FFCP PHASE1:Hg19::chr5:131280548..131280574,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-63bp_to_ENST00000425320_5end|coexpression_cluster_id=C314|description=CAGE_peak_1_at_ENST00000425320_5end|id=chr5:131280548..131280574,-|ontology_enrichment_celltype=CL:0002057!4.68e-79!42;CL:0002009!9.16e-79!65;CL:0002194!3.59e-75!63;CL:0000576!3.59e-75!63;CL:0000040!3.59e-75!63;CL:0000559!3.59e-75!63;CL:0000860!7.02e-73!45;CL:0000557!8.00e-71!71;CL:0000766!1.17e-70!76;CL:0000839!3.52e-66!70;CL:0000763!1.63e-52!112;CL:0000049!1.63e-52!112;CL:0000738!1.78e-48!140;CL:0002087!2.41e-44!119;CL:0002031!2.42e-40!124;CL:0000037!1.95e-37!172;CL:0000566!1.95e-37!172;CL:0002032!1.63e-35!165;CL:0000837!1.63e-35!165;CL:0000988!2.31e-34!182;CL:0002393!5.13e-14!9;CL:0002397!5.13e-14!9;CL:0000990!3.96e-11!8;CL:0000840!1.80e-09!5;CL:0001029!1.80e-09!5;CL:0000134!1.99e-09!358;CL:0002320!6.18e-09!365;CL:0000451!7.18e-09!10;CL:0000235!1.28e-07!10;CL:0000875!1.46e-07!3;CL:0002396!1.46e-07!3;CL:0000219!3.09e-07!390|ontology_enrichment_celltype_v019=CL:0000473;3.19e-97;39!CL:0000234;3.19e-97;39!CL:0000860;1.30e-95;33!CL:0002057;1.30e-95;33!CL:0000576;5.75e-63;48!CL:0000766;1.63e-48;69!CL:0000235;1.17e-24;6!CL:0000763;5.43e-23;100!CL:0002087;3.69e-16;104!CL:0000738;1.39e-15;136!CL:0000875;2.92e-13;3!CL:0002396;2.92e-13;3!CL:0000988;1.34e-07;177!CL:0000219;1.47e-07;193!CL:0000840;2.35e-07;5|ontology_enrichment_celltype_v019_2=CL:0000473,1.93e-144,48;CL:0000234,1.93e-144,48;CL:0002194,1.13e-132,59;CL:0000576,1.13e-132,59;CL:0000040,1.13e-132,59;CL:0000559,1.13e-132,59;CL:0002009,4.18e-128,61;CL:0000860,1.73e-120,42;CL:0002057,1.73e-120,42;CL:0000839,6.99e-118,66;CL:0000766,2.01e-117,72;CL:0000557,5.12e-116,67;CL:0000763,1.16e-75,108;CL:0000049,1.16e-75,108;CL:0002087,2.71e-64,115;CL:0002031,2.90e-61,120;CL:0000738,2.45e-58,136;CL:0002032,6.39e-48,161;CL:0000837,6.39e-48,161;CL:0000037,1.48e-45,168;CL:0000988,8.72e-43,177;CL:0000235,1.51e-24,6;CL:0000134,8.80e-17,354;CL:0002320,2.84e-16,361;CL:0002393,7.68e-16,9;CL:0002397,7.68e-16,9;CL:0000219,1.76e-14,386;CL:0000875,2.86e-13,3;CL:0002396,2.86e-13,3;CL:0000048,2.75e-12,427;CL:0000723,5.52e-12,433;CL:0000034,1.36e-11,441;CL:0000840,2.30e-07,5;CL:0001029,2.30e-07,5|ontology_enrichment_development_v019=CL:0002057;2.12e-87;42!CL:0000049;7.70e-24;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.24e-65!102;UBERON:0003061!1.24e-65!102;UBERON:0002193!1.96e-62!112;UBERON:0002371!3.98e-61!80;UBERON:0001474!8.77e-56!86;UBERON:0002405!4.42e-48!115;UBERON:0004765!4.23e-47!101;UBERON:0001434!4.23e-47!101;UBERON:0003081!9.25e-28!216;UBERON:0002204!2.18e-23!167;UBERON:0000926!5.48e-11!448;UBERON:0004120!5.48e-11!448;UBERON:0006603!5.48e-11!448;UBERON:0002384!8.69e-09!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.05e-101,76;UBERON:0001474,1.95e-93,82;UBERON:0004765,1.96e-84,90;UBERON:0002405,1.88e-81,93;UBERON:0002390,1.16e-80,98;UBERON:0003061,1.16e-80,98;UBERON:0001434,3.49e-75,100;UBERON:0002193,1.97e-72,108;UBERON:0002204,1.41e-41,167;UBERON:0003081,1.95e-34,203;UBERON:0000926,4.42e-20,315;UBERON:0004120,4.42e-20,315;UBERON:0006603,4.42e-20,315;UBERON:0002384,1.40e-15,371;UBERON:0000923,5.68e-07,560;UBERON:0010316,5.68e-07,560;UBERON:0005291,5.68e-07,560;UBERON:0006598,5.68e-07,560;UBERON:0010317,5.68e-07,560;UBERON:0002532,5.68e-07,560;UBERON:0002050,7.47e-07,564|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,1.15148819429164,1.08371286321253,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,1.89017710413434,1.88937971844405,0.970336244751265,9.76201955003875,5.34518254428373,6.50383378879718,3.45230870786581,1.7931249457037,2.12834006899727,6.89491361473237,5.16387746867061,5.41705946377367,5.27078550719293,9.27880910196676,8.09004544002305,7.65209730927256,8.34415470397843,5.11469700639233,1.31940520074686,1.39624560335142,0.426224750532694,5.80418477257168,2.8369261234557,1.24564449799115,3.26623264833766,3.12889751052121,2.38907729175628,2.42159801053347,4.78760926783834,1.89877432464531,1.90129757680748,2.76385589954557,1.04829322754188,1.90958672949042,1.05123824989054,0.64290234678832,5.41524213108372,6.56425034756997,1.27864907635244,0,0,0,0,0,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,14.2800853208061,18.1094926791238,8.3763515126885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21595305478658,20.5923753322529,4.60756603095058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-63bp_to_ENST00000425320_5end | |||
|coexpression_cluster_id=C314 | |||
|description=CAGE_peak_1_at_ENST00000425320_5end | |||
|id=chr5:131280548..131280574,- | |||
|ontology_enrichment_celltype=CL:0002057!4.68e-79!42;CL:0002009!9.16e-79!65;CL:0002194!3.59e-75!63;CL:0000576!3.59e-75!63;CL:0000040!3.59e-75!63;CL:0000559!3.59e-75!63;CL:0000860!7.02e-73!45;CL:0000557!8.00e-71!71;CL:0000766!1.17e-70!76;CL:0000839!3.52e-66!70;CL:0000763!1.63e-52!112;CL:0000049!1.63e-52!112;CL:0000738!1.78e-48!140;CL:0002087!2.41e-44!119;CL:0002031!2.42e-40!124;CL:0000037!1.95e-37!172;CL:0000566!1.95e-37!172;CL:0002032!1.63e-35!165;CL:0000837!1.63e-35!165;CL:0000988!2.31e-34!182;CL:0002393!5.13e-14!9;CL:0002397!5.13e-14!9;CL:0000990!3.96e-11!8;CL:0000840!1.80e-09!5;CL:0001029!1.80e-09!5;CL:0000134!1.99e-09!358;CL:0002320!6.18e-09!365;CL:0000451!7.18e-09!10;CL:0000235!1.28e-07!10;CL:0000875!1.46e-07!3;CL:0002396!1.46e-07!3;CL:0000219!3.09e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.19e-97;39!CL:0000234;3.19e-97;39!CL:0000860;1.30e-95;33!CL:0002057;1.30e-95;33!CL:0000576;5.75e-63;48!CL:0000766;1.63e-48;69!CL:0000235;1.17e-24;6!CL:0000763;5.43e-23;100!CL:0002087;3.69e-16;104!CL:0000738;1.39e-15;136!CL:0000875;2.92e-13;3!CL:0002396;2.92e-13;3!CL:0000988;1.34e-07;177!CL:0000219;1.47e-07;193!CL:0000840;2.35e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.93e-144,48;CL:0000234,1.93e-144,48;CL:0002194,1.13e-132,59;CL:0000576,1.13e-132,59;CL:0000040,1.13e-132,59;CL:0000559,1.13e-132,59;CL:0002009,4.18e-128,61;CL:0000860,1.73e-120,42;CL:0002057,1.73e-120,42;CL:0000839,6.99e-118,66;CL:0000766,2.01e-117,72;CL:0000557,5.12e-116,67;CL:0000763,1.16e-75,108;CL:0000049,1.16e-75,108;CL:0002087,2.71e-64,115;CL:0002031,2.90e-61,120;CL:0000738,2.45e-58,136;CL:0002032,6.39e-48,161;CL:0000837,6.39e-48,161;CL:0000037,1.48e-45,168;CL:0000988,8.72e-43,177;CL:0000235,1.51e-24,6;CL:0000134,8.80e-17,354;CL:0002320,2.84e-16,361;CL:0002393,7.68e-16,9;CL:0002397,7.68e-16,9;CL:0000219,1.76e-14,386;CL:0000875,2.86e-13,3;CL:0002396,2.86e-13,3;CL:0000048,2.75e-12,427;CL:0000723,5.52e-12,433;CL:0000034,1.36e-11,441;CL:0000840,2.30e-07,5;CL:0001029,2.30e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;2.12e-87;42!CL:0000049;7.70e-24;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.24e-65!102;UBERON:0003061!1.24e-65!102;UBERON:0002193!1.96e-62!112;UBERON:0002371!3.98e-61!80;UBERON:0001474!8.77e-56!86;UBERON:0002405!4.42e-48!115;UBERON:0004765!4.23e-47!101;UBERON:0001434!4.23e-47!101;UBERON:0003081!9.25e-28!216;UBERON:0002204!2.18e-23!167;UBERON:0000926!5.48e-11!448;UBERON:0004120!5.48e-11!448;UBERON:0006603!5.48e-11!448;UBERON:0002384!8.69e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.05e-101,76;UBERON:0001474,1.95e-93,82;UBERON:0004765,1.96e-84,90;UBERON:0002405,1.88e-81,93;UBERON:0002390,1.16e-80,98;UBERON:0003061,1.16e-80,98;UBERON:0001434,3.49e-75,100;UBERON:0002193,1.97e-72,108;UBERON:0002204,1.41e-41,167;UBERON:0003081,1.95e-34,203;UBERON:0000926,4.42e-20,315;UBERON:0004120,4.42e-20,315;UBERON:0006603,4.42e-20,315;UBERON:0002384,1.40e-15,371;UBERON:0000923,5.68e-07,560;UBERON:0010316,5.68e-07,560;UBERON:0005291,5.68e-07,560;UBERON:0006598,5.68e-07,560;UBERON:0010317,5.68e-07,560;UBERON:0002532,5.68e-07,560;UBERON:0002050,7.47e-07,564 | |||
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|short_description=p1@ENST00000425320 | |||
}} |
Revision as of 13:03, 13 September 2013
Short description: | p1@ENST00000425320 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000425320_5end |
Coexpression cluster: | C314_Macrophage_Dendritic_Monocytederived_CD14_Esophageal_Mast_Keratinocyte |
Association with transcript: | -63bp_to_ENST00000425320_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.05e-101 | 76 |
bone element | 1.95e-93 | 82 |
skeletal element | 1.96e-84 | 90 |
immune system | 1.88e-81 | 93 |
hematopoietic system | 1.16e-80 | 98 |
blood island | 1.16e-80 | 98 |
skeletal system | 3.49e-75 | 100 |
hemolymphoid system | 1.97e-72 | 108 |
musculoskeletal system | 1.41e-41 | 167 |
lateral plate mesoderm | 1.95e-34 | 203 |
mesoderm | 4.42e-20 | 315 |
mesoderm-derived structure | 4.42e-20 | 315 |
presumptive mesoderm | 4.42e-20 | 315 |
connective tissue | 1.40e-15 | 371 |
germ layer | 5.68e-07 | 560 |
germ layer / neural crest | 5.68e-07 | 560 |
embryonic tissue | 5.68e-07 | 560 |
presumptive structure | 5.68e-07 | 560 |
germ layer / neural crest derived structure | 5.68e-07 | 560 |
epiblast (generic) | 5.68e-07 | 560 |
embryonic structure | 7.47e-07 | 564 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.