FFCP PHASE1:Hg19::chr2:177001290..177001315,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3232|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5137|TSSclassifier=S|UniProt=|association_with_transcript=-24bp_to_ENST00000459979,uc002ukr.2_5end|description=CAGE_peak_1_at_HOXD3_5end|id=chr2:177001290..177001315,+|ontology_enrichment_celltype=CL:0002620!1.24e-07!23;CL:1000449!4.69e-07!16|ontology_enrichment_celltype_v019=CL:1000449;1.90e-09;15!CL:0002139;4.34e-08;24!CL:1000497;6.50e-08;17!CL:0002518;6.50e-08;17!CL:0002681;1.70e-07;12!CL:0002584;1.70e-07;12!CL:0002078;3.09e-07;45!CL:1000507;4.39e-07;10!CL:1000494;4.39e-07;10|ontology_enrichment_celltype_v019_2=CL:0002078,2.73e-10,45;CL:1000449,1.45e-09,15;CL:0002139,3.03e-08,24;CL:1000497,5.15e-08,17;CL:0002518,5.15e-08,17;CL:0002681,1.26e-07,12;CL:0002584,1.26e-07,12;CL:0000115,2.15e-07,36;CL:1000507,4.03e-07,10;CL:1000494,4.03e-07,10|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000489!1.49e-11!32;UBERON:0004876!5.51e-10!20;UBERON:0002113!2.80e-09!27;UBERON:0003918!2.80e-09!27;UBERON:0005095!2.80e-09!27;UBERON:0007687!2.80e-09!27;UBERON:0003887!7.38e-09!21;UBERON:0000080!1.32e-08!18;UBERON:0002120!1.32e-08!18;UBERON:0004875!1.32e-08!18;UBERON:0005721!1.32e-08!18;UBERON:0005754!1.32e-08!18;UBERON:0007297!1.32e-08!18;UBERON:0003064!1.65e-08!37;UBERON:0001008!7.13e-08!45;UBERON:0006555!7.91e-08!17;UBERON:0005103!7.91e-08!17;UBERON:0000083!7.91e-08!17;UBERON:0009201!7.91e-08!17;UBERON:0004819!7.91e-08!17;UBERON:0006553!7.91e-08!17;UBERON:0003074!7.91e-08!17;UBERON:0003060!7.91e-08!17;UBERON:0003886!1.25e-07!63;UBERON:0006554!2.51e-07!44;UBERON:0003133!2.91e-07!48;UBERON:0002097!3.73e-07!40;UBERON:0004211!4.69e-07!16;UBERON:0001285!4.69e-07!16;UBERON:0007684!4.69e-07!16;UBERON:0003220!4.69e-07!16;UBERON:0004208!4.69e-07!16;UBERON:0005156!5.37e-07!59;UBERON:0000990!5.37e-07!59;UBERON:0000058!6.12e-07!26;UBERON:0002553!6.80e-07!70|ontology_enrichment_uberon_v019=UBERON:0000489;1.06e-12;29!UBERON:0002113;3.81e-10;24!UBERON:0011143;3.81e-10;24!UBERON:0006555;1.90e-09;15!UBERON:0004819;1.90e-09;15!UBERON:0001285;1.90e-09;15!UBERON:0007684;1.90e-09;15!UBERON:0006554;4.73e-08;30!UBERON:0001008;4.73e-08;30!UBERON:0001225;1.70e-07;12!UBERON:0008987;1.70e-07;12!UBERON:0001473;3.43e-07;8!UBERON:0004536;3.43e-07;8!UBERON:0006558;3.43e-07;8!UBERON:0004211;4.39e-07;10!UBERON:0009773;4.39e-07;10!UBERON:0001231;4.39e-07;10!UBERON:0004810;4.39e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0000489,6.34e-15,31;UBERON:0002113,2.12e-12,26;UBERON:0003918,2.12e-12,26;UBERON:0011143,2.12e-12,26;UBERON:0005095,2.12e-12,26;UBERON:0007687,2.12e-12,26;UBERON:0006555,1.12e-10,16;UBERON:0004819,1.12e-10,16;UBERON:0004876,6.55e-10,11;UBERON:0004211,1.45e-09,15;UBERON:0009773,1.45e-09,15;UBERON:0001231,1.45e-09,15;UBERON:0001285,1.45e-09,15;UBERON:0007684,1.45e-09,15;UBERON:0004208,1.45e-09,15;UBERON:0005172,1.41e-08,54;UBERON:0005173,1.41e-08,54;UBERON:0002417,2.11e-08,60;UBERON:0000916,2.11e-08,60;UBERON:0003887,2.27e-08,12;UBERON:0000080,6.85e-08,9;UBERON:0002120,6.85e-08,9;UBERON:0004875,6.85e-08,9;UBERON:0005721,6.85e-08,9;UBERON:0005754,6.85e-08,9;UBERON:0007297,6.85e-08,9;UBERON:0001225,1.26e-07,12;UBERON:0008987,1.26e-07,12;UBERON:0009569,1.58e-07,112;UBERON:0001473,3.26e-07,8;UBERON:0004536,3.26e-07,8;UBERON:0006558,3.26e-07,8;UBERON:0004810,4.03e-07,10;UBERON:0001008,8.13e-07,48;UBERON:0005103,9.77e-07,8;UBERON:0000083,9.77e-07,8;UBERON:0009201,9.77e-07,8;UBERON:0006553,9.77e-07,8;UBERON:0003074,9.77e-07,8;UBERON:0003060,9.77e-07,8|phase1_expression=4.54195948176392,3.42560838225573,0.140954404095971,3.00219895059391,0,2.61701557230111,0,0,0,0.245733936501509,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.619264493264304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0.722878304769133,1.50401373190767,1.73815822752988,0,1.94653948121054,0,0,0,7.53129684111848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,12.4040044401278,7.82685777910763,11.3805008339988,2.81980521976403,3.80136052859256,5.85748938115607,2.20597848207521,1.62028389576352,5.89378206674926,6.96041055141126,2.92789849256638,3.06633274931766,4.74632829784064,1.46561395144326,0,0,0,0.496971951695318,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0.448346041655403,1.64408298101271,1.13311061057692,0.702254033511242,0,0,0,0,0,6.37112953356618,5.03032699271367,0,0,0,0,0,0,0,21.7061459183523,4.27114777637135,1.48352330811693,2.40072876867522,0.824420233907511,10.8209026819164,2.23340227597908,7.59493495085698,3.31285817548075,9.59248342127635,2.11714766877288,0,10.6502877754984,1.91428986632517,0.339121184620975,0,0,0,0,0,0.348581828608555,0,0,0,7.8224766164908,1.28648187638577,5.52539685409922,0.928735856063958,0.72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2,11.8343603723352,0.849635573439084,2.6315497034359,3.93193116638821,0,0,0.705789743431384,0,2.92134555298607,0.458729283404541,0,5.20646155237509,0,0,3.1741610430924,3.71995018166751,9.24351257262837,4.75889218336168,0,0,0,0,0,0.0918948995348449,0,5.380287573495,2.94760543171796,0,0,2.34557380091079,3.33290204049236,0.0645889098360061,1.05527014302958,0,0.190941474834495,5.05292972395548,0.653150243690884,0.684466602170562,0.5388164241167,1.00411087549747,1.33064142618405,0.0814032686109745,1.49418284228802,0,0.988077223172456,2.34640942403454,30.3158781573509,22.3792898073656,13.9808922578958,3.42165449104745,0|short_description=p1@HOXD3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3232 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5137 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-24bp_to_ENST00000459979,uc002ukr.2_5end | |||
|description=CAGE_peak_1_at_HOXD3_5end | |||
|id=chr2:177001290..177001315,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.24e-07!23;CL:1000449!4.69e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.90e-09;15!CL:0002139;4.34e-08;24!CL:1000497;6.50e-08;17!CL:0002518;6.50e-08;17!CL:0002681;1.70e-07;12!CL:0002584;1.70e-07;12!CL:0002078;3.09e-07;45!CL:1000507;4.39e-07;10!CL:1000494;4.39e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002078,2.73e-10,45;CL:1000449,1.45e-09,15;CL:0002139,3.03e-08,24;CL:1000497,5.15e-08,17;CL:0002518,5.15e-08,17;CL:0002681,1.26e-07,12;CL:0002584,1.26e-07,12;CL:0000115,2.15e-07,36;CL:1000507,4.03e-07,10;CL:1000494,4.03e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!1.49e-11!32;UBERON:0004876!5.51e-10!20;UBERON:0002113!2.80e-09!27;UBERON:0003918!2.80e-09!27;UBERON:0005095!2.80e-09!27;UBERON:0007687!2.80e-09!27;UBERON:0003887!7.38e-09!21;UBERON:0000080!1.32e-08!18;UBERON:0002120!1.32e-08!18;UBERON:0004875!1.32e-08!18;UBERON:0005721!1.32e-08!18;UBERON:0005754!1.32e-08!18;UBERON:0007297!1.32e-08!18;UBERON:0003064!1.65e-08!37;UBERON:0001008!7.13e-08!45;UBERON:0006555!7.91e-08!17;UBERON:0005103!7.91e-08!17;UBERON:0000083!7.91e-08!17;UBERON:0009201!7.91e-08!17;UBERON:0004819!7.91e-08!17;UBERON:0006553!7.91e-08!17;UBERON:0003074!7.91e-08!17;UBERON:0003060!7.91e-08!17;UBERON:0003886!1.25e-07!63;UBERON:0006554!2.51e-07!44;UBERON:0003133!2.91e-07!48;UBERON:0002097!3.73e-07!40;UBERON:0004211!4.69e-07!16;UBERON:0001285!4.69e-07!16;UBERON:0007684!4.69e-07!16;UBERON:0003220!4.69e-07!16;UBERON:0004208!4.69e-07!16;UBERON:0005156!5.37e-07!59;UBERON:0000990!5.37e-07!59;UBERON:0000058!6.12e-07!26;UBERON:0002553!6.80e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;1.06e-12;29!UBERON:0002113;3.81e-10;24!UBERON:0011143;3.81e-10;24!UBERON:0006555;1.90e-09;15!UBERON:0004819;1.90e-09;15!UBERON:0001285;1.90e-09;15!UBERON:0007684;1.90e-09;15!UBERON:0006554;4.73e-08;30!UBERON:0001008;4.73e-08;30!UBERON:0001225;1.70e-07;12!UBERON:0008987;1.70e-07;12!UBERON:0001473;3.43e-07;8!UBERON:0004536;3.43e-07;8!UBERON:0006558;3.43e-07;8!UBERON:0004211;4.39e-07;10!UBERON:0009773;4.39e-07;10!UBERON:0001231;4.39e-07;10!UBERON:0004810;4.39e-07;10 | |||
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| |||
|short_description=p1@HOXD3 | |||
}} |
Revision as of 14:50, 12 September 2013
Short description: | p1@HOXD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HOXD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -24bp_to_ENST00000459979, uc002ukr.2_5end |
EntrezGene: | HOXD3 |
HGNC: | 5137 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meso-epithelial cell | 2.73e-10 | 45 |
epithelial cell of nephron | 1.45e-09 | 15 |
endothelial cell of vascular tree | 3.03e-08 | 24 |
kidney cell | 5.15e-08 | 17 |
kidney epithelial cell | 5.15e-08 | 17 |
kidney cortical cell | 1.26e-07 | 12 |
renal cortical epithelial cell | 1.26e-07 | 12 |
endothelial cell | 2.15e-07 | 36 |
kidney tubule cell | 4.03e-07 | 10 |
nephron tubule epithelial cell | 4.03e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.