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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007997
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000012
|is_a=EFO:0002091;;FF:0000012
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11325
|name=Alveolar Epithelial Cells, donor1
|name=Alveolar Epithelial Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=GZF1:1.77795916531;SNAI1..3:1.44707786997;TFCP2:1.37877251953;XCPE1{core}:1.31656078077;PBX1:1.30819104442;SRF:1.26340664187;LEF1_TCF7_TCF7L1,2:1.22412897826;GTF2A1,2:1.22281659213;HOX{A5,B5}:1.16280602126;ZEB1:1.16143316644;ZNF148:1.15078551392;TBP:1.11340701085;TEAD1:1.0820150788;MYOD1:1.06897090223;ZNF423:1.04500984015;TLX1..3_NFIC{dimer}:0.982366297008;ESRRA:0.940684329722;TBX4,5:0.929162615475;EBF1:0.890770017142;LMO2:0.884788800273;POU2F1..3:0.864884847092;bHLH_family:0.861296848222;JUN:0.842530908024;HAND1,2:0.813277695106;TP53:0.680529813723;ZIC1..3:0.667013100571;NKX2-3_NKX2-5:0.648620523075;GLI1..3:0.621093361179;SP1:0.59489887867;NR3C1:0.571500787347;NANOG:0.561804080901;NR5A1,2:0.553926120621;PPARG:0.536657779567;SOX{8,9,10}:0.450542044267;LHX3,4:0.444345294216;HSF1,2:0.442562949023;HIC1:0.436899873168;POU6F1:0.432865300675;HIF1A:0.42169960307;STAT5{A,B}:0.393567011767;FOS_FOS{B,L1}_JUN{B,D}:0.388776070067;PAX8:0.372766636562;RXRA_VDR{dimer}:0.358165650163;SPZ1:0.357341332731;TFAP2{A,C}:0.33079477873;TAL1_TCF{3,4,12}:0.318144460051;GFI1B:0.312172030433;TFAP2B:0.302687710641;BACH2:0.301571361166;ZBTB6:0.298883836201;CRX:0.29646764048;HNF1A:0.287441594198;FOSL2:0.285455194249;FOXM1:0.241183977459;SOX2:0.239022736606;NR6A1:0.238237519649;E2F1..5:0.235530795299;NFE2L1:0.232434165048;ONECUT1,2:0.220177520804;PITX1..3:0.204337746489;MTF1:0.198328619429;GFI1:0.190943712984;FOXL1:0.182354903083;T:0.179511784172;EP300:0.162053014162;CDC5L:0.158898118578;KLF4:0.153773449774;TFDP1:0.137902129773;IKZF1:0.136927116066;ZNF238:0.12793411654;FOX{I1,J2}:0.125000531521;HNF4A_NR2F1,2:0.0957264034017;HLF:0.0950144033232;NFE2:0.0904929919813;ELK1,4_GABP{A,B1}:0.0863790488644;NFE2L2:0.0796129553954;FOXQ1:0.0791181068139;HOX{A4,D4}:0.0782380853475;RREB1:0.0564328030586;RXR{A,B,G}:0.0525593533478;ESR1:0.0505283123066;GATA6:0.0334847743954;GTF2I:0.0190048435633;NFY{A,B,C}:0.00817384733592;MAZ:0.00505362157425;HES1:0.00291960683937;SOX17:0.00199252759526;POU3F1..4:0.00187738669471;ARID5B:-0.0166659653545;DBP:-0.0197999102569;TEF:-0.0228066430304;MEF2{A,B,C,D}:-0.026007785142;FOX{F1,F2,J1}:-0.0509576362321;AR:-0.0603218094738;PRRX1,2:-0.122808768491;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.134276129486;HOXA9_MEIS1:-0.138148152309;NFKB1_REL_RELA:-0.142573602818;ZNF143:-0.152523354126;PAX5:-0.16082463118;POU1F1:-0.169042230788;ETS1,2:-0.180835563104;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.181953476196;UFEwm:-0.193225681664;NKX3-2:-0.19419742271;REST:-0.199100797652;OCT4_SOX2{dimer}:-0.215859557582;MTE{core}:-0.217460341359;ZNF384:-0.224278353146;ATF6:-0.228614907356;MED-1{core}:-0.245232346544;TFAP4:-0.247630907385;ATF2:-0.254464723001;RUNX1..3:-0.255715821517;MYB:-0.265292301489;PATZ1:-0.276161699891;CEBPA,B_DDIT3:-0.290353209417;NR1H4:-0.30508538148;STAT2,4,6:-0.305246493514;NFIL3:-0.320371430296;HMX1:-0.327300166008;MYBL2:-0.328041364177;AIRE:-0.344216266992;TOPORS:-0.346865580828;NHLH1,2:-0.36528001512;EN1,2:-0.367305102408;POU5F1:-0.370151149016;FOXA2:-0.376609633049;RFX1:-0.385447488007;MZF1:-0.387836207998;PAX1,9:-0.399453192997;HOX{A6,A7,B6,B7}:-0.40843700913;ALX4:-0.419650973728;VSX1,2:-0.427639873252;XBP1:-0.435500132982;RORA:-0.460444607612;ADNP_IRX_SIX_ZHX:-0.462107767097;SPIB:-0.463407578267;RFX2..5_RFXANK_RFXAP:-0.493103013559;GCM1,2:-0.521378071486;SMAD1..7,9:-0.527541972883;NKX2-2,8:-0.539363576167;NKX3-1:-0.552718528477;NRF1:-0.57031076793;CUX2:-0.611983909839;HMGA1,2:-0.616921037342;SOX5:-0.620475980883;MAFB:-0.633247413588;EGR1..3:-0.642506683325;TLX2:-0.653551016317;ALX1:-0.679280602338;ZFP161:-0.684585413981;ELF1,2,4:-0.685561506913;PAX3,7:-0.686257433456;NFATC1..3:-0.702093455277;PRDM1:-0.726511250507;PAX2:-0.727268764825;NKX6-1,2:-0.728268570213;YY1:-0.728462457036;AHR_ARNT_ARNT2:-0.734859984488;HBP1_HMGB_SSRP1_UBTF:-0.744583666349;MYFfamily:-0.74528214581;FOXO1,3,4:-0.747389513578;SPI1:-0.767551198741;EVI1:-0.795298756718;PAX4:-0.812962386165;TGIF1:-0.82607367344;FOX{D1,D2}:-0.840398540926;BREu{core}:-0.873120195397;CDX1,2,4:-0.90355869678;FOXP1:-0.915884750378;DMAP1_NCOR{1,2}_SMARC:-0.917289549949;FOXN1:-0.929820502292;FOXP3:-0.956050853812;STAT1,3:-0.971487620905;IRF7:-0.978519659;PDX1:-0.989155861569;ATF4:-1.00129345632;IRF1,2:-1.01033111;ATF5_CREB3:-1.01171946518;CREB1:-1.01866891582;PAX6:-1.0348597074;NANOG{mouse}:-1.09197305763;FOXD3:-1.097040582;ZBTB16:-1.12345011267;NFIX:-1.18972923882;NKX2-1,4:-1.19101331759;IKZF2:-1.2661562236;GATA4:-1.46624617171;RBPJ:-1.47991944335;SREBF1,2:-1.58707860784;BPTF:-1.68211011279
|top_motifs=GZF1:1.77795916531;SNAI1..3:1.44707786997;TFCP2:1.37877251953;XCPE1{core}:1.31656078077;PBX1:1.30819104442;SRF:1.26340664187;LEF1_TCF7_TCF7L1,2:1.22412897826;GTF2A1,2:1.22281659213;HOX{A5,B5}:1.16280602126;ZEB1:1.16143316644;ZNF148:1.15078551392;TBP:1.11340701085;TEAD1:1.0820150788;MYOD1:1.06897090223;ZNF423:1.04500984015;TLX1..3_NFIC{dimer}:0.982366297008;ESRRA:0.940684329722;TBX4,5:0.929162615475;EBF1:0.890770017142;LMO2:0.884788800273;POU2F1..3:0.864884847092;bHLH_family:0.861296848222;JUN:0.842530908024;HAND1,2:0.813277695106;TP53:0.680529813723;ZIC1..3:0.667013100571;NKX2-3_NKX2-5:0.648620523075;GLI1..3:0.621093361179;SP1:0.59489887867;NR3C1:0.571500787347;NANOG:0.561804080901;NR5A1,2:0.553926120621;PPARG:0.536657779567;SOX{8,9,10}:0.450542044267;LHX3,4:0.444345294216;HSF1,2:0.442562949023;HIC1:0.436899873168;POU6F1:0.432865300675;HIF1A:0.42169960307;STAT5{A,B}:0.393567011767;FOS_FOS{B,L1}_JUN{B,D}:0.388776070067;PAX8:0.372766636562;RXRA_VDR{dimer}:0.358165650163;SPZ1:0.357341332731;TFAP2{A,C}:0.33079477873;TAL1_TCF{3,4,12}:0.318144460051;GFI1B:0.312172030433;TFAP2B:0.302687710641;BACH2:0.301571361166;ZBTB6:0.298883836201;CRX:0.29646764048;HNF1A:0.287441594198;FOSL2:0.285455194249;FOXM1:0.241183977459;SOX2:0.239022736606;NR6A1:0.238237519649;E2F1..5:0.235530795299;NFE2L1:0.232434165048;ONECUT1,2:0.220177520804;PITX1..3:0.204337746489;MTF1:0.198328619429;GFI1:0.190943712984;FOXL1:0.182354903083;T:0.179511784172;EP300:0.162053014162;CDC5L:0.158898118578;KLF4:0.153773449774;TFDP1:0.137902129773;IKZF1:0.136927116066;ZNF238:0.12793411654;FOX{I1,J2}:0.125000531521;HNF4A_NR2F1,2:0.0957264034017;HLF:0.0950144033232;NFE2:0.0904929919813;ELK1,4_GABP{A,B1}:0.0863790488644;NFE2L2:0.0796129553954;FOXQ1:0.0791181068139;HOX{A4,D4}:0.0782380853475;RREB1:0.0564328030586;RXR{A,B,G}:0.0525593533478;ESR1:0.0505283123066;GATA6:0.0334847743954;GTF2I:0.0190048435633;NFY{A,B,C}:0.00817384733592;MAZ:0.00505362157425;HES1:0.00291960683937;SOX17:0.00199252759526;POU3F1..4:0.00187738669471;ARID5B:-0.0166659653545;DBP:-0.0197999102569;TEF:-0.0228066430304;MEF2{A,B,C,D}:-0.026007785142;FOX{F1,F2,J1}:-0.0509576362321;AR:-0.0603218094738;PRRX1,2:-0.122808768491;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.134276129486;HOXA9_MEIS1:-0.138148152309;NFKB1_REL_RELA:-0.142573602818;ZNF143:-0.152523354126;PAX5:-0.16082463118;POU1F1:-0.169042230788;ETS1,2:-0.180835563104;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.181953476196;UFEwm:-0.193225681664;NKX3-2:-0.19419742271;REST:-0.199100797652;OCT4_SOX2{dimer}:-0.215859557582;MTE{core}:-0.217460341359;ZNF384:-0.224278353146;ATF6:-0.228614907356;MED-1{core}:-0.245232346544;TFAP4:-0.247630907385;ATF2:-0.254464723001;RUNX1..3:-0.255715821517;MYB:-0.265292301489;PATZ1:-0.276161699891;CEBPA,B_DDIT3:-0.290353209417;NR1H4:-0.30508538148;STAT2,4,6:-0.305246493514;NFIL3:-0.320371430296;HMX1:-0.327300166008;MYBL2:-0.328041364177;AIRE:-0.344216266992;TOPORS:-0.346865580828;NHLH1,2:-0.36528001512;EN1,2:-0.367305102408;POU5F1:-0.370151149016;FOXA2:-0.376609633049;RFX1:-0.385447488007;MZF1:-0.387836207998;PAX1,9:-0.399453192997;HOX{A6,A7,B6,B7}:-0.40843700913;ALX4:-0.419650973728;VSX1,2:-0.427639873252;XBP1:-0.435500132982;RORA:-0.460444607612;ADNP_IRX_SIX_ZHX:-0.462107767097;SPIB:-0.463407578267;RFX2..5_RFXANK_RFXAP:-0.493103013559;GCM1,2:-0.521378071486;SMAD1..7,9:-0.527541972883;NKX2-2,8:-0.539363576167;NKX3-1:-0.552718528477;NRF1:-0.57031076793;CUX2:-0.611983909839;HMGA1,2:-0.616921037342;SOX5:-0.620475980883;MAFB:-0.633247413588;EGR1..3:-0.642506683325;TLX2:-0.653551016317;ALX1:-0.679280602338;ZFP161:-0.684585413981;ELF1,2,4:-0.685561506913;PAX3,7:-0.686257433456;NFATC1..3:-0.702093455277;PRDM1:-0.726511250507;PAX2:-0.727268764825;NKX6-1,2:-0.728268570213;YY1:-0.728462457036;AHR_ARNT_ARNT2:-0.734859984488;HBP1_HMGB_SSRP1_UBTF:-0.744583666349;MYFfamily:-0.74528214581;FOXO1,3,4:-0.747389513578;SPI1:-0.767551198741;EVI1:-0.795298756718;PAX4:-0.812962386165;TGIF1:-0.82607367344;FOX{D1,D2}:-0.840398540926;BREu{core}:-0.873120195397;CDX1,2,4:-0.90355869678;FOXP1:-0.915884750378;DMAP1_NCOR{1,2}_SMARC:-0.917289549949;FOXN1:-0.929820502292;FOXP3:-0.956050853812;STAT1,3:-0.971487620905;IRF7:-0.978519659;PDX1:-0.989155861569;ATF4:-1.00129345632;IRF1,2:-1.01033111;ATF5_CREB3:-1.01171946518;CREB1:-1.01866891582;PAX6:-1.0348597074;NANOG{mouse}:-1.09197305763;FOXD3:-1.097040582;ZBTB16:-1.12345011267;NFIX:-1.18972923882;NKX2-1,4:-1.19101331759;IKZF2:-1.2661562236;GATA4:-1.46624617171;RBPJ:-1.47991944335;SREBF1,2:-1.58707860784;BPTF:-1.68211011279
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007997
|accession_numbers=DRX008104;DRR008976;DRZ000401;DRZ001786;CAGE
|library_id=CNhs11325
}}
}}

Revision as of 19:09, 16 October 2013


Name:Alveolar Epithelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexNA
ageNA
cell typeepithelial cell of lung, small airway
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5020
catalog numberSC3205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007997
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.053
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.174
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0954
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0946
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.412
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.148
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.025
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.00391
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0954
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.507
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0954
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.433
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0116
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0954
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.461
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.311
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.754
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0954
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11325

Jaspar motifP-value
MA0002.20.848
MA0003.10.372
MA0004.10.745
MA0006.10.184
MA0007.10.029
MA0009.10.68
MA0014.10.79
MA0017.10.0876
MA0018.20.181
MA0019.10.29
MA0024.10.791
MA0025.10.605
MA0027.10.536
MA0028.10.309
MA0029.10.0839
MA0030.10.319
MA0031.10.0617
MA0035.20.00345
MA0038.10.259
MA0039.20.0923
MA0040.10.458
MA0041.10.554
MA0042.10.503
MA0043.10.0269
MA0046.10.00335
MA0047.20.375
MA0048.10.851
MA0050.11.98854e-10
MA0051.17.32045e-6
MA0052.10.329
MA0055.10.072
MA0057.10.149
MA0058.10.362
MA0059.10.549
MA0060.10.00975
MA0061.10.802
MA0062.20.0107
MA0065.20.0102
MA0066.10.354
MA0067.10.00441
MA0068.10.764
MA0069.10.805
MA0070.10.0609
MA0071.10.262
MA0072.10.799
MA0073.10.864
MA0074.10.679
MA0076.10.0689
MA0077.10.229
MA0078.10.408
MA0079.20.946
MA0080.25.57889e-4
MA0081.10.0297
MA0083.11.14006e-9
MA0084.10.0734
MA0087.10.729
MA0088.10.608
MA0090.17.56676e-5
MA0091.10.763
MA0092.10.253
MA0093.10.674
MA0099.25.78459e-11
MA0100.10.229
MA0101.10.864
MA0102.20.0464
MA0103.11.51521e-5
MA0104.20.646
MA0105.10.897
MA0106.10.0636
MA0107.10.871
MA0108.22.25875e-14
MA0111.10.782
MA0112.20.0348
MA0113.10.273
MA0114.10.0315
MA0115.10.157
MA0116.10.57
MA0117.10.24
MA0119.10.0677
MA0122.10.889
MA0124.10.157
MA0125.10.0688
MA0131.10.173
MA0135.10.191
MA0136.10.0181
MA0137.20.156
MA0138.20.999
MA0139.10.421
MA0140.10.183
MA0141.10.175
MA0142.10.734
MA0143.10.179
MA0144.10.883
MA0145.10.0372
MA0146.10.114
MA0147.10.928
MA0148.10.191
MA0149.10.255
MA0150.10.416
MA0152.10.438
MA0153.10.0436
MA0154.10.253
MA0155.10.121
MA0156.10.152
MA0157.10.22
MA0159.10.0701
MA0160.10.243
MA0162.10.114
MA0163.10.703
MA0164.10.762
MA0258.10.261
MA0259.10.885



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11325

Novel motifP-value
10.983
100.259
1000.938
1010.123
1020.959
1030.32
1040.649
1050.075
1060.0284
1070.0146
1080.578
1090.0243
110.308
1100.184
1110.433
1120.593
1130.958
1140.78
1150.918
1160.157
1170.845
1180.8
1190.489
120.931
1200.393
1210.24
1220.245
1230.062
1240.872
1250.34
1260.41
1270.779
1280.184
1290.173
130.251
1300.216
1310.877
1320.224
1330.307
1340.443
1350.291
1360.419
1370.155
1380.358
1390.806
140.88
1400.988
1410.4
1420.718
1430.334
1440.372
1450.214
1460.0329
1470.974
1480.185
1490.114
150.386
1500.342
1510.543
1520.0503
1530.681
1540.343
1550.4
1560.139
1570.524
1580.676
1590.81
160.218
1600.0366
1610.641
1620.0998
1630.568
1640.356
1650.18
1660.587
1670.0715
1680.758
1690.119
170.225
180.154
190.486
20.193
200.613
210.993
220.295
230.29
240.226
250.793
260.188
270.373
280.414
290.863
30.932
300.0696
310.75
320.451
330.208
340.246
350.249
360.987
370.41
380.323
390.109
40.257
400.00328
410.967
420.694
430.367
440.863
450.227
460.398
470.587
480.391
490.506
50.757
500.224
510.507
520.244
530.668
540.626
550.635
560.264
570.662
580.839
590.0596
60.546
600.298
610.367
620.796
630.176
640.312
650.119
660.128
670.454
680.236
690.017
70.364
700.897
710.495
720.664
730.0591
740.161
750.955
760.178
770.00204
780.719
790.708
80.194
800.752
810.377
820.627
830.717
840.641
850.85
860.813
870.205
880.24
890.131
90.687
900.0279
910.317
920.789
930.822
940.922
950.122
960.933
970.615
980.491
990.00165



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11325


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000012 (human alveolar epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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