FFCP PHASE1:Hg19::chr1:162601774..162601792,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4921|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2731|TSSclassifier=S|UniProt=Q5T244|association_with_transcript=-8bp_to_ENST00000415555_5end|coexpression_cluster_id=C41|description=CAGE_peak_13_at_DDR2_5end|id=chr1:162601774..162601792,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;1.23e-38;3!UBERON:0001045;2.37e-29;1!UBERON:0005425;2.37e-29;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.80e-30!115;UBERON:0001049!7.05e-14!57;UBERON:0005068!7.05e-14!57;UBERON:0006241!7.05e-14!57;UBERON:0007135!7.05e-14!57;UBERON:0002346!1.25e-13!90;UBERON:0003075!1.87e-13!86;UBERON:0007284!1.87e-13!86;UBERON:0002616!3.29e-13!59;UBERON:0002780!6.62e-12!41;UBERON:0001890!6.62e-12!41;UBERON:0006240!6.62e-12!41;UBERON:0003080!1.60e-11!42;UBERON:0000955!2.86e-11!69;UBERON:0006238!2.86e-11!69;UBERON:0000073!3.35e-11!94;UBERON:0001016!3.35e-11!94;UBERON:0005743!8.22e-11!86;UBERON:0001017!1.78e-10!82;UBERON:0001893!6.01e-10!34;UBERON:0002791!6.88e-09!33;UBERON:0003056!8.29e-09!61;UBERON:0002619!1.08e-08!22;UBERON:0001896!2.24e-08!3;UBERON:0005290!2.24e-08!3;UBERON:0010096!2.24e-08!3;UBERON:0000924!5.15e-08!173;UBERON:0006601!5.15e-08!173;UBERON:0004121!9.13e-08!169;UBERON:0001869!1.07e-07!32;UBERON:0002298!1.43e-07!8;UBERON:0000956!1.99e-07!25;UBERON:0000203!1.99e-07!25;UBERON:0002020!3.20e-07!34;UBERON:0003528!3.20e-07!34|ontology_enrichment_uberon_v019=UBERON:0001896;1.49e-38;3!UBERON:0005290;1.49e-38;3!UBERON:0001154;2.37e-29;1!UBERON:0000941;2.37e-29;1!UBERON:0001153;2.37e-29;1!UBERON:0001785;2.37e-29;1!UBERON:0002464;2.37e-29;1!UBERON:0004904;2.37e-29;1!UBERON:0009854;2.37e-29;1!UBERON:0001021;2.37e-29;1!UBERON:0004732;2.82e-20;13!UBERON:0002298;7.13e-20;6!UBERON:0003714;2.05e-15;2!UBERON:0005162;2.05e-15;2!UBERON:0000122;2.05e-15;2!UBERON:0002104;7.13e-13;21!UBERON:0001032;2.35e-11;24!UBERON:0004456;2.35e-11;24!UBERON:0004733;1.85e-10;12!UBERON:0002028;1.85e-10;12!UBERON:0009856;2.26e-08;4!UBERON:0000966;4.79e-07;5!UBERON:0005388;4.79e-07;5!UBERON:0001802;4.79e-07;5!UBERON:0004907;6.04e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001896,1.23e-38,3;UBERON:0005290,1.23e-38,3;UBERON:0010096,1.23e-38,3;UBERON:0000941,2.37e-29,1;UBERON:0001785,2.37e-29,1;UBERON:0002464,2.37e-29,1;UBERON:0004904,2.37e-29,1;UBERON:0001021,2.37e-29,1;UBERON:0003902,2.37e-29,1;UBERON:0005425,2.37e-29,1;UBERON:0001154,3.16e-29,1;UBERON:0001153,3.16e-29,1;UBERON:0001045,3.16e-29,1;UBERON:0004732,2.64e-20,13;UBERON:0000966,6.48e-20,6;UBERON:0005388,6.48e-20,6;UBERON:0001802,6.48e-20,6;UBERON:0002298,6.48e-20,6;UBERON:0003714,2.05e-15,2;UBERON:0005162,2.05e-15,2;UBERON:0000122,2.05e-15,2;UBERON:0000970,6.58e-13,21;UBERON:0002104,6.58e-13,21;UBERON:0000020,2.19e-11,24;UBERON:0001032,2.19e-11,24;UBERON:0004456,2.19e-11,24;UBERON:0004733,1.77e-10,12;UBERON:0002028,1.77e-10,12;UBERON:0007277,1.77e-10,12;UBERON:0003076,1.42e-08,15;UBERON:0003057,1.42e-08,15;UBERON:0001781,2.26e-08,4;UBERON:0004907,6.39e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267899184852239,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0.337552664482532,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0.300343057843917,0,0,0,0.1466765716419,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0.082509499920588,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,1.10513566212459,0,0,0,0.311039587661807,0,0,0,0.690503839458535,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0,0,0.442317039724898,0,0.219385397153973,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0.269604531922708,0,0,0,0,0,0.789168805698781,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,1.58186518546373,0,0,0.0633107959558787,0,0,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4921 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2731 | |||
|TSSclassifier=S | |||
|UniProt=Q5T244 | |||
|association_with_transcript=-8bp_to_ENST00000415555_5end | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_13_at_DDR2_5end | |||
|id=chr1:162601774..162601792,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.23e-38;3!UBERON:0001045;2.37e-29;1!UBERON:0005425;2.37e-29;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.80e-30!115;UBERON:0001049!7.05e-14!57;UBERON:0005068!7.05e-14!57;UBERON:0006241!7.05e-14!57;UBERON:0007135!7.05e-14!57;UBERON:0002346!1.25e-13!90;UBERON:0003075!1.87e-13!86;UBERON:0007284!1.87e-13!86;UBERON:0002616!3.29e-13!59;UBERON:0002780!6.62e-12!41;UBERON:0001890!6.62e-12!41;UBERON:0006240!6.62e-12!41;UBERON:0003080!1.60e-11!42;UBERON:0000955!2.86e-11!69;UBERON:0006238!2.86e-11!69;UBERON:0000073!3.35e-11!94;UBERON:0001016!3.35e-11!94;UBERON:0005743!8.22e-11!86;UBERON:0001017!1.78e-10!82;UBERON:0001893!6.01e-10!34;UBERON:0002791!6.88e-09!33;UBERON:0003056!8.29e-09!61;UBERON:0002619!1.08e-08!22;UBERON:0001896!2.24e-08!3;UBERON:0005290!2.24e-08!3;UBERON:0010096!2.24e-08!3;UBERON:0000924!5.15e-08!173;UBERON:0006601!5.15e-08!173;UBERON:0004121!9.13e-08!169;UBERON:0001869!1.07e-07!32;UBERON:0002298!1.43e-07!8;UBERON:0000956!1.99e-07!25;UBERON:0000203!1.99e-07!25;UBERON:0002020!3.20e-07!34;UBERON:0003528!3.20e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0001896;1.49e-38;3!UBERON:0005290;1.49e-38;3!UBERON:0001154;2.37e-29;1!UBERON:0000941;2.37e-29;1!UBERON:0001153;2.37e-29;1!UBERON:0001785;2.37e-29;1!UBERON:0002464;2.37e-29;1!UBERON:0004904;2.37e-29;1!UBERON:0009854;2.37e-29;1!UBERON:0001021;2.37e-29;1!UBERON:0004732;2.82e-20;13!UBERON:0002298;7.13e-20;6!UBERON:0003714;2.05e-15;2!UBERON:0005162;2.05e-15;2!UBERON:0000122;2.05e-15;2!UBERON:0002104;7.13e-13;21!UBERON:0001032;2.35e-11;24!UBERON:0004456;2.35e-11;24!UBERON:0004733;1.85e-10;12!UBERON:0002028;1.85e-10;12!UBERON:0009856;2.26e-08;4!UBERON:0000966;4.79e-07;5!UBERON:0005388;4.79e-07;5!UBERON:0001802;4.79e-07;5!UBERON:0004907;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,1.23e-38,3;UBERON:0005290,1.23e-38,3;UBERON:0010096,1.23e-38,3;UBERON:0000941,2.37e-29,1;UBERON:0001785,2.37e-29,1;UBERON:0002464,2.37e-29,1;UBERON:0004904,2.37e-29,1;UBERON:0001021,2.37e-29,1;UBERON:0003902,2.37e-29,1;UBERON:0005425,2.37e-29,1;UBERON:0001154,3.16e-29,1;UBERON:0001153,3.16e-29,1;UBERON:0001045,3.16e-29,1;UBERON:0004732,2.64e-20,13;UBERON:0000966,6.48e-20,6;UBERON:0005388,6.48e-20,6;UBERON:0001802,6.48e-20,6;UBERON:0002298,6.48e-20,6;UBERON:0003714,2.05e-15,2;UBERON:0005162,2.05e-15,2;UBERON:0000122,2.05e-15,2;UBERON:0000970,6.58e-13,21;UBERON:0002104,6.58e-13,21;UBERON:0000020,2.19e-11,24;UBERON:0001032,2.19e-11,24;UBERON:0004456,2.19e-11,24;UBERON:0004733,1.77e-10,12;UBERON:0002028,1.77e-10,12;UBERON:0007277,1.77e-10,12;UBERON:0003076,1.42e-08,15;UBERON:0003057,1.42e-08,15;UBERON:0001781,2.26e-08,4;UBERON:0004907,6.39e-07,5 | |||
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|short_description=p13@DDR2 | |||
}} |
Revision as of 01:26, 12 September 2013
Short description: | p13@DDR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_DDR2_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -8bp_to_ENST00000415555_5end |
EntrezGene: | DDR2 |
HGNC: | 2731 |
UniProt: | Q5T244 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 1.23e-38 | 3 |
myelencephalon | 1.23e-38 | 3 |
future myelencephalon | 1.23e-38 | 3 |
cranial nerve II | 2.37e-29 | 1 |
cranial nerve | 2.37e-29 | 1 |
nerve trunk | 2.37e-29 | 1 |
nerve connecting eye with brain | 2.37e-29 | 1 |
nerve | 2.37e-29 | 1 |
retinal neural layer | 2.37e-29 | 1 |
presumptive neural retina | 2.37e-29 | 1 |
vermiform appendix | 3.16e-29 | 1 |
caecum | 3.16e-29 | 1 |
midgut | 3.16e-29 | 1 |
segmental subdivision of nervous system | 2.64e-20 | 13 |
retina | 6.48e-20 | 6 |
photoreceptor array | 6.48e-20 | 6 |
posterior segment of eyeball | 6.48e-20 | 6 |
brainstem | 6.48e-20 | 6 |
neural tissue | 2.05e-15 | 2 |
multi cell component structure | 2.05e-15 | 2 |
neuron projection bundle | 2.05e-15 | 2 |
eye | 6.58e-13 | 21 |
visual system | 6.58e-13 | 21 |
sense organ | 2.19e-11 | 24 |
sensory system | 2.19e-11 | 24 |
entire sense organ system | 2.19e-11 | 24 |
segmental subdivision of hindbrain | 1.77e-10 | 12 |
hindbrain | 1.77e-10 | 12 |
presumptive hindbrain | 1.77e-10 | 12 |
posterior neural tube | 1.42e-08 | 15 |
chordal neural plate | 1.42e-08 | 15 |
layer of retina | 2.26e-08 | 4 |
lower digestive tract | 6.39e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.