!0.24!13.08!ATF6B;;chr19:37064145..37064216,-!p1@ZNF529!0.24!12.72!ZNF529;;chr11:76092097..76092183,-!p1@PRKRIR!0.24!12.01!PRKRIR;;chr19:52490043..52490113,-!p1@ZNF350!0.24!11.65!ZNF350;;chr19:50529247..50529296,+!p1@ZNF473!0.24!9.39!ZNF473;;chr16:71496112..71496160,-!p1@ZNF23!0.24!6.54!ZNF23;;chr19:40596828..40596855,-!p1@ZNF780A!0.24!5.95!ZNF780A;;chr2:174830084..174830108,-!p4@SP3!0.24!5.35!SP3;;chr19:58071201..58071238,-!p1@ZNF550!0.24!4.76!ZNF550;;chr10:44101850..44101896,+!p1@ZNF485!0.24!4.16!ZNF485;;chr12:57919293..57919311,+!p3@MBD6!0.24!3.45!MBD6;;
+|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100353,FF:0101120
 |fonse_cell_line_closure=FF:0100353,FF:0101120

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FF:10841-111E4: Difference between revisions

From FANTOM5_SSTAR

Revision as of 20:04, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0