FFCP PHASE1:Mm9::chr1:34899822..34899829,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=214469|HGNC=|MCL_coexpression_id=22|UniProt=G3UWF0,E9Q917,Q80XQ8|association_with_transcript=65bp_to_ENSMUST00000167518,ENSMUST00000170092,NM_001160235,NM_001160236,NM_174997,uc007apj.2,uc011wje.1,uc011wjf.1_5end|description=CAGE_peak_3_at_Fam168b_5end|id=chr1:34899822..34899829,-|ontology_enrichment_celltype=CL:0002319!4.33e-16!43;CL:0000221!8.92e-16!44;CL:0000133!8.92e-16!44;CL:0000117!2.66e-15!23;CL:0000337!2.66e-15!23;CL:0000540!4.96e-15!33;CL:0000047!4.96e-15!33;CL:0000031!4.96e-15!33;CL:0000404!4.96e-15!33;CL:0000055!2.45e-14!50;CL:0000393!4.47e-14!39;CL:0000211!4.47e-14!39|ontology_enrichment_celltype_v019_2=CL:0002319,1.85e-16,43;CL:0000221,3.89e-16,44;CL:0000133,3.89e-16,44;CL:0000117,6.47e-16,23;CL:0000337,6.47e-16,23;CL:0000540,2.02e-15,33;CL:0000047,2.02e-15,33;CL:0000031,2.02e-15,33;CL:0000404,2.02e-15,33;CL:0000393,3.65e-14,39;CL:0000211,3.65e-14,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.65e-18!73;UBERON:0005743!1.65e-18!73;UBERON:0000073!4.08e-18!75;UBERON:0001016!4.08e-18!75;UBERON:0002020!2.95e-13!34;UBERON:0001049!1.28e-12!52;UBERON:0005068!1.28e-12!52;UBERON:0006241!1.28e-12!52;UBERON:0007135!1.28e-12!52;UBERON:0000955!2.66e-11!50;UBERON:0006238!2.66e-11!50;UBERON:0002616!4.15e-11!49;UBERON:0004121!3.24e-10!102;UBERON:0000924!3.24e-10!102;UBERON:0006601!3.24e-10!102;UBERON:0002791!3.37e-10!29;UBERON:0003528!3.37e-10!29;UBERON:0001893!3.37e-10!29;UBERON:0002346!5.68e-09!71;UBERON:0003075!5.68e-09!71;UBERON:0007284!5.68e-09!71;UBERON:0000033!1.52e-08!63;UBERON:0002780!9.21e-08!39;UBERON:0001890!9.21e-08!39;UBERON:0006240!9.21e-08!39;UBERON:0003080!9.52e-08!40;UBERON:0000153!1.72e-07!94;UBERON:0007811!8.22e-07!86;UBERON:0003056!9.90e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.07e-19,73;UBERON:0001016,1.04e-18,75;UBERON:0000073,1.24e-14,54;UBERON:0002020,6.01e-14,34;UBERON:0004121,1.45e-13,95;UBERON:0000924,1.45e-13,95;UBERON:0006601,1.45e-13,95;UBERON:0001049,3.36e-13,52;UBERON:0005068,3.36e-13,52;UBERON:0006241,3.36e-13,52;UBERON:0007135,3.36e-13,52;UBERON:0002346,2.97e-12,64;UBERON:0003075,2.97e-12,64;UBERON:0007284,2.97e-12,64;UBERON:0003528,9.68e-11,29;UBERON:0002791,9.68e-11,29;UBERON:0001893,9.68e-11,29;UBERON:0010371,3.68e-10,73;UBERON:0000955,3.89e-10,47;UBERON:0006238,3.89e-10,47;UBERON:0002616,6.13e-10,46;UBERON:0002780,4.08e-08,39;UBERON:0001890,4.08e-08,39;UBERON:0006240,4.08e-08,39;UBERON:0003080,4.24e-08,40;UBERON:0003056,3.70e-07,49;UBERON:0000956,9.71e-07,21;UBERON:0001869,9.71e-07,21;UBERON:0000203,9.71e-07,21|phase1_expression=1.44133962394315,0.697950815278722,0.909998478779072,0,0,0.503637815735669,0,1.93684985162364,0.985521055061667,1.40438715793196,1.71217968225505,0.8774937489487,1.02720437958723,1.39872643870396,0.666219523631325,0.607425802169478,0,1.57731082679119,1.37114433605739,1.27316895539409,2.04103896362567,0.496454756004426,1.04479915655574,0.639969691173627,0.45881856213434,1.72269589234506,0,0.430942465371778,1.14014051673824,0.756090389279792,0.443461021310609,1.27006134691926,0.61506478758457,0,0.577703239502549,1.16364251750945,1.02084678131185,2.51118978442145,1.5626706890476,0.523523743973798,1.17646297606203,2.73218193983378,0.485510353031154,1.6366586336825,0.912392380975631,1.83546752161682,3.12956537739216,2.18025156380447,2.19686182734472,1.55543919259427,0.699932108126813,8.62515386189829,1.34226084846189,1.45072428402269,2.35265659399725,1.54355661621568,1.14613375975503,2.06268836910977,5.66486090406874,4.23192783417626,5.07065122804943,2.03306719241479,0.889294796111139,3.1496490104849,1.97773272513395,3.5524005747305,3.89480143673926,2.68952813725088,7.98410014775278,6.75029691658453,7.57169860864975,5.99867067247988,6.18431914664518,5.02212276781312,7.95517409451362,9.19218786610021,5.50579404996943,6.51205424234457,5.83704826373725,5.14356522147756,6.12967212136145,6.77187381723788,2.51264699101243,2.25105044012672,4.43114918552749,6.77645746589436,7.40332740155335,4.47358669980721,1.4387976733305,1.13357340160178,2.02905142091174,0,0,1.07940638327563,0,0.448026887097336,1.26399978118577,0.852151612890289,0.519572009205738,1.06001872353102,1.26759077799012,0,2.54805239706646,0,0.649473123033642,0.760079596425296,0,0.91347103775248,2.33044095282455,1.1875371125186,0.693941307064543,0.304465478312141,0.691846491768175,0.753613202763113,1.05829836422134,1.0053327306374,0.494389935468748,0.722996784599558,0.884610551949874,1.29413479957927,2.20841518460394,0.969750506270444,1.86391761218122,2.04946557908083,3.77004072264219,0.766371165625774,0.718890747035522,0.599902730993408,1.01656181658452,1.49790639404823,2.74500361691176,4.14659361972453,2.43354048269187,2.55715457330331,1.66230435647648,1.29793010454206,1.83310854930569,0.622034853050465,0.758168275301024,0.420883711772948,1.95180664444056,0.689706313300419,1.0803727788321,1.65775299619287,1.76894897793452,2.0498195245576,2.24884138943349,0.517406741478031,2.37124792226126,2.4583790421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| ||
|EntrezGene=214469 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=G3UWF0,E9Q917,Q80XQ8 | |||
|association_with_transcript=65bp_to_ENSMUST00000167518,ENSMUST00000170092,NM_001160235,NM_001160236,NM_174997,uc007apj.2,uc011wje.1,uc011wjf.1_5end | |||
|description=CAGE_peak_3_at_Fam168b_5end | |||
|id=chr1:34899822..34899829,- | |||
|ontology_enrichment_celltype=CL:0002319!4.33e-16!43;CL:0000221!8.92e-16!44;CL:0000133!8.92e-16!44;CL:0000117!2.66e-15!23;CL:0000337!2.66e-15!23;CL:0000540!4.96e-15!33;CL:0000047!4.96e-15!33;CL:0000031!4.96e-15!33;CL:0000404!4.96e-15!33;CL:0000055!2.45e-14!50;CL:0000393!4.47e-14!39;CL:0000211!4.47e-14!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.85e-16,43;CL:0000221,3.89e-16,44;CL:0000133,3.89e-16,44;CL:0000117,6.47e-16,23;CL:0000337,6.47e-16,23;CL:0000540,2.02e-15,33;CL:0000047,2.02e-15,33;CL:0000031,2.02e-15,33;CL:0000404,2.02e-15,33;CL:0000393,3.65e-14,39;CL:0000211,3.65e-14,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.65e-18!73;UBERON:0005743!1.65e-18!73;UBERON:0000073!4.08e-18!75;UBERON:0001016!4.08e-18!75;UBERON:0002020!2.95e-13!34;UBERON:0001049!1.28e-12!52;UBERON:0005068!1.28e-12!52;UBERON:0006241!1.28e-12!52;UBERON:0007135!1.28e-12!52;UBERON:0000955!2.66e-11!50;UBERON:0006238!2.66e-11!50;UBERON:0002616!4.15e-11!49;UBERON:0004121!3.24e-10!102;UBERON:0000924!3.24e-10!102;UBERON:0006601!3.24e-10!102;UBERON:0002791!3.37e-10!29;UBERON:0003528!3.37e-10!29;UBERON:0001893!3.37e-10!29;UBERON:0002346!5.68e-09!71;UBERON:0003075!5.68e-09!71;UBERON:0007284!5.68e-09!71;UBERON:0000033!1.52e-08!63;UBERON:0002780!9.21e-08!39;UBERON:0001890!9.21e-08!39;UBERON:0006240!9.21e-08!39;UBERON:0003080!9.52e-08!40;UBERON:0000153!1.72e-07!94;UBERON:0007811!8.22e-07!86;UBERON:0003056!9.90e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.07e-19,73;UBERON:0001016,1.04e-18,75;UBERON:0000073,1.24e-14,54;UBERON:0002020,6.01e-14,34;UBERON:0004121,1.45e-13,95;UBERON:0000924,1.45e-13,95;UBERON:0006601,1.45e-13,95;UBERON:0001049,3.36e-13,52;UBERON:0005068,3.36e-13,52;UBERON:0006241,3.36e-13,52;UBERON:0007135,3.36e-13,52;UBERON:0002346,2.97e-12,64;UBERON:0003075,2.97e-12,64;UBERON:0007284,2.97e-12,64;UBERON:0003528,9.68e-11,29;UBERON:0002791,9.68e-11,29;UBERON:0001893,9.68e-11,29;UBERON:0010371,3.68e-10,73;UBERON:0000955,3.89e-10,47;UBERON:0006238,3.89e-10,47;UBERON:0002616,6.13e-10,46;UBERON:0002780,4.08e-08,39;UBERON:0001890,4.08e-08,39;UBERON:0006240,4.08e-08,39;UBERON:0003080,4.24e-08,40;UBERON:0003056,3.70e-07,49;UBERON:0000956,9.71e-07,21;UBERON:0001869,9.71e-07,21;UBERON:0000203,9.71e-07,21 | |||
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| |||
|short_description=p3@Fam168b | |||
}} |
Revision as of 20:16, 13 September 2013
Short description: | p3@Fam168b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Fam168b_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 65bp_to_ENSMUST00000167518, ENSMUST00000170092, NM_001160235, NM_001160236, NM_174997, uc007apj.2, uc011wje.1, uc011wjf.1_5end |
EntrezGene: | Fam168b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.85e-16 | 43 |
ectodermal cell | 3.89e-16 | 44 |
neurectodermal cell | 3.89e-16 | 44 |
CNS neuron (sensu Vertebrata) | 6.47e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.47e-16 | 23 |
neuron | 2.02e-15 | 33 |
neuronal stem cell | 2.02e-15 | 33 |
neuroblast | 2.02e-15 | 33 |
electrically signaling cell | 2.02e-15 | 33 |
electrically responsive cell | 3.65e-14 | 39 |
electrically active cell | 3.65e-14 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.07e-19 | 73 |
nervous system | 1.04e-18 | 75 |
regional part of nervous system | 1.24e-14 | 54 |
gray matter | 6.01e-14 | 34 |
ectoderm-derived structure | 1.45e-13 | 95 |
ectoderm | 1.45e-13 | 95 |
presumptive ectoderm | 1.45e-13 | 95 |
neural tube | 3.36e-13 | 52 |
neural rod | 3.36e-13 | 52 |
future spinal cord | 3.36e-13 | 52 |
neural keel | 3.36e-13 | 52 |
neurectoderm | 2.97e-12 | 64 |
neural plate | 2.97e-12 | 64 |
presumptive neural plate | 2.97e-12 | 64 |
brain grey matter | 9.68e-11 | 29 |
regional part of telencephalon | 9.68e-11 | 29 |
telencephalon | 9.68e-11 | 29 |
ecto-epithelium | 3.68e-10 | 73 |
brain | 3.89e-10 | 47 |
future brain | 3.89e-10 | 47 |
regional part of brain | 6.13e-10 | 46 |
regional part of forebrain | 4.08e-08 | 39 |
forebrain | 4.08e-08 | 39 |
future forebrain | 4.08e-08 | 39 |
anterior neural tube | 4.24e-08 | 40 |
pre-chordal neural plate | 3.70e-07 | 49 |
cerebral cortex | 9.71e-07 | 21 |
cerebral hemisphere | 9.71e-07 | 21 |
pallium | 9.71e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.