FFCP PHASE1:Hg19::chr11:56949421..56949438,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=219527 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32324 | |||
|TSSclassifier=strong | |||
|UniProt=Q6ZSA7 | |||
|association_with_transcript=42bp_to_BC150572_5end | |||
|description=CAGE_peak_1_at_LRRC55_5end | |||
|id=chr11:56949421..56949438,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002262;1.10e-15;2!CL:1000398;1.10e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,1.15e-15,2;CL:1000398,1.15e-15,2 | |||
|ontology_enrichment_development_v019=UBERON:0006241;4.01e-23;3!UBERON:0003057;4.01e-23;3!UBERON:0001045;1.47e-08;1!UBERON:0006298;1.47e-08;1!UBERON:0003124;1.47e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.62e-32!115;UBERON:0001049!6.27e-19!57;UBERON:0005068!6.27e-19!57;UBERON:0006241!6.27e-19!57;UBERON:0007135!6.27e-19!57;UBERON:0001017!2.93e-16!82;UBERON:0002619!2.69e-15!22;UBERON:0005743!4.18e-15!86;UBERON:0001950!5.95e-15!20;UBERON:0000955!6.37e-15!69;UBERON:0006238!6.37e-15!69;UBERON:0001893!1.96e-14!34;UBERON:0001869!5.93e-14!32;UBERON:0000073!7.21e-14!94;UBERON:0001016!7.21e-14!94;UBERON:0002791!2.12e-13!33;UBERON:0002616!2.57e-13!59;UBERON:0000956!4.41e-13!25;UBERON:0000203!4.41e-13!25;UBERON:0003075!4.85e-13!86;UBERON:0007284!4.85e-13!86;UBERON:0002780!8.31e-13!41;UBERON:0001890!8.31e-13!41;UBERON:0006240!8.31e-13!41;UBERON:0003080!2.18e-12!42;UBERON:0002346!4.19e-12!90;UBERON:0000153!8.75e-12!129;UBERON:0007811!8.75e-12!129;UBERON:0002020!1.96e-11!34;UBERON:0003528!1.96e-11!34;UBERON:0000477!3.49e-11!286;UBERON:0004111!5.39e-11!241;UBERON:0000025!1.07e-09!194;UBERON:0000033!1.73e-09!123;UBERON:0004121!8.37e-09!169;UBERON:0000481!1.76e-08!347;UBERON:0000924!2.24e-08!173;UBERON:0006601!2.24e-08!173;UBERON:0003076!4.26e-08!15;UBERON:0003057!4.26e-08!15;UBERON:0002240!9.04e-08!3;UBERON:0000475!1.11e-07!365;UBERON:0000064!1.88e-07!219;UBERON:0001896!4.31e-07!3;UBERON:0005290!4.31e-07!3;UBERON:0010096!4.31e-07!3;UBERON:0003056!4.33e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;4.01e-23;3!UBERON:0005174;4.01e-23;3!UBERON:0001137;4.01e-23;3!UBERON:0001281;1.10e-15;2!UBERON:0003497;1.10e-15;2!UBERON:0003909;1.10e-15;2!UBERON:0003835;1.10e-15;2!UBERON:0002114;3.19e-11;2!UBERON:0001280;9.12e-11;3!UBERON:0004647;9.12e-11;3!UBERON:0001896;1.39e-10;3!UBERON:0005290;1.39e-10;3!UBERON:0000922;2.37e-10;49!UBERON:0000029;3.31e-09;1!UBERON:0001154;1.47e-08;1!UBERON:0001736;1.47e-08;1!UBERON:0001153;1.47e-08;1!UBERON:0009854;1.47e-08;1!UBERON:0002465;2.66e-07;10!UBERON:0002108;4.58e-07;4!UBERON:0000160;8.53e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,3.87e-23,3;UBERON:0005174,3.87e-23,3;UBERON:0001137,3.87e-23,3;UBERON:0001281,1.15e-15,2;UBERON:0003497,1.15e-15,2;UBERON:0003909,1.15e-15,2;UBERON:0003835,1.15e-15,2;UBERON:0003076,4.41e-12,15;UBERON:0003057,4.41e-12,15;UBERON:0001049,1.90e-11,56;UBERON:0005068,1.90e-11,56;UBERON:0006241,1.90e-11,56;UBERON:0007135,1.90e-11,56;UBERON:0002114,3.44e-11,2;UBERON:0001280,9.35e-11,3;UBERON:0004647,9.35e-11,3;UBERON:0005171,9.35e-11,3;UBERON:0001896,2.26e-10,3;UBERON:0005290,2.26e-10,3;UBERON:0010096,2.26e-10,3;UBERON:0011216,2.11e-09,223;UBERON:0000029,3.31e-09,1;UBERON:0001017,5.48e-09,81;UBERON:0001736,1.05e-08,1;UBERON:0006298,1.05e-08,1;UBERON:0001154,1.13e-08,1;UBERON:0001153,1.13e-08,1;UBERON:0001045,1.13e-08,1;UBERON:0001016,6.33e-08,89;UBERON:0004111,1.46e-07,240;UBERON:0003075,2.37e-07,82;UBERON:0007284,2.37e-07,82;UBERON:0002465,2.58e-07,10;UBERON:0007023,3.77e-07,114;UBERON:0002108,4.79e-07,4;UBERON:0002346,6.12e-07,86;UBERON:0000160,7.59e-07,17 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21446636387394,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,1.29929802984966,0.925971025153221,2.66355813128438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.22001485746285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,1.65770349318689,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,3.99227596002388,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0,0.591095237907095,0.219385397153973,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0,0,0,0,0,0.134802265961354,0.802577647298789,0,0,0,0,0,8.46935012340647,6.73360075587078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.484945082442097,0,0,0,0.596143835108969,0.189932387867636,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0.399358000997982,0,0,0.604651252380536,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0,0.472091293214983,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0.293104467356165,2.65013777824443,0,0,0,0,0,0.471612915298998,0.828478110694391,11.4118185016749,0,0,0.638341257770182,0,0,0,0,0,0,0,0.1251909307065,1.14681839138014,0.443716206147409,1.05563885000352,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.615349092722265,2.52071696221718,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.135075169236789,0,0.413373593002368,0.0634158101939068,8.75159694429151,0.548257766857182,0,0,0.255524855279191,0,2.35398605553177,0,0,1.1531308121143,0,0,0.679697329768317,0.197318320688547,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,1.29068207646083,0,0,0,0,0,0,0,0,0,0,0.205325613712494,1.1598144313382,0.971421986118279,0,0,0,0,0,0,0.231522474323834,0.655678681511872,0,0,0,1.37415926980462,4.1586496045792,4.6492130034174,0,0.751871343838829,0.580120991762195,0,0.71421575442263,0,0,0,1.83491713361816,0,0,0.271965960763659,8.29066311646717,3.7031878836078,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0,0,0,0.426467963801962,0.23806443146374,0.775066918032073,0.186224142887574,0,0,0.404234377916439,0.870866991587845,0,0.202056159043763,0.573777643141411,0.332660356546013,0.732629417498771,0,0,0,0,0.244482888365733,0.406896178315738,0,15.095534519327,0 | |||
|short_description=p1@LRRC55 | |||
}} |
Revision as of 07:42, 11 January 2014
Short description: | p1@LRRC55 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LRRC55_5end |
Coexpression cluster: | NA |
Association with transcript: | 42bp_to_BC150572_5end |
EntrezGene: | LRRC55 |
HGNC: | 32324 |
UniProt: | Q6ZSA7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 1.15e-15 | 2 |
endothelial cell of hepatic sinusoid | 1.15e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 3.87e-23 | 3 |
dorsal region element | 3.87e-23 | 3 |
dorsum | 3.87e-23 | 3 |
hepatic sinusoid | 1.15e-15 | 2 |
abdomen blood vessel | 1.15e-15 | 2 |
sinusoid | 1.15e-15 | 2 |
abdominal segment blood vessel | 1.15e-15 | 2 |
posterior neural tube | 4.41e-12 | 15 |
chordal neural plate | 4.41e-12 | 15 |
neural tube | 1.90e-11 | 56 |
neural rod | 1.90e-11 | 56 |
future spinal cord | 1.90e-11 | 56 |
neural keel | 1.90e-11 | 56 |
duodenum | 3.44e-11 | 2 |
liver parenchyma | 9.35e-11 | 3 |
liver lobule | 9.35e-11 | 3 |
hepatic duct | 9.35e-11 | 3 |
medulla oblongata | 2.26e-10 | 3 |
myelencephalon | 2.26e-10 | 3 |
future myelencephalon | 2.26e-10 | 3 |
organ system subdivision | 2.11e-09 | 223 |
lymph node | 3.31e-09 | 1 |
central nervous system | 5.48e-09 | 81 |
submandibular gland | 1.05e-08 | 1 |
submandibular gland primordium | 1.05e-08 | 1 |
vermiform appendix | 1.13e-08 | 1 |
caecum | 1.13e-08 | 1 |
midgut | 1.13e-08 | 1 |
nervous system | 6.33e-08 | 89 |
anatomical conduit | 1.46e-07 | 240 |
neural plate | 2.37e-07 | 82 |
presumptive neural plate | 2.37e-07 | 82 |
lymphoid system | 2.58e-07 | 10 |
adult organism | 3.77e-07 | 114 |
small intestine | 4.79e-07 | 4 |
neurectoderm | 6.12e-07 | 86 |
intestine | 7.59e-07 | 17 |