FFCP PHASE1:Hg19::chr11:102668166..102668181,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=4312 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7155 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-14bp_to_AK225495_5end | |||
|coexpression_cluster_id=C422 | |||
|description=CAGE_peak_10_at_MMP1_5end | |||
|id=chr11:102668166..102668181,- | |||
|ontology_enrichment_celltype=CL:0000359!1.35e-21!32;CL:0000192!4.65e-20!42;CL:0000514!4.65e-20!42;CL:0000187!1.09e-16!54;CL:0000183!4.94e-16!59;CL:0000055!5.63e-16!180;CL:0000680!2.04e-15!57;CL:0000056!2.04e-15!57;CL:0000355!2.04e-15!57;CL:0000393!2.82e-14!60;CL:0000211!2.82e-14!60;CL:0000222!1.72e-13!119;CL:0002139!9.02e-11!24;CL:1000413!7.79e-10!9;CL:0002539!2.81e-09!10;CL:0002594!6.19e-09!4;CL:0000220!6.51e-09!246;CL:0002494!7.89e-09!16;CL:1000306!8.34e-09!4;CL:0002547!8.34e-09!4;CL:0000071!9.78e-09!18;CL:0002546!9.78e-09!18;CL:0002321!9.79e-09!248;CL:0002595!1.11e-07!5;CL:0002592!1.32e-07!3;CL:0000057!1.37e-07!75;CL:0002551!1.96e-07!6;CL:0002371!3.00e-07!591;CL:0000548!9.72e-07!679;CL:0000004!9.72e-07!679;CL:0000255!9.72e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.07e-35;32!CL:0000192;2.97e-21;43!CL:0002595;2.75e-19;5!CL:0002592;2.30e-18;3!CL:0000569;1.70e-13;4!CL:1000306;2.93e-13;4!CL:0002547;2.93e-13;4!CL:0002594;5.26e-13;4!CL:0002593;7.87e-13;2!CL:0002494;1.50e-12;16!CL:0000393;2.70e-11;61!CL:0000211;2.70e-11;61!CL:0000187;6.91e-11;55!CL:0002539;4.27e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.29e-37,32;CL:0000192,1.52e-30,43;CL:0000514,1.52e-30,43;CL:0000187,4.02e-23,55;CL:0000680,9.54e-22,58;CL:0000056,9.54e-22,58;CL:0000355,9.54e-22,58;CL:0000393,1.66e-20,61;CL:0000211,1.66e-20,61;CL:0002595,2.76e-19,5;CL:0002592,2.45e-18,3;CL:0000222,2.38e-14,121;CL:1000306,2.28e-13,4;CL:0002547,2.28e-13,4;CL:0000569,2.38e-13,4;CL:0000011,2.38e-13,4;CL:0002594,2.59e-13,4;CL:0002593,8.36e-13,2;CL:0002494,1.80e-12,16;CL:0002321,1.10e-10,250;CL:0002539,4.37e-09,10;CL:0002379,8.98e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000514;2.97e-21;43!CL:0000011;1.70e-13;4!CL:0000355;6.01e-12;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;4.50e-07;1!DOID:2513;4.50e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,3.57e-07,1;DOID:2513,4.78e-07,1;DOID:3620,8.98e-07,1;DOID:3565,8.98e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001637!1.16e-39!42;UBERON:0003509!1.16e-39!42;UBERON:0004572!1.16e-39!42;UBERON:0000055!1.23e-30!69;UBERON:0004573!1.86e-30!33;UBERON:0004571!1.86e-30!33;UBERON:0001981!2.30e-30!60;UBERON:0007500!2.30e-30!60;UBERON:0004537!2.30e-30!60;UBERON:0006965!2.30e-30!60;UBERON:0004872!2.80e-29!84;UBERON:0002049!2.88e-25!79;UBERON:0007798!2.88e-25!79;UBERON:0004535!3.88e-22!110;UBERON:0001009!3.32e-21!113;UBERON:0004290!1.03e-18!70;UBERON:0003914!2.74e-18!118;UBERON:0000947!2.75e-18!21;UBERON:0010191!2.75e-18!21;UBERON:0000486!4.64e-18!82;UBERON:0000914!5.21e-18!83;UBERON:0002329!5.21e-18!83;UBERON:0003077!5.21e-18!83;UBERON:0003059!5.21e-18!83;UBERON:0007282!5.21e-18!83;UBERON:0009618!5.21e-18!83;UBERON:0007285!5.21e-18!83;UBERON:0001134!6.37e-14!61;UBERON:0002036!6.37e-14!61;UBERON:0003082!6.37e-14!61;UBERON:0002385!2.99e-13!63;UBERON:0001015!2.99e-13!63;UBERON:0000383!2.99e-13!63;UBERON:0000490!3.64e-13!138;UBERON:0005256!4.84e-11!143;UBERON:0004111!1.36e-10!241;UBERON:0003915!7.79e-10!9;UBERON:0004700!7.79e-10!9;UBERON:0001917!7.79e-10!9;UBERON:0004237!2.81e-09!10;UBERON:0004695!2.81e-09!10;UBERON:0002111!2.81e-09!10;UBERON:0004178!2.81e-09!10;UBERON:0001310!6.19e-09!4;UBERON:0000477!7.18e-09!286;UBERON:0000415!8.34e-09!4;UBERON:0007240!8.34e-09!4;UBERON:0005742!8.34e-09!4;UBERON:0005734!8.34e-09!4;UBERON:0004664!8.34e-09!4;UBERON:0004663!8.34e-09!4;UBERON:0001986!9.78e-09!18;UBERON:0004638!9.78e-09!18;UBERON:0004852!9.78e-09!18;UBERON:0000483!1.49e-08!309;UBERON:0000119!2.50e-08!312;UBERON:0003834!1.11e-07!5;UBERON:0001533!1.11e-07!5;UBERON:0001621!1.32e-07!3;UBERON:0000926!1.47e-07!448;UBERON:0004120!1.47e-07!448;UBERON:0006603!1.47e-07!448;UBERON:0000025!3.28e-07!194;UBERON:0002067!6.50e-07!9;UBERON:0004016!6.50e-07!9;UBERON:0010083!6.50e-07!9;UBERON:0000487!9.37e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;9.13e-36;33!UBERON:0004571;9.13e-36;33!UBERON:0001637;1.56e-34;42!UBERON:0003509;1.56e-34;42!UBERON:0004572;1.56e-34;42!UBERON:0000055;1.48e-19;65!UBERON:0003834;2.75e-19;5!UBERON:0001533;2.75e-19;5!UBERON:0003498;2.30e-18;3!UBERON:0005985;2.30e-18;3!UBERON:0001621;2.30e-18;3!UBERON:0002049;3.93e-17;75!UBERON:0007798;3.93e-17;75!UBERON:0007500;4.90e-16;56!UBERON:0001981;4.90e-16;56!UBERON:0004537;4.90e-16;56!UBERON:0000947;6.90e-16;21!UBERON:0010191;6.90e-16;21!UBERON:0003914;5.19e-14;74!UBERON:0003513;8.16e-14;7!UBERON:0004797;2.93e-13;4!UBERON:0000415;2.93e-13;4!UBERON:0007240;2.93e-13;4!UBERON:0005742;2.93e-13;4!UBERON:0005734;2.93e-13;4!UBERON:0004664;2.93e-13;4!UBERON:0004663;2.93e-13;4!UBERON:0001310;5.26e-13;4!UBERON:0002456;7.87e-13;2!UBERON:0004237;4.27e-09;10!UBERON:0004695;4.27e-09;10!UBERON:0002111;4.27e-09;10!UBERON:0004178;4.27e-09;10!UBERON:0000948;5.80e-09;22!UBERON:0001009;4.30e-08;112!UBERON:0007100;8.17e-08;25!UBERON:0004535;1.87e-07;109!UBERON:0000025;8.22e-07;93 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,4.10e-45,42;UBERON:0003509,4.10e-45,42;UBERON:0004572,4.10e-45,42;UBERON:0004573,3.60e-41,33;UBERON:0004571,3.60e-41,33;UBERON:0000055,1.14e-35,68;UBERON:0007500,2.43e-34,59;UBERON:0001981,2.43e-34,59;UBERON:0004537,2.43e-34,59;UBERON:0006965,2.43e-34,59;UBERON:0004872,2.12e-31,83;UBERON:0002049,1.74e-30,78;UBERON:0007798,1.74e-30,78;UBERON:0004535,2.76e-27,109;UBERON:0001009,2.06e-26,112;UBERON:0003914,7.81e-21,117;UBERON:0001134,4.04e-20,62;UBERON:0002036,4.04e-20,62;UBERON:0003082,4.04e-20,62;UBERON:0002329,1.88e-19,71;UBERON:0003059,1.88e-19,71;UBERON:0007282,1.88e-19,71;UBERON:0004290,1.88e-19,71;UBERON:0009618,1.88e-19,71;UBERON:0002385,2.20e-19,64;UBERON:0001015,2.20e-19,64;UBERON:0000383,2.20e-19,64;UBERON:0003834,2.76e-19,5;UBERON:0001533,2.76e-19,5;UBERON:0003077,3.93e-19,72;UBERON:0007285,3.93e-19,72;UBERON:0007524,8.07e-19,73;UBERON:0001621,2.45e-18,3;UBERON:0007503,2.24e-17,78;UBERON:0000486,4.15e-16,83;UBERON:0000947,5.99e-16,21;UBERON:0010191,5.99e-16,21;UBERON:0003513,8.18e-14,7;UBERON:0000415,2.28e-13,4;UBERON:0007240,2.28e-13,4;UBERON:0005742,2.28e-13,4;UBERON:0005734,2.28e-13,4;UBERON:0004664,2.28e-13,4;UBERON:0004663,2.28e-13,4;UBERON:0001310,2.59e-13,4;UBERON:0002456,8.36e-13,2;UBERON:0000490,2.68e-12,148;UBERON:0003498,3.33e-11,5;UBERON:0005985,3.33e-11,5;UBERON:0003081,6.04e-11,203;UBERON:0000025,1.09e-10,192;UBERON:0005256,8.40e-10,122;UBERON:0004111,1.90e-09,240;UBERON:0004237,4.37e-09,10;UBERON:0004695,4.37e-09,10;UBERON:0002111,4.37e-09,10;UBERON:0004178,4.37e-09,10;UBERON:0000926,2.73e-08,315;UBERON:0004120,2.73e-08,315;UBERON:0006603,2.73e-08,315;UBERON:0000948,4.10e-08,24;UBERON:0005498,4.10e-08,24;UBERON:0004140,4.10e-08,24;UBERON:0009881,4.10e-08,24;UBERON:0004141,4.10e-08,24;UBERON:0003084,4.10e-08,24;UBERON:0007005,4.10e-08,24;UBERON:0004139,4.10e-08,24;UBERON:0004291,4.10e-08,24;UBERON:0000483,7.45e-08,306;UBERON:0004797,7.74e-08,7;UBERON:0000119,1.00e-07,309;UBERON:0007100,3.82e-07,27;UBERON:0002204,4.36e-07,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01697543935533,0,0.730310090387373,1.95173119516203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5905718941022,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,2.58070378531837,0.347140501607594,0.56530794192401,0.838998872419812,0.550236083880135,0.835979866147242,0,1.42306505074684,1.67360306382335,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,1.28241220751285,0,0,0,0,1.8994576749687,0.397227542439656,2.58152958673932,2.12801029319014,0,0,0.98667019366864,0,0.134710672069688,0.163461903113459,0,0,0,0.624320153660641,0.570471821544449,0,0.469737994575059,0.323745888736263,0.140450806702248,0.204154171254893,0.491337269247072,0.309977343527296,0,0,0,0,0,0.125118519871964,0.554128230968366,0,0,0,0,0,0,0,0.300091096084402,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721832238805369,0,0,0,0,0,0,0,1.87467667973554,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65147236858747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.60818530127658,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0.462629081407967,0.177561725313127,0.657017248110473,0,0.581051892299796,0,0,0.184161977871793,0,0.182091168006717,0,0,0,0,0,0,0,0.510281115829547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.170453254832202,0,0,0.192190067365106,0,0.2023155617111,0,0.31481234683064,2.0911118104818,0.924100740528266,1.59691809095107,0,3.33583594387056,0,0,0,0,0,0,0.318203247925937,0,0,0,0,2.42618977887979,6.34041284692033,5.89761838734574,0,3.1682753652067,3.16950440270266,0.136499911407986,0.282810863907425,0,0,5.97095077717098,6.57676327880644,0,0,0.608731130888112,2.78841148289775,1.97186921772569,0,0,1.78335525740625,1.06428319221179,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17727711363265,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58971689362392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0.979762080328227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.758245587708239,0,1.6468607378872,0,0,0.149254802886874,0.233713309847224,0,0,0,0,1.14420034198462,0,2.17612080815893,7.3927574994817,0.318593534327405,0.899606224327209,0.155262956876259,0,0,0.521745061811734,0,0,0,2.54588122883583,0.214821114084977,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422624246717254,0,0,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,2.78412259767164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24082554265728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12131862580613,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0,0,0.449126010532934,0,0,0,0,0,0 | |||
|short_description=p10@MMP1 | |||
}} |
Revision as of 10:03, 11 January 2014
Short description: | p10@MMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_10_at_MMP1_5end |
Coexpression cluster: | C422_mesenchymal_Smooth_Fibroblast_papillary_Endothelial_fibrous_osteosarcoma |
Association with transcript: | -14bp_to_AK225495_5end |
EntrezGene: | MMP1 |
HGNC: | 7155 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.29e-37 | 32 |
smooth muscle cell | 1.52e-30 | 43 |
smooth muscle myoblast | 1.52e-30 | 43 |
muscle cell | 4.02e-23 | 55 |
muscle precursor cell | 9.54e-22 | 58 |
myoblast | 9.54e-22 | 58 |
multi-potent skeletal muscle stem cell | 9.54e-22 | 58 |
electrically responsive cell | 1.66e-20 | 61 |
electrically active cell | 1.66e-20 | 61 |
smooth muscle cell of the subclavian artery | 2.76e-19 | 5 |
smooth muscle cell of the coronary artery | 2.45e-18 | 3 |
mesodermal cell | 2.38e-14 | 121 |
fibroblast of tunica adventitia of artery | 2.28e-13 | 4 |
fibroblast of the aortic adventitia | 2.28e-13 | 4 |
cardiac mesenchymal cell | 2.38e-13 | 4 |
migratory trunk neural crest cell | 2.38e-13 | 4 |
smooth muscle cell of the umbilical artery | 2.59e-13 | 4 |
smooth muscle cell of the internal thoracic artery | 8.36e-13 | 2 |
cardiocyte | 1.80e-12 | 16 |
embryonic cell | 1.10e-10 | 250 |
aortic smooth muscle cell | 4.37e-09 | 10 |
meningothelial cell | 8.98e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 3.57e-07 | 1 |
basal cell carcinoma | 4.78e-07 | 1 |
central nervous system cancer | 8.98e-07 | 1 |