Personal tools

MCL coexpression mm9:2553: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0.0572052190895671,0,0,0,0,0.0363974770700186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0978549673988937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.734332146532674,0,0,0.0530480122014902,0.0715236385554987,0.145309149361067,0.447612521917812,0.526731055891442,0.626435470362608,0.545903659758781,0.570812188875558,0.796763380819585,0.110130099743907,0.230771051730937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0.0572052190895671,0,0,0,0,0.0363974770700186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0978549673988937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.734332146532674,0,0,0.0530480122014902,0.0715236385554987,0.145309149361067,0.447612521917812,0.526731055891442,0.626435470362608,0.545903659758781,0.570812188875558,0.796763380819585,0.110130099743907,0.230771051730937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002370!8.80e-49!23;UBERON:0000974!8.80e-49!23;UBERON:0004807!8.80e-49!23;UBERON:0005058!8.80e-49!23;UBERON:0003351!8.80e-49!23;UBERON:0009113!8.80e-49!23;UBERON:0003295!8.80e-49!23;UBERON:0009722!8.80e-49!23;UBERON:0005562!8.80e-49!23;UBERON:0007690!8.80e-49!23;UBERON:0006562!1.07e-46!24;UBERON:0003408!1.07e-46!24;UBERON:0001557!1.07e-46!24;UBERON:0001042!1.07e-46!24;UBERON:0008814!1.07e-46!24;UBERON:0009145!1.07e-46!24;UBERON:0000072!2.33e-41!27;UBERON:0004177!2.05e-38!29;UBERON:0005057!2.05e-38!29;UBERON:0000077!1.36e-31!35;UBERON:0000063!1.36e-31!35;UBERON:0007811!1.12e-30!36;UBERON:0000065!9.24e-27!41;UBERON:0001004!4.34e-26!42;UBERON:0000153!1.90e-25!43;UBERON:0002390!2.98e-24!45;UBERON:0003061!2.98e-24!45;UBERON:0002193!1.21e-22!48;UBERON:0002405!1.21e-22!48;UBERON:0003929!1.43e-19!55;UBERON:0002368!8.23e-18!60;UBERON:0002530!2.55e-16!65;UBERON:0000490!4.75e-16!66;UBERON:0005911!2.78e-15!69;UBERON:0000949!1.40e-14!72;UBERON:0003081!1.02e-13!87;UBERON:0001041!5.86e-13!80;UBERON:0000064!3.78e-10!99;UBERON:0000926!1.78e-09!120;UBERON:0004120!1.78e-09!120;UBERON:0006603!1.78e-09!120;UBERON:0004921!1.39e-08!114;UBERON:0001007!2.09e-08!116;UBERON:0001555!2.09e-08!116;UBERON:0007026!2.09e-08!116;UBERON:0004119!3.12e-08!118;UBERON:0000925!3.12e-08!118;UBERON:0006595!3.12e-08!118;UBERON:0000475!3.23e-07!150;UBERON:0001048!4.93e-07!134
}}
}}

Revision as of 18:39, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:28527380..28527391,+p@chr10:28527380..28527391
+
Mm9::chr11:52084955..52084973,-p@chr11:52084955..52084973
-
Mm9::chr2:152814365..152814368,+p@chr2:152814365..152814368
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
thymus8.80e-4923
neck8.80e-4923
respiratory system epithelium8.80e-4923
hemolymphoid system gland8.80e-4923
pharyngeal epithelium8.80e-4923
thymic region8.80e-4923
pharyngeal gland8.80e-4923
entire pharyngeal arch endoderm8.80e-4923
thymus primordium8.80e-4923
early pharyngeal endoderm8.80e-4923
pharynx1.07e-4624
gland of gut1.07e-4624
upper respiratory tract1.07e-4624
chordate pharynx1.07e-4624
pharyngeal arch system1.07e-4624
pharyngeal region of foregut1.07e-4624
segment of respiratory tract2.33e-4127
hemopoietic organ2.05e-3829
immune organ2.05e-3829
mixed endoderm/mesoderm-derived structure1.36e-3135
organ segment1.36e-3135
craniocervical region1.12e-3036
respiratory tract9.24e-2741
respiratory system4.34e-2642
anterior region of body1.90e-2543
hematopoietic system2.98e-2445
blood island2.98e-2445
hemolymphoid system1.21e-2248
immune system1.21e-2248
gut epithelium1.43e-1955
endocrine gland8.23e-1860
gland2.55e-1665
unilaminar epithelium4.75e-1666
endo-epithelium2.78e-1569
endocrine system1.40e-1472
lateral plate mesoderm1.02e-1387
foregut5.86e-1380
organ part3.78e-1099
mesoderm1.78e-09120
mesoderm-derived structure1.78e-09120
presumptive mesoderm1.78e-09120
subdivision of digestive tract1.39e-08114
digestive system2.09e-08116
digestive tract2.09e-08116
primitive gut2.09e-08116
endoderm-derived structure3.12e-08118
endoderm3.12e-08118
presumptive endoderm3.12e-08118
organism subdivision3.23e-07150
primordium4.93e-07134


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:2553&oldid=2154792"