FFCP PHASE1:Hg19::chr12:53320245..53320259,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3856|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6446|TSSclassifier=S|UniProt=F8VXB4,Q7L4M3|association_with_transcript=0bp_to_ENST00000552150,uc009zmk.1_5end|description=CAGE_peak_4_at_KRT8_5end|id=chr12:53320245..53320259,-|ontology_enrichment_celltype=CL:0000066!1.71e-27!254;CL:0000077!8.05e-16!19;CL:1000507!2.90e-07!12;CL:1000494!2.90e-07!12;CL:0000076!6.83e-07!62;CL:1000449!7.37e-07!16|ontology_enrichment_celltype_v019=CL:0000077;1.21e-26;19!CL:1000507;4.36e-11;10!CL:1000494;4.36e-11;10!CL:1000497;4.51e-10;17!CL:0002518;4.51e-10;17!CL:1000449;5.38e-10;15!CL:0002681;1.30e-08;12!CL:0002584;1.30e-08;12|ontology_enrichment_celltype_v019_2=CL:0000077,8.66e-27,19;CL:0000066,1.68e-26,253;CL:1000507,3.09e-11,10;CL:1000494,3.09e-11,10;CL:1000449,4.04e-10,15;CL:1000497,4.06e-10,17;CL:0002518,4.06e-10,17;CL:0002681,1.06e-08,12;CL:0002584,1.06e-08,12;CL:0000213,2.93e-07,58;CL:0000215,2.93e-07,58;CL:0000076,4.72e-07,63|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!2.35e-24!106;DOID:0050687!2.63e-22!143;DOID:162!2.28e-19!235;DOID:14566!8.32e-19!239;DOID:299!2.01e-09!25|ontology_enrichment_disease_v019=DOID:299;1.18e-15;25!DOID:170;3.31e-09;6|ontology_enrichment_disease_v019_2=DOID:305,4.08e-18,106;DOID:162,3.72e-16,235;DOID:14566,4.44e-16,239;DOID:0050687,5.28e-16,143;DOID:299,6.89e-16,25;DOID:170,2.36e-09,6|ontology_enrichment_uberon=UBERON:0003104!4.99e-12!238;UBERON:0009142!4.99e-12!238;UBERON:0004921!1.12e-11!129;UBERON:0004185!1.12e-11!129;UBERON:0000466!1.55e-11!126;UBERON:0001007!5.16e-11!155;UBERON:0001555!5.16e-11!155;UBERON:0007026!5.16e-11!155;UBERON:0004119!1.10e-10!169;UBERON:0000925!1.10e-10!169;UBERON:0006595!1.10e-10!169;UBERON:0000077!2.50e-10!130;UBERON:0003886!5.30e-10!63;UBERON:0000464!8.28e-10!104;UBERON:0005177!1.48e-09!107;UBERON:0005409!3.31e-09!35;UBERON:0002100!4.27e-09!216;UBERON:0000160!4.42e-09!27;UBERON:0000058!1.03e-08!26;UBERON:0001048!1.44e-08!168;UBERON:0002553!2.01e-08!70;UBERON:0001041!5.34e-08!98;UBERON:0000481!1.58e-07!347;UBERON:0003914!1.63e-07!118;UBERON:0005631!2.03e-07!14;UBERON:0000158!2.03e-07!14;UBERON:0009569!2.65e-07!113;UBERON:0009773!2.90e-07!12;UBERON:0001231!2.90e-07!12;UBERON:0004810!2.90e-07!12;UBERON:0006555!5.23e-07!17;UBERON:0005103!5.23e-07!17;UBERON:0000083!5.23e-07!17;UBERON:0009201!5.23e-07!17;UBERON:0004819!5.23e-07!17;UBERON:0006553!5.23e-07!17;UBERON:0003074!5.23e-07!17;UBERON:0003060!5.23e-07!17;UBERON:0008947!7.13e-07!38;UBERON:0003258!7.13e-07!38;UBERON:0004211!7.37e-07!16;UBERON:0001285!7.37e-07!16;UBERON:0007684!7.37e-07!16;UBERON:0003220!7.37e-07!16;UBERON:0004208!7.37e-07!16|ontology_enrichment_uberon_v019=UBERON:0004211;4.36e-11;10!UBERON:0009773;4.36e-11;10!UBERON:0001231;4.36e-11;10!UBERON:0004810;4.36e-11;10!UBERON:0001851;2.49e-10;15!UBERON:0006555;5.38e-10;15!UBERON:0004819;5.38e-10;15!UBERON:0001285;5.38e-10;15!UBERON:0007684;5.38e-10;15!UBERON:0002113;3.68e-09;24!UBERON:0011143;3.68e-09;24!UBERON:0001264;1.05e-08;10!UBERON:0001225;1.30e-08;12!UBERON:0008987;1.30e-08;12!UBERON:0000489;5.59e-07;29|ontology_enrichment_uberon_v019_2=UBERON:0005177,3.42e-13,101;UBERON:0004810,3.09e-11,10;UBERON:0001851,2.09e-10,15;UBERON:0004211,4.04e-10,15;UBERON:0009773,4.04e-10,15;UBERON:0001231,4.04e-10,15;UBERON:0001285,4.04e-10,15;UBERON:0007684,4.04e-10,15;UBERON:0004208,4.04e-10,15;UBERON:0002100,1.89e-09,199;UBERON:0006555,2.56e-09,16;UBERON:0004819,2.56e-09,16;UBERON:0001264,5.81e-09,10;UBERON:0001225,1.06e-08,12;UBERON:0008987,1.06e-08,12;UBERON:0002113,3.26e-08,26;UBERON:0003918,3.26e-08,26;UBERON:0011143,3.26e-08,26;UBERON:0005095,3.26e-08,26;UBERON:0007687,3.26e-08,26;UBERON:0005172,3.27e-08,54;UBERON:0005173,3.27e-08,54;UBERON:0005631,7.21e-08,14;UBERON:0000158,7.21e-08,14;UBERON:0009569,8.80e-08,112;UBERON:0006554,1.89e-07,47;UBERON:0001008,3.42e-07,48;UBERON:0002417,7.95e-07,60;UBERON:0000916,7.95e-07,60|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,3.19454117451962,2.79120467188971,0.655324116390517,2.90143676051299,0,0.331397375727916,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.895037932904712,0,0,0,0,0,0,1.10864698731282,1.40535657109002,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0,0,0,0,0,0,0.24406205754817,0,0,0.357198913136319,1.34717623575702,0.337834441449967,0,0,0,0,0,0,0.993943903390637,1.01304409331664,0.926864265692532,0.860509862246441,0.354668382198357,5.04609840128076,0,2.71334303258876,0,0.134710672069688,0.980771418680752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43723628363248,0,0,0,0,0,0,0.794025282120147,0,0.213557388818567,0,0,0,0.515281080091258,0.18611685633159,0.168776332241266,0,0,0,0,0,0.10075209822764,0.339121184620975,0,0.272746120590835,0.286804595389004,0,0,0.116193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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3856 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6446 | |||
|TSSclassifier=S | |||
|UniProt=F8VXB4,Q7L4M3 | |||
|association_with_transcript=0bp_to_ENST00000552150,uc009zmk.1_5end | |||
|description=CAGE_peak_4_at_KRT8_5end | |||
|id=chr12:53320245..53320259,- | |||
|ontology_enrichment_celltype=CL:0000066!1.71e-27!254;CL:0000077!8.05e-16!19;CL:1000507!2.90e-07!12;CL:1000494!2.90e-07!12;CL:0000076!6.83e-07!62;CL:1000449!7.37e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.21e-26;19!CL:1000507;4.36e-11;10!CL:1000494;4.36e-11;10!CL:1000497;4.51e-10;17!CL:0002518;4.51e-10;17!CL:1000449;5.38e-10;15!CL:0002681;1.30e-08;12!CL:0002584;1.30e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,8.66e-27,19;CL:0000066,1.68e-26,253;CL:1000507,3.09e-11,10;CL:1000494,3.09e-11,10;CL:1000449,4.04e-10,15;CL:1000497,4.06e-10,17;CL:0002518,4.06e-10,17;CL:0002681,1.06e-08,12;CL:0002584,1.06e-08,12;CL:0000213,2.93e-07,58;CL:0000215,2.93e-07,58;CL:0000076,4.72e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.35e-24!106;DOID:0050687!2.63e-22!143;DOID:162!2.28e-19!235;DOID:14566!8.32e-19!239;DOID:299!2.01e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.18e-15;25!DOID:170;3.31e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.08e-18,106;DOID:162,3.72e-16,235;DOID:14566,4.44e-16,239;DOID:0050687,5.28e-16,143;DOID:299,6.89e-16,25;DOID:170,2.36e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0003104!4.99e-12!238;UBERON:0009142!4.99e-12!238;UBERON:0004921!1.12e-11!129;UBERON:0004185!1.12e-11!129;UBERON:0000466!1.55e-11!126;UBERON:0001007!5.16e-11!155;UBERON:0001555!5.16e-11!155;UBERON:0007026!5.16e-11!155;UBERON:0004119!1.10e-10!169;UBERON:0000925!1.10e-10!169;UBERON:0006595!1.10e-10!169;UBERON:0000077!2.50e-10!130;UBERON:0003886!5.30e-10!63;UBERON:0000464!8.28e-10!104;UBERON:0005177!1.48e-09!107;UBERON:0005409!3.31e-09!35;UBERON:0002100!4.27e-09!216;UBERON:0000160!4.42e-09!27;UBERON:0000058!1.03e-08!26;UBERON:0001048!1.44e-08!168;UBERON:0002553!2.01e-08!70;UBERON:0001041!5.34e-08!98;UBERON:0000481!1.58e-07!347;UBERON:0003914!1.63e-07!118;UBERON:0005631!2.03e-07!14;UBERON:0000158!2.03e-07!14;UBERON:0009569!2.65e-07!113;UBERON:0009773!2.90e-07!12;UBERON:0001231!2.90e-07!12;UBERON:0004810!2.90e-07!12;UBERON:0006555!5.23e-07!17;UBERON:0005103!5.23e-07!17;UBERON:0000083!5.23e-07!17;UBERON:0009201!5.23e-07!17;UBERON:0004819!5.23e-07!17;UBERON:0006553!5.23e-07!17;UBERON:0003074!5.23e-07!17;UBERON:0003060!5.23e-07!17;UBERON:0008947!7.13e-07!38;UBERON:0003258!7.13e-07!38;UBERON:0004211!7.37e-07!16;UBERON:0001285!7.37e-07!16;UBERON:0007684!7.37e-07!16;UBERON:0003220!7.37e-07!16;UBERON:0004208!7.37e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.36e-11;10!UBERON:0009773;4.36e-11;10!UBERON:0001231;4.36e-11;10!UBERON:0004810;4.36e-11;10!UBERON:0001851;2.49e-10;15!UBERON:0006555;5.38e-10;15!UBERON:0004819;5.38e-10;15!UBERON:0001285;5.38e-10;15!UBERON:0007684;5.38e-10;15!UBERON:0002113;3.68e-09;24!UBERON:0011143;3.68e-09;24!UBERON:0001264;1.05e-08;10!UBERON:0001225;1.30e-08;12!UBERON:0008987;1.30e-08;12!UBERON:0000489;5.59e-07;29 | |||
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| |||
|short_description=p4@KRT8 | |||
}} |
Revision as of 23:14, 10 September 2013
Short description: | p4@KRT8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_KRT8_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000552150, uc009zmk.1_5end |
EntrezGene: | KRT8 |
HGNC: | 6446 |
UniProt: | F8VXB4Q7L4M3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 8.66e-27 | 19 |
epithelial cell | 1.68e-26 | 253 |
kidney tubule cell | 3.09e-11 | 10 |
nephron tubule epithelial cell | 3.09e-11 | 10 |
epithelial cell of nephron | 4.04e-10 | 15 |
kidney cell | 4.06e-10 | 17 |
kidney epithelial cell | 4.06e-10 | 17 |
kidney cortical cell | 1.06e-08 | 12 |
renal cortical epithelial cell | 1.06e-08 | 12 |
lining cell | 2.93e-07 | 58 |
barrier cell | 2.93e-07 | 58 |
squamous epithelial cell | 4.72e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 3.42e-13 | 101 |
nephron tubule epithelium | 3.09e-11 | 10 |
cortex | 2.09e-10 | 15 |
nephron epithelium | 4.04e-10 | 15 |
renal tubule | 4.04e-10 | 15 |
nephron tubule | 4.04e-10 | 15 |
nephron | 4.04e-10 | 15 |
uriniferous tubule | 4.04e-10 | 15 |
nephrogenic mesenchyme | 4.04e-10 | 15 |
trunk | 1.89e-09 | 199 |
excretory tube | 2.56e-09 | 16 |
kidney epithelium | 2.56e-09 | 16 |
pancreas | 5.81e-09 | 10 |
cortex of kidney | 1.06e-08 | 12 |
renal parenchyma | 1.06e-08 | 12 |
kidney | 3.26e-08 | 26 |
kidney mesenchyme | 3.26e-08 | 26 |
upper urinary tract | 3.26e-08 | 26 |
kidney rudiment | 3.26e-08 | 26 |
kidney field | 3.26e-08 | 26 |
abdomen element | 3.27e-08 | 54 |
abdominal segment element | 3.27e-08 | 54 |
extraembryonic membrane | 7.21e-08 | 14 |
membranous layer | 7.21e-08 | 14 |
subdivision of trunk | 8.80e-08 | 112 |
urinary system structure | 1.89e-07 | 47 |
renal system | 3.42e-07 | 48 |
abdominal segment of trunk | 7.95e-07 | 60 |
abdomen | 7.95e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.08e-18 | 106 |
cancer | 3.72e-16 | 235 |
disease of cellular proliferation | 4.44e-16 | 239 |
cell type cancer | 5.28e-16 | 143 |
adenocarcinoma | 6.89e-16 | 25 |
endocrine gland cancer | 2.36e-09 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.