FFCP PHASE1:Hg19::chr12:6493319..6493405,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4055 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6718 | |||
|TSSclassifier=strong | |||
|UniProt=F5H6F8,B3KTD9,P36941 | |||
|association_with_transcript=0bp_to_ENST00000535739,ENST00000536876,ENST00000540343,NM_002342,uc001qny.1,uc001qnz.1_5end | |||
|description=CAGE_peak_1_at_LTBR_5end | |||
|id=chr12:6493319..6493405,+ | |||
|ontology_enrichment_celltype=CL:0000548!7.34e-19!679;CL:0000004!7.34e-19!679;CL:0000255!7.34e-19!679;CL:0000012!2.28e-18!682;CL:0002371!3.04e-16!591;CL:0000144!1.17e-15!625;CL:0000063!3.27e-15!578;CL:0000066!2.52e-12!254;CL:0000222!1.63e-10!119;CL:0000220!2.52e-10!246;CL:0002321!9.61e-10!248;CL:0000003!1.03e-08!722;CL:0000183!4.23e-07!59;CL:0000057!4.29e-07!75;CL:0002194!7.88e-07!63;CL:0000576!7.88e-07!63;CL:0000040!7.88e-07!63;CL:0000559!7.88e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.11e-07;39!CL:0000234;1.11e-07;39!CL:0000860;1.87e-07;33!CL:0002057;1.87e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.86e-12,253;CL:0000222,6.27e-11,121;CL:0002321,6.53e-10,250;CL:0000473,4.80e-08,48;CL:0000234,4.80e-08,48;CL:0002194,2.91e-07,59;CL:0000576,2.91e-07,59;CL:0000040,2.91e-07,59;CL:0000559,2.91e-07,59;CL:0000057,3.72e-07,76;CL:0002009,6.87e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!6.35e-22!448;UBERON:0004120!6.35e-22!448;UBERON:0006603!6.35e-22!448;UBERON:0000468!4.40e-13!659;UBERON:0002100!8.82e-13!216;UBERON:0000467!3.25e-11!625;UBERON:0000480!6.63e-11!626;UBERON:0002204!8.13e-11!167;UBERON:0003104!1.24e-10!238;UBERON:0009142!1.24e-10!238;UBERON:0005256!1.51e-10!143;UBERON:0004119!2.34e-10!169;UBERON:0000925!2.34e-10!169;UBERON:0006595!2.34e-10!169;UBERON:0000923!5.61e-10!604;UBERON:0005291!5.61e-10!604;UBERON:0006598!5.61e-10!604;UBERON:0002532!5.61e-10!604;UBERON:0002050!7.01e-10!605;UBERON:0005423!7.01e-10!605;UBERON:0003081!2.10e-09!216;UBERON:0003102!4.71e-09!95;UBERON:0003914!1.20e-08!118;UBERON:0000922!1.21e-08!612;UBERON:0000466!4.35e-08!126;UBERON:0000486!4.39e-08!82;UBERON:0000490!6.02e-08!138;UBERON:0001007!5.89e-07!155;UBERON:0001555!5.89e-07!155;UBERON:0007026!5.89e-07!155;UBERON:0009569!8.17e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,5.68e-15,315;UBERON:0004120,5.68e-15,315;UBERON:0006603,5.68e-15,315;UBERON:0002100,2.52e-12,199;UBERON:0002204,5.52e-12,167;UBERON:0003104,1.44e-09,160;UBERON:0009142,1.44e-09,160;UBERON:0003102,1.67e-09,99;UBERON:0005256,2.16e-09,122;UBERON:0004119,2.64e-09,160;UBERON:0000925,2.64e-09,160;UBERON:0006595,2.64e-09,160;UBERON:0003081,6.12e-09,203;UBERON:0003914,1.35e-08,117;UBERON:0000490,1.57e-08,148;UBERON:0000486,3.70e-08,83;UBERON:0002050,4.08e-08,564;UBERON:0000923,4.87e-08,560;UBERON:0010316,4.87e-08,560;UBERON:0005291,4.87e-08,560;UBERON:0006598,4.87e-08,560;UBERON:0010317,4.87e-08,560;UBERON:0002532,4.87e-08,560;UBERON:0005423,4.95e-08,581;UBERON:0007503,5.48e-08,78;UBERON:0000922,5.31e-07,592 | |||
|phase1_expression=91.9292599109016,146.230657817541,140.249632075491,139.101884710851,116.656845645522,208.488907259988,91.1879561405918,79.5967040517807,141.301424856113,216.000130184826,403.329075088063,76.0175975012999,106.034325247838,74.1360454230679,119.965850013506,55.1306620090456,46.4074786578462,44.5489155136298,67.33472623309,3.81675280038043,11.6280394009224,8.14982275843028,1.14494394852423,1.09499540058307,4.89616294419731,0,0,0,55.8577273125444,16.1208347200829,49.6959755844604,93.7809648968506,137.349898962882,95.0267806128644,0,0,12.6248188913984,47.6436051337415,34.2931005173942,37.3258697631265,148.90379036955,43.4017512465433,110.242342947432,87.3843415065184,125.454813304685,137.059994571116,68.566565887177,100.324964677325,105.60987247523,111.336955828672,141.913031417122,99.3225365532058,42.4037187306041,83.9130088658974,82.6101568225485,94.1211697713023,113.801864574122,66.9675983646352,65.808036859744,80.2322567690234,85.6711748570715,135.56888437674,185.501201588118,158.981831948695,70.5208449867459,98.7250290962583,94.6689818473274,94.7207468017922,138.714456299774,107.725666973738,57.51295275017,72.5506942895502,65.5077142002631,67.1791810471975,69.0963974886392,39.8351426465914,93.5697497450304,88.1538360979642,44.6817131017883,48.4521664360123,53.1107528121571,26.8516306034012,0,1.63841583378639,0,2.98711155796555,0.400395987036012,0,1.32208974556972,0,0,0.587237189370939,0.382273228125229,10.5737062863221,2.80254281490768,50.8331283615899,0.196709770113833,0,0.616804496998528,0,0,0,0,0.334231370655521,0,0,0,0,0,0.328875809207352,0,0.579606171470105,0,0,0,0,0,0,0,0.318565414324097,0,0,3.61380285786655,1.4078527226986,1.24930726552346,5.20909954496837,0,0,0,0,26.8187552945358,119.384753027247,89.5037932904712,105.540232496293,88.7368101825524,139.197504721352,28.6302940938396,63.7491680096453,7.9409246417817,11.9733874629785,21.7830268518953,35.4298399221313,108.195700622885,83.797284069281,46.085729898965,48.233937231897,145.854882689195,16.9328343256793,8.00792875092179,14.486842551853,31.8019851786728,73.9801751791267,100.323604964595,41.2674797604527,203.876725998014,62.4517955203953,125.81496985516,69.2556914573801,85.0281367821237,40.8359147572898,180.064704747789,91.99292479194,70.533934631421,44.4872327218501,65.6214977784225,25.9862209306672,33.6794058939255,37.4996230009463,85.8573169808946,33.2242980848845,51.8460935323053,25.038279312852,15.511210565933,113.820547609201,53.1759988313991,45.5869841992487,51.2423529747157,107.563732780805,54.618930858547,61.6745360156538,46.9695581210702,105.573710722544,81.5372912747388,65.3346759537987,68.3270755014258,139.702905716272,97.9499071615998,111.537001552887,199.158129017744,43.3558584373781,71.8848153454163,52.3757863951191,23.9571957664835,23.174383105871,97.9940022023488,26.4093782220301,170.79751628354,91.4762200107181,141.189416618056,88.2856521079886,186.840716872222,21.8836948140286,60.0568895385428,87.5522604930018,46.5316278133688,86.7360462111226,172.773767742586,103.223286675619,40.0038887586162,45.7012812071734,84.1369647603461,138.642086390994,71.9306654084303,45.860016128122,49.5070837842029,150.886041023692,117.703902234728,58.3122018503904,96.9285432703412,59.4857489093228,85.9123213890207,36.1700032637229,73.4197364704411,143.399553047166,78.2781366095695,76.290022373475,1.09776335516636,0.132529768321485,0.813357600086629,1.45125477021519,1.00928340350251,0,50.0638503455411,170.458848621115,129.846826071332,184.818435356728,215.841965019206,48.9790152164954,45.5178663210875,43.1409743491433,50.1837575932392,47.2798393680521,43.1832526782196,54.8763424211869,47.8780374905844,61.5595451114225,90.0549654642071,123.412760947032,64.6171197790298,116.136881994578,82.3907726341901,239.809840869341,97.4803346024317,0,45.8746875765814,30.5390702331375,72.7644392259187,92.169437671248,66.9522956261461,45.5535150179966,116.639373301096,228.785652761507,18.7630744632855,21.099333705464,25.9473214261166,50.816989611898,102.782783792008,137.934260370084,42.6710374898009,52.3676558877872,119.415247952388,36.7386696268603,106.122649874152,106.856570744926,45.5231567418909,44.8009307285941,61.4371465741539,101.431244541373,96.229052470468,0,1.05658120815871,14.0983118567725,18.0149941771202,49.6132763365673,35.4953229093225,104.664828602968,168.793123982468,131.725783437483,100.153977893037,59.1675823952517,133.48094403848,78.3796279574071,50.5713679846605,52.803565791084,64.6358578788889,507.872153109673,138.629651419184,49.7304278013708,61.364387777706,64.8162583140598,69.5060746914064,66.6055447540248,75.9213146324764,306.038585440774,153.122702641223,75.5707947561465,71.4337816972517,111.665214083614,102.1879488232,96.7402139046326,61.6833355593292,152.029725801488,156.704212526823,143.367078848462,107.831184971212,103.375742250703,72.7448215707664,100.333445520632,87.7383897290137,107.615638907177,0,1.77327684181734,0.215627574859517,2.18183161675572,0.76228387266739,2.60279707715243,1.54657762555539,1.8426789186778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| |||
|short_description=p1@LTBR | |||
}} |
Revision as of 11:40, 11 January 2014
Short description: | p1@LTBR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LTBR_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000535739, ENST00000536876, ENST00000540343, NM_002342, uc001qny.1, uc001qnz.1_5end |
EntrezGene: | LTBR |
HGNC: | 6718 |
UniProt: | F5H6F8B3KTD9P36941 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.86e-12 | 253 |
mesodermal cell | 6.27e-11 | 121 |
embryonic cell | 6.53e-10 | 250 |
defensive cell | 4.80e-08 | 48 |
phagocyte | 4.80e-08 | 48 |
monopoietic cell | 2.91e-07 | 59 |
monocyte | 2.91e-07 | 59 |
monoblast | 2.91e-07 | 59 |
promonocyte | 2.91e-07 | 59 |
fibroblast | 3.72e-07 | 76 |
macrophage dendritic cell progenitor | 6.87e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 5.68e-15 | 315 |
mesoderm-derived structure | 5.68e-15 | 315 |
presumptive mesoderm | 5.68e-15 | 315 |
trunk | 2.52e-12 | 199 |
musculoskeletal system | 5.52e-12 | 167 |
mesenchyme | 1.44e-09 | 160 |
entire embryonic mesenchyme | 1.44e-09 | 160 |
surface structure | 1.67e-09 | 99 |
trunk mesenchyme | 2.16e-09 | 122 |
endoderm-derived structure | 2.64e-09 | 160 |
endoderm | 2.64e-09 | 160 |
presumptive endoderm | 2.64e-09 | 160 |
lateral plate mesoderm | 6.12e-09 | 203 |
epithelial tube | 1.35e-08 | 117 |
unilaminar epithelium | 1.57e-08 | 148 |
multilaminar epithelium | 3.70e-08 | 83 |
embryonic structure | 4.08e-08 | 564 |
germ layer | 4.87e-08 | 560 |
germ layer / neural crest | 4.87e-08 | 560 |
embryonic tissue | 4.87e-08 | 560 |
presumptive structure | 4.87e-08 | 560 |
germ layer / neural crest derived structure | 4.87e-08 | 560 |
epiblast (generic) | 4.87e-08 | 560 |
developing anatomical structure | 4.95e-08 | 581 |
epithelial vesicle | 5.48e-08 | 78 |
embryo | 5.31e-07 | 592 |