FFCP PHASE1:Hg19::chr12:62860581..62860620,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23041 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29177 | |||
|TSSclassifier=strong | |||
|UniProt=Q7Z3U7,F8W1Z6 | |||
|association_with_transcript=0bp_to_ENST00000261188,ENST00000280379,ENST00000393630,ENST00000393632,ENST00000546600,NM_015026,uc001srd.1,uc001sre.2,uc009zqj.2,uc010ssl.1,uc010ssm.1,uc010ssn.1_5end | |||
|coexpression_cluster_id=C1680 | |||
|description=CAGE_peak_1_at_MON2_5end | |||
|id=chr12:62860581..62860620,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.40e-10!140;CL:0000766!6.70e-08!76;CL:0000037!1.41e-07!172;CL:0000566!1.41e-07!172;CL:0002031!1.96e-07!124 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.12e-10,136;CL:0000766,1.55e-08,72;CL:0000037,6.69e-08,168;CL:0002031,7.66e-08,120;CL:0002087,4.15e-07,115;CL:0002032,8.40e-07,161;CL:0000837,8.40e-07,161;CL:0000557,8.45e-07,67 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.55e-38!115;UBERON:0001049!5.79e-19!57;UBERON:0005068!5.79e-19!57;UBERON:0006241!5.79e-19!57;UBERON:0007135!5.79e-19!57;UBERON:0002616!5.97e-18!59;UBERON:0002780!7.57e-17!41;UBERON:0001890!7.57e-17!41;UBERON:0006240!7.57e-17!41;UBERON:0003080!1.20e-16!42;UBERON:0000955!9.24e-15!69;UBERON:0006238!9.24e-15!69;UBERON:0001017!1.98e-14!82;UBERON:0005743!3.45e-13!86;UBERON:0001893!5.62e-13!34;UBERON:0002020!1.43e-12!34;UBERON:0003528!1.43e-12!34;UBERON:0002791!1.81e-12!33;UBERON:0000073!3.38e-12!94;UBERON:0001016!3.38e-12!94;UBERON:0001869!7.52e-12!32;UBERON:0003075!2.27e-10!86;UBERON:0007284!2.27e-10!86;UBERON:0002346!3.09e-10!90;UBERON:0002619!5.35e-10!22;UBERON:0001950!2.68e-09!20;UBERON:0000956!5.36e-09!25;UBERON:0000203!5.36e-09!25;UBERON:0000153!6.69e-08!129;UBERON:0007811!6.69e-08!129;UBERON:0003056!2.21e-07!61;UBERON:0000033!4.60e-07!123;UBERON:0002390!7.38e-07!102;UBERON:0003061!7.38e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.15e-12;41!UBERON:0001890;2.15e-12;41!UBERON:0007023;1.62e-11;114!UBERON:0001893;3.26e-11;34!UBERON:0000073;4.97e-11;53!UBERON:0002616;4.97e-11;53!UBERON:0003528;6.04e-11;34!UBERON:0002020;6.04e-11;34!UBERON:0001869;9.97e-11;32!UBERON:0002791;1.04e-10;32!UBERON:0002619;5.02e-10;22!UBERON:0001950;2.52e-09;20!UBERON:0000956;5.53e-09;25!UBERON:0000203;5.53e-09;25!UBERON:0001017;9.38e-08;75!UBERON:0000955;1.28e-07;68!UBERON:0001016;9.34e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.73e-38,114;UBERON:0001049,4.06e-19,56;UBERON:0005068,4.06e-19,56;UBERON:0006241,4.06e-19,56;UBERON:0007135,4.06e-19,56;UBERON:0000073,5.16e-18,53;UBERON:0002616,5.16e-18,53;UBERON:0002780,7.57e-17,41;UBERON:0001890,7.57e-17,41;UBERON:0003080,7.57e-17,41;UBERON:0006240,7.57e-17,41;UBERON:0000955,7.86e-15,68;UBERON:0006238,7.86e-15,68;UBERON:0001017,1.78e-14,81;UBERON:0001016,2.60e-13,89;UBERON:0001893,5.62e-13,34;UBERON:0003528,1.43e-12,34;UBERON:0002020,1.43e-12,34;UBERON:0002791,7.24e-12,32;UBERON:0001869,7.52e-12,32;UBERON:0003075,3.68e-10,82;UBERON:0007284,3.68e-10,82;UBERON:0002346,5.09e-10,86;UBERON:0002619,5.35e-10,22;UBERON:0001950,2.68e-09,20;UBERON:0000956,5.36e-09,25;UBERON:0000203,5.36e-09,25;UBERON:0003056,7.96e-08,61;UBERON:0002390,2.66e-07,98;UBERON:0003061,2.66e-07,98 | |||
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| |||
|short_description=p1@MON2 | |||
}} |
Revision as of 14:20, 11 January 2014
Short description: | p1@MON2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MON2_5end |
Coexpression cluster: | C1680_Neutrophils_Eosinophils_pineal_optic_cerebellum_pituitary_parietal |
Association with transcript: | 0bp_to_ENST00000261188, ENST00000280379, ENST00000393630, ENST00000393632, ENST00000546600, NM_015026, uc001srd.1, uc001sre.2, uc009zqj.2, uc010ssl.1, uc010ssm.1, uc010ssn.1_5end |
EntrezGene: | MON2 |
HGNC: | 29177 |
UniProt: | Q7Z3U7F8W1Z6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.12e-10 | 136 |
myeloid leukocyte | 1.55e-08 | 72 |
hematopoietic stem cell | 6.69e-08 | 168 |
hematopoietic lineage restricted progenitor cell | 7.66e-08 | 120 |
nongranular leukocyte | 4.15e-07 | 115 |
hematopoietic oligopotent progenitor cell | 8.40e-07 | 161 |
hematopoietic multipotent progenitor cell | 8.40e-07 | 161 |
granulocyte monocyte progenitor cell | 8.45e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.73e-38 | 114 |
neural tube | 4.06e-19 | 56 |
neural rod | 4.06e-19 | 56 |
future spinal cord | 4.06e-19 | 56 |
neural keel | 4.06e-19 | 56 |
regional part of nervous system | 5.16e-18 | 53 |
regional part of brain | 5.16e-18 | 53 |
regional part of forebrain | 7.57e-17 | 41 |
forebrain | 7.57e-17 | 41 |
anterior neural tube | 7.57e-17 | 41 |
future forebrain | 7.57e-17 | 41 |
brain | 7.86e-15 | 68 |
future brain | 7.86e-15 | 68 |
central nervous system | 1.78e-14 | 81 |
nervous system | 2.60e-13 | 89 |
telencephalon | 5.62e-13 | 34 |
brain grey matter | 1.43e-12 | 34 |
gray matter | 1.43e-12 | 34 |
regional part of telencephalon | 7.24e-12 | 32 |
cerebral hemisphere | 7.52e-12 | 32 |
neural plate | 3.68e-10 | 82 |
presumptive neural plate | 3.68e-10 | 82 |
neurectoderm | 5.09e-10 | 86 |
regional part of cerebral cortex | 5.35e-10 | 22 |
neocortex | 2.68e-09 | 20 |
cerebral cortex | 5.36e-09 | 25 |
pallium | 5.36e-09 | 25 |
pre-chordal neural plate | 7.96e-08 | 61 |
hematopoietic system | 2.66e-07 | 98 |
blood island | 2.66e-07 | 98 |