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MCL coexpression mm9:2282: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000065!1.02e-09!41;UBERON:0001004!4.43e-09!42;UBERON:0006562!5.67e-09!24;UBERON:0001557!5.67e-09!24;UBERON:0001042!5.67e-09!24;UBERON:0008814!5.67e-09!24;UBERON:0009145!5.67e-09!24;UBERON:0002370!7.41e-09!23;UBERON:0000974!7.41e-09!23;UBERON:0004807!7.41e-09!23;UBERON:0005058!7.41e-09!23;UBERON:0003351!7.41e-09!23;UBERON:0009113!7.41e-09!23;UBERON:0003295!7.41e-09!23;UBERON:0009722!7.41e-09!23;UBERON:0005562!7.41e-09!23;UBERON:0007690!7.41e-09!23;UBERON:0001016!1.85e-08!75;UBERON:0001017!2.13e-08!73;UBERON:0004177!2.25e-08!29;UBERON:0005057!2.25e-08!29;UBERON:0003408!5.20e-08!24;UBERON:0002021!8.54e-08!10;UBERON:0000411!8.54e-08!10;UBERON:0001950!8.54e-08!10;UBERON:0000956!1.09e-07!21;UBERON:0001869!1.09e-07!21;UBERON:0000203!1.09e-07!21;UBERON:0002020!1.18e-07!34;UBERON:0002619!5.78e-07!17;UBERON:0004121!6.68e-07!95;UBERON:0000924!6.68e-07!95;UBERON:0006601!6.68e-07!95
}}
}}

Revision as of 18:13, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr1:13364202..13364263,-p3@Ncoa2
Mm9::chr4:119705371..119705471,+p@chr4:119705371..119705471
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Mm9::chr4:119705481..119705512,+p@chr4:119705481..119705512
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Mm9::chr4:119808753..119808782,+p@chr4:119808753..119808782
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
respiratory tract1.02e-0941
respiratory system4.43e-0942
pharynx5.67e-0924
upper respiratory tract5.67e-0924
chordate pharynx5.67e-0924
pharyngeal arch system5.67e-0924
pharyngeal region of foregut5.67e-0924
thymus7.41e-0923
neck7.41e-0923
respiratory system epithelium7.41e-0923
hemolymphoid system gland7.41e-0923
pharyngeal epithelium7.41e-0923
thymic region7.41e-0923
pharyngeal gland7.41e-0923
entire pharyngeal arch endoderm7.41e-0923
thymus primordium7.41e-0923
early pharyngeal endoderm7.41e-0923
nervous system1.85e-0875
central nervous system2.13e-0873
hemopoietic organ2.25e-0829
immune organ2.25e-0829
gland of gut5.20e-0824
occipital lobe8.54e-0810
visual cortex8.54e-0810
neocortex8.54e-0810
cerebral cortex1.09e-0721
cerebral hemisphere1.09e-0721
pallium1.09e-0721
gray matter1.18e-0734
regional part of cerebral cortex5.78e-0717
ectoderm-derived structure6.68e-0795
ectoderm6.68e-0795
presumptive ectoderm6.68e-0795


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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