FFCP PHASE1:Hg19::chr20:1905446..1905489,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2607 | |||
|description=CAGE_peak_at_chr20:1905446..1905489,+ | |||
|id=chr20:1905446..1905489,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.67e-15!76;CL:0002057!3.42e-15!42;CL:0002194!4.79e-15!63;CL:0000576!4.79e-15!63;CL:0000040!4.79e-15!63;CL:0000559!4.79e-15!63;CL:0002009!2.00e-14!65;CL:0000839!4.86e-14!70;CL:0000557!5.03e-14!71;CL:0000860!5.86e-13!45;CL:0000763!2.93e-09!112;CL:0000049!2.93e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.36e-29;33!CL:0002057;7.36e-29;33!CL:0000473;3.31e-26;39!CL:0000234;3.31e-26;39!CL:0000576;3.81e-16;48!CL:0000766;1.29e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,5.35e-29,48;CL:0000234,5.35e-29,48;CL:0000860,2.66e-27,42;CL:0002057,2.66e-27,42;CL:0002194,4.20e-26,59;CL:0000576,4.20e-26,59;CL:0000040,4.20e-26,59;CL:0000559,4.20e-26,59;CL:0002009,6.45e-25,61;CL:0000766,1.97e-24,72;CL:0000839,2.86e-22,66;CL:0000557,8.66e-22,67;CL:0000763,1.68e-14,108;CL:0000049,1.68e-14,108;CL:0002087,8.05e-09,115;CL:0000738,8.72e-09,136;CL:0002031,4.19e-08,120;CL:0000775,8.42e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;7.15e-22;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!1.66e-11!34;UBERON:0002371!2.86e-11!80;UBERON:0002020!3.65e-11!34;UBERON:0003528!3.65e-11!34;UBERON:0002791!5.97e-11!33;UBERON:0001869!6.20e-11!32;UBERON:0001049!1.44e-10!57;UBERON:0005068!1.44e-10!57;UBERON:0006241!1.44e-10!57;UBERON:0007135!1.44e-10!57;UBERON:0002193!3.02e-10!112;UBERON:0002780!3.16e-10!41;UBERON:0001890!3.16e-10!41;UBERON:0006240!3.16e-10!41;UBERON:0002390!1.11e-09!102;UBERON:0003061!1.11e-09!102;UBERON:0003080!1.20e-09!42;UBERON:0002405!1.21e-09!115;UBERON:0001474!1.34e-09!86;UBERON:0000956!2.39e-09!25;UBERON:0000203!2.39e-09!25;UBERON:0002619!2.91e-09!22;UBERON:0004765!3.43e-09!101;UBERON:0001434!3.43e-09!101;UBERON:0001950!2.99e-08!20;UBERON:0002616!4.09e-08!59;UBERON:0007023!1.01e-07!115;UBERON:0000955!7.53e-07!69;UBERON:0006238!7.53e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.83e-16;22!UBERON:0001950;7.61e-16;20!UBERON:0000956;4.83e-14;25!UBERON:0000203;4.83e-14;25!UBERON:0001869;1.56e-12;32!UBERON:0001893;1.18e-11;34!UBERON:0002791;1.34e-11;32!UBERON:0000200;1.74e-11;6!UBERON:0003528;2.57e-10;34!UBERON:0002020;2.57e-10;34!UBERON:0002780;4.54e-09;41!UBERON:0001890;4.54e-09;41!UBERON:0000073;4.35e-07;53!UBERON:0002616;4.35e-07;53!UBERON:0001871;9.76e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.84e-18,76;UBERON:0002619,5.38e-17,22;UBERON:0001950,2.08e-16,20;UBERON:0001474,5.16e-16,82;UBERON:0001869,4.34e-15,32;UBERON:0002405,4.97e-15,93;UBERON:0000956,1.68e-14,25;UBERON:0000203,1.68e-14,25;UBERON:0001893,6.48e-14,34;UBERON:0004765,9.51e-14,90;UBERON:0002780,1.88e-13,41;UBERON:0001890,1.88e-13,41;UBERON:0003080,1.88e-13,41;UBERON:0006240,1.88e-13,41;UBERON:0002791,2.44e-13,32;UBERON:0002390,6.22e-13,98;UBERON:0003061,6.22e-13,98;UBERON:0002193,1.38e-12,108;UBERON:0001434,2.24e-12,100;UBERON:0003528,2.73e-12,34;UBERON:0002020,2.73e-12,34;UBERON:0000200,8.33e-12,6;UBERON:0001049,1.16e-11,56;UBERON:0005068,1.16e-11,56;UBERON:0006241,1.16e-11,56;UBERON:0007135,1.16e-11,56;UBERON:0000073,1.75e-11,53;UBERON:0002616,1.75e-11,53;UBERON:0000955,2.24e-09,68;UBERON:0006238,2.24e-09,68;UBERON:0001017,1.74e-08,81;UBERON:0003056,2.52e-07,61;UBERON:0001871,3.99e-07,6;UBERON:0001016,5.24e-07,89;UBERON:0002204,8.41e-07,167 | |||
|phase1_expression=0.181678379270557,1.07050261945492,0.281908808191942,1.0007329835313,0,2.61701557230111,0,0,0,0.245733936501509,0,0,0.791300934685361,0.123766352960047,0,0,0.602694528023977,0.730310090387373,0,0,0.204000691244253,0,0.286235987131057,0.821246550437305,0.125542639594803,0.305653622991805,0.164201178899891,0.236132343941038,0.393364276848904,0,0.464448369948228,0,0,0.369754010166788,0,0,0,0,2.4065333696417,1.08505435357926,0.223915474239924,0.32389366601898,1.03030227053675,2.61716829803216,2.26725566213286,0.970336244751265,4.88100977501938,3.70051099219643,2.47765096716083,3.45230870786581,0.512321413058201,0,3.10271112662957,1.29096936716765,1.35426486594342,3.57660445130949,1.63743690034707,0.898893937780338,4.28517449319264,0.962787081228281,1.27867425159808,1.9791078011203,2.19410023383795,0.852449501065388,6.96502172708602,1.70215567407342,4.35975574296902,2.00998932205395,1.5644487552606,1.3031330682307,3.02699751316684,1.10483290796269,2.84816148696796,0.211255286311942,0.425208599930087,0,1.01095768031846,0.901061357049038,1.44653028027372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0,0.361439152384566,1.00267582127178,1.30361867064741,0,0.486634870302636,0,0,0.087834785693126,0.523916301990851,0.364295288292542,0,0.649094787309367,1.0447784237956,2.6591592103773,0,0,0,0,0,0,0,0,0.275118041940067,0,0.516833518338658,0,0.66944122552934,0.805658634218294,2.28081631715554,2.68468263302986,0,0,0.0892997282840798,0.44905874525234,0.337834441449967,0,0,0,0,0,0.872188104285069,1.49091585508596,0.506522046658319,0.264818361626438,0.286836620748814,0,0.560677600142307,0,2.22000793575444,0,0,0.326923806226917,0,0,0.234321431833797,0,0,0,0.117434498643765,0.161872944368132,0,0,0.122834317311768,0,0,0.247266929278557,0,0.718618141816238,0.168336113954066,0,0,0,0.30648779579902,0.45071417671979,0,0.179389635688862,0.427114777637135,1.90738711043606,0.600182192168805,0.103052529238439,0,1.48893485065272,1.35021065793013,0.584622030967192,0,0.552299391853796,0.484938170456436,0.355009592516614,0.403008392910561,0.508681776931463,0.386521706326594,0.818238361772504,0,0.121973706129595,0,0.232387885739037,0.10366105501537,0.504641701751257,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0,0,0,0.368965315629341,0,0.109750285408626,0,0.201057944823262,0.462942225792648,0,0,0,0,0,1.58803092537181,0.462985512576611,1.33177906564219,0,0,0.738651018262192,0.702012795417713,2.0808362720422,0,0.839910640994298,0.425325291727159,0.0895585227028483,0.290633938513962,0,0.985326475791887,0.264145302039678,0.207328115540772,0.144119953416961,0.12624243342638,0.825472625798197,0.763976851116555,0,3.4214489204541,0.205654985406647,1.50171528921959,2.85826432630578,0,0,0.2933531432838,0.258543431515556,0,0,0,0,0.257207374262142,0,0.266422179016099,0.57191197463259,0,0,0,0.355391948742546,0,0.602878754119172,0,1.59956785891291,3.64871341923571,1.50677127429638,0,0,0,0,0.289562613335158,1.02738161275192,0.358121926479791,0,0,0,0.256686072559497,0,0,0,0,1.91381625495949,2.99602809578873,8.97484377612075,1.65766205374414,0.736148950314839,0.500170521059677,0,0.207970861530807,1.07057393278297,0.315404830067869,0.35142424497814,0.300946099727719,4.5481500811197,0,0.664225598535437,0,0.695068915744663,0.195801157462741,0,0.206768026122887,0.647142602455851,0.213455115606889,0,0,0.30239029332968,0.496215615637554,0.306923946576125,2.24528075546459,1.66580894032411,0.511707249066704,1.93024705372329,0,0.771048469013278,0.355123450626254,0.0821271560138091,0.519254429183621,0.464841513839837,0.241718899183244,2.20557117333613,0.0920809889358963,0.34444334449382,0.364182336013434,0.393373244878272,0.451199612907412,0.539107359730903,0,2.92278449306521,0.422206515571503,0,0,0.215915916102139,0,0,1.50506932156456,1.01950509218015,0,1.11937377361089,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.206082023295445,0.0915694648183434,0,0.574265537996172,1.95018073810956,0,0.48335359146061,0.308097234229289,0,0.275673144969061,0.107420244868274,0.145016693914229,0.0852266274161009,0.0890320356467374,0.330569830721956,0.576570202095319,0.127612712494584,0.6069466851333,0.464845549297286,0.94443704049192,0,0.616067160352178,0,0,0.74129687641568,0,0,0,0,1.27948895655667,0,0,0.78494864019923,0,0.823611089208164,0.235624804691373,0.202182481573316,0,0,0,0.487426979262569,0,0.272999822815972,0.565621727814851,0,0,1.32687795048244,1.75380354101505,0,0,0,0,0,0,0.294747123039363,0,0,0.844430541190656,0.987884678879706,0.379473173765715,0,0.192444225451024,0,0,0.376575203107117,0.43050537267123,1.68471475667626,1.33029046061003,0.918893600827838,0,0.764637207142375,3.41788312304498,0,0,0.648473311192717,0.540031437238115,0.79312517629427,0.106824071127473,0,0,0,0,0,0,0.199579371432817,0.191505370132367,0.423347165447766,0.324621940274555,0.280797178113459,0,0,0,0,0.642352300414798,0.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| |||
|short_description=p@chr20:1905446..1905489,+ | |||
}} |
Revision as of 09:52, 21 January 2014
Short description: | p@chr20:1905446..1905489, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr20:1905446..1905489, + |
Coexpression cluster: | C2607_Neutrophils_medial_Monocytederived_CD14_amygdala_renal_occipital |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 5.35e-29 | 48 |
phagocyte | 5.35e-29 | 48 |
classical monocyte | 2.66e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.66e-27 | 42 |
monopoietic cell | 4.20e-26 | 59 |
monocyte | 4.20e-26 | 59 |
monoblast | 4.20e-26 | 59 |
promonocyte | 4.20e-26 | 59 |
macrophage dendritic cell progenitor | 6.45e-25 | 61 |
myeloid leukocyte | 1.97e-24 | 72 |
myeloid lineage restricted progenitor cell | 2.86e-22 | 66 |
granulocyte monocyte progenitor cell | 8.66e-22 | 67 |
myeloid cell | 1.68e-14 | 108 |
common myeloid progenitor | 1.68e-14 | 108 |
nongranular leukocyte | 8.05e-09 | 115 |
leukocyte | 8.72e-09 | 136 |
hematopoietic lineage restricted progenitor cell | 4.19e-08 | 120 |
neutrophil | 8.42e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.84e-18 | 76 |
regional part of cerebral cortex | 5.38e-17 | 22 |
neocortex | 2.08e-16 | 20 |
bone element | 5.16e-16 | 82 |
cerebral hemisphere | 4.34e-15 | 32 |
immune system | 4.97e-15 | 93 |
cerebral cortex | 1.68e-14 | 25 |
pallium | 1.68e-14 | 25 |
telencephalon | 6.48e-14 | 34 |
skeletal element | 9.51e-14 | 90 |
regional part of forebrain | 1.88e-13 | 41 |
forebrain | 1.88e-13 | 41 |
anterior neural tube | 1.88e-13 | 41 |
future forebrain | 1.88e-13 | 41 |
regional part of telencephalon | 2.44e-13 | 32 |
hematopoietic system | 6.22e-13 | 98 |
blood island | 6.22e-13 | 98 |
hemolymphoid system | 1.38e-12 | 108 |
skeletal system | 2.24e-12 | 100 |
brain grey matter | 2.73e-12 | 34 |
gray matter | 2.73e-12 | 34 |
gyrus | 8.33e-12 | 6 |
neural tube | 1.16e-11 | 56 |
neural rod | 1.16e-11 | 56 |
future spinal cord | 1.16e-11 | 56 |
neural keel | 1.16e-11 | 56 |
regional part of nervous system | 1.75e-11 | 53 |
regional part of brain | 1.75e-11 | 53 |
brain | 2.24e-09 | 68 |
future brain | 2.24e-09 | 68 |
central nervous system | 1.74e-08 | 81 |
pre-chordal neural plate | 2.52e-07 | 61 |
temporal lobe | 3.99e-07 | 6 |
nervous system | 5.24e-07 | 89 |
musculoskeletal system | 8.41e-07 | 167 |