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FFCP PHASE1:Mm9::chr2:58999674..58999693,+: Difference between revisions

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{{FFCP|EntrezGene=227937|HGNC=|MCL_coexpression_id=1189|UniProt=|association_with_transcript=-290bp_to_ENSMUST00000122888,ENSMUST00000147562_5end|description=CAGE_peak_4_at_Pkp4_5end|id=chr2:58999674..58999693,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004111!5.62e-10!122;UBERON:0000033!5.36e-09!63;UBERON:0000025!1.31e-08!114;UBERON:0000955!1.19e-07!50;UBERON:0006238!1.19e-07!50;UBERON:0001049!1.69e-07!52;UBERON:0005068!1.69e-07!52;UBERON:0006241!1.69e-07!52;UBERON:0007135!1.69e-07!52;UBERON:0002616!3.79e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.75e-14,54;UBERON:0001049,1.46e-12,52;UBERON:0005068,1.46e-12,52;UBERON:0006241,1.46e-12,52;UBERON:0007135,1.46e-12,52;UBERON:0001017,2.40e-12,73;UBERON:0001016,1.00e-11,75;UBERON:0002346,3.39e-10,64;UBERON:0003075,3.39e-10,64;UBERON:0007284,3.39e-10,64;UBERON:0000955,3.77e-10,47;UBERON:0006238,3.77e-10,47;UBERON:0004111,4.74e-10,122;UBERON:0002616,2.66e-09,46;UBERON:0004121,4.53e-09,95;UBERON:0000924,4.53e-09,95;UBERON:0006601,4.53e-09,95;UBERON:0002021,6.47e-09,10;UBERON:0000411,6.47e-09,10;UBERON:0001950,6.47e-09,10;UBERON:0002020,8.94e-09,34;UBERON:0010371,1.78e-08,73;UBERON:0000025,1.83e-08,114;UBERON:0003076,8.97e-08,12;UBERON:0003057,8.97e-08,12;UBERON:0010314,1.34e-07,92;UBERON:0007023,3.67e-07,51;UBERON:0003080,6.17e-07,40|phase1_expression=1.12104192973356,1.39590163055744,0.454999239389536,1.20985684522732,0.500895729946347,0.33575854382378,0.233612640595526,0,0.422366166455,0.468129052643987,0.34243593645101,0,0,0,0.333109761815663,0.202475267389826,0,0,0,0,1.27564935226605,0,0.261199789138935,0,0,0,0,0.646413698057667,0.760093677825496,0.252030129759931,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0.286533439938757,0,0.404632921719196,0.528990979272033,0,0.338844532069132,0,0,0,0.7104801149461,0,0.384218305321555,0.207379224616955,0.405017814995072,0,2.28520787523043,2.87129103237098,0.122490799214954,0.479227355091182,0.919218786610021,4.40463523997555,3.83062014255563,5.06901559745603,0.395658863190582,0.182975287204819,0,4.4669279840221,2.25105044012672,4.88954392885792,3.24091444021034,1.28134512719193,0.186399445825301,0.605809546665472,0.226714680320357,2.02905142091174,0,0,0.539703191637817,0,0.448026887097336,0.561777680527007,0,0,0,0.563373679106722,0,0,0,0.649473123033642,0,0,0.91347103775248,0,0.29688427812965,0,0.913396434936424,0,0.301445281105245,0.23517741427141,0,0.494389935468748,0.86759614151947,0,0.323533699894818,0.220841518460394,0,1.86391761218122,4.9772735491963,3.97948742945565,0,0.359445373517761,0,0.127070227073065,6.29120685500255,5.49000723382352,0.376963056338593,2.60736480288415,1.79000820131231,3.94797284663164,2.59586020908412,0.509196819251581,0.746441823660558,1.0108910337347,1.68353484709179,0.520481771850815,0.459804208866946,0.540186389416048,0.60281927134286,0.476255494059295,0.512454881139399,0.749613796477831,1.29351685369508,0,0,0.175951124163949,0.219195732427575,0.556094498451196,0,0.61734640922383,0,0,0,0,0.414251545071004,0.234526059981096,0.540186184383045,0.473489471170421,0.590292695242212,0.617068451549513,0.465067889500816,1.07309360559848,1.16765342367169,1.48103864922132,0.985004784474571,1.05389452409612,0.438599962275997,0.658650345873152,1.34206418760372,2.94405927989778,0.720332286654991,0.660837565967596,0.528901133327089,0,0.464473343720877,0.38660238396628,0.201683524623343,0.667134131534611,0.190225626112559,0.474529061544512,0.823494773620054,0,1.1937388322469,0.58489226135736,0,0.432276099749388,0,0,0.114248512609729,1.1270773567308,0.610953983535943,0.775809948670503,0.701358198903186,1.45444035385792,3.69025369949005,3.45397201251025,2.34454611451421,0.296452627087149,0.166845105716094,0.589676985339609,0.449724224769707,0.811440485554012,0.72353147925725,1.01850340712568,0.575392274901621,0.162135226775035,0.274561413188081,1.43768206527355,0.744281895337007,0.624075346229121,0,0.717589654087649,0.482443521363367,1.47802552133284,0.189491411770485,0.488894929326078,1.18821560042632,0,0.837531287209079,0.476087281772027,0.585400943573396,1.26108115284953,0.664394068946325,0.318909537314974,1.3109065177259,1.89953480052485,1.73578870297814,0,0,0.491764273019036,0,5.77982123956051,4.57125577709592,0,0.757412781613119,0,0.390438744296638,0.215423397732799,0.477937595905104,1.11399337041197,0,0,1.16902343164525,0.790575555893047,6.42642632843614,0.567760340833074,1.42452482933804,0.488660878060728,1.31976098378028,1.32745138339963,0.485561272309963,0.302323556964751,1.13163047853539,1.47650946440386,0.307435147943927,0.775284879504663,0.727067458955011,0.712994756769443,1.8962205476149,4.21674434299995,3.09406629744561,2.7235168460303,0.18006109403131,0.258717367565509,0.643011105094777,0,0.535106452806212,0.329098041204242,0,0.23467170806371,0.21183207086382,1.32317038832977,0.65954501176592,0.161464426695906,0.301564624640779,0.477489376012546,0.328281799490123,0.582961673259701,5.37733375830478,0.170870880797853,0.619160603889667,0.370389054739423,0.188368457004691,0.136694227721025,0,0.679913719975421,0.559805809294632,0.138199973804424,0,0.474503990371703,0.406638934253697,0.108005340821801,1.04544148007234,0,0.674321731924103,1.07449492442937,1.04702376793612,0,1.86401793926078,1.69107881605257,0,0,0.194451188344048,0.774958940866387,0.675824501963113,0.704143431874524,0.5208175393758,0,0.241584120826006,0.288030006257865,0.632022241256357,0.202725215290164,0.205421914329655,0.129920822977795,0,0,0,0,0.302899349844443,0.304827226619999,0,0.0974578807397524,0.192423683280659,0.350630706544707,0.226730383615211,0.221985953374065,0.0897138566094757,0,0.386379188064381,0.375364950902364,1.46521299413812,1.2862102744744,1.00314420807073,2.25900737046827,3.68260189205742,2.29158205375759,1.03111909406213,4.11049511862385,4.5323633843382,4.05013500139084,0.900642406448441,2.26571204492102,2.07104124700728,0,0.399024873401031,0,0.486213434136588,0.209613162627982,0.551530525350042,0,1.03017528619447,0.64183841918363,0.252697211763798,1.77435509923168,0.377252682772152,0.561849044819294,0.384150914429216,0.631790158511746,0.476293691283074,0.579421629724277,0.38581844092741,0.824171801606613,0.735994600671987,1.02860775715625,0.354951612318675,0.476872379894642,0.726732083161643,0.282328141245992,0.423073039458382,0.914639864363863,0.789209134313529,0.407412341537585,0.561142271657738,0.593175090620871,0.689531376628944,0,0.464810523557898,0.578719832943424,0.249810577937946,1.16965804222704,0.429742108096597,1.72159498861959,0,0|short_description=p4@Pkp4}}
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=entrezgene:227937
|HGNC=
|MCL_coexpression_id=1189
|TSSclassifier=NA
|UniProt=
|association_with_transcript=-290bp_to_ENSMUST00000122888,ENSMUST00000147562_5end
|cluster_id=chr2:58999674..58999693,+
|description=CAGE_peak_4_at_Pkp4_5end
|id=chr2:58999674..58999693,+
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0004111!5.62e-10!122;UBERON:0000033!5.36e-09!63;UBERON:0000025!1.31e-08!114;UBERON:0000955!1.19e-07!50;UBERON:0006238!1.19e-07!50;UBERON:0001049!1.69e-07!52;UBERON:0005068!1.69e-07!52;UBERON:0006241!1.69e-07!52;UBERON:0007135!1.69e-07!52;UBERON:0002616!3.79e-07!49
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.75e-14,54;UBERON:0001049,1.46e-12,52;UBERON:0005068,1.46e-12,52;UBERON:0006241,1.46e-12,52;UBERON:0007135,1.46e-12,52;UBERON:0001017,2.40e-12,73;UBERON:0001016,1.00e-11,75;UBERON:0002346,3.39e-10,64;UBERON:0003075,3.39e-10,64;UBERON:0007284,3.39e-10,64;UBERON:0000955,3.77e-10,47;UBERON:0006238,3.77e-10,47;UBERON:0004111,4.74e-10,122;UBERON:0002616,2.66e-09,46;UBERON:0004121,4.53e-09,95;UBERON:0000924,4.53e-09,95;UBERON:0006601,4.53e-09,95;UBERON:0002021,6.47e-09,10;UBERON:0000411,6.47e-09,10;UBERON:0001950,6.47e-09,10;UBERON:0002020,8.94e-09,34;UBERON:0010371,1.78e-08,73;UBERON:0000025,1.83e-08,114;UBERON:0003076,8.97e-08,12;UBERON:0003057,8.97e-08,12;UBERON:0010314,1.34e-07,92;UBERON:0007023,3.67e-07,51;UBERON:0003080,6.17e-07,40
|phase1_expression=1.12104192973356,1.39590163055744,0.454999239389536,1.20985684522732,0.500895729946347,0.33575854382378,0.233612640595526,0,0.422366166455,0.468129052643987,0.34243593645101,0,0,0,0.333109761815663,0.202475267389826,0,0,0,0,1.27564935226605,0,0.261199789138935,0,0,0,0,0.646413698057667,0.760093677825496,0.252030129759931,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0.286533439938757,0,0.404632921719196,0.528990979272033,0,0.338844532069132,0,0,0,0.7104801149461,0,0.384218305321555,0.207379224616955,0.405017814995072,0,2.28520787523043,2.87129103237098,0.122490799214954,0.479227355091182,0.919218786610021,4.40463523997555,3.83062014255563,5.06901559745603,0.395658863190582,0.182975287204819,0,4.4669279840221,2.25105044012672,4.88954392885792,3.24091444021034,1.28134512719193,0.186399445825301,0.605809546665472,0.226714680320357,2.02905142091174,0,0,0.539703191637817,0,0.448026887097336,0.561777680527007,0,0,0,0.563373679106722,0,0,0,0.649473123033642,0,0,0.91347103775248,0,0.29688427812965,0,0.913396434936424,0,0.301445281105245,0.23517741427141,0,0.494389935468748,0.86759614151947,0,0.323533699894818,0.220841518460394,0,1.86391761218122,4.9772735491963,3.97948742945565,0,0.359445373517761,0,0.127070227073065,6.29120685500255,5.49000723382352,0.376963056338593,2.60736480288415,1.79000820131231,3.94797284663164,2.59586020908412,0.509196819251581,0.746441823660558,1.0108910337347,1.68353484709179,0.520481771850815,0.459804208866946,0.540186389416048,0.60281927134286,0.476255494059295,0.512454881139399,0.749613796477831,1.29351685369508,0,0,0.175951124163949,0.219195732427575,0.556094498451196,0,0.61734640922383,0,0,0,0,0.414251545071004,0.234526059981096,0.540186184383045,0.473489471170421,0.590292695242212,0.617068451549513,0.465067889500816,1.07309360559848,1.16765342367169,1.48103864922132,0.985004784474571,1.05389452409612,0.438599962275997,0.658650345873152,1.34206418760372,2.94405927989778,0.720332286654991,0.660837565967596,0.528901133327089,0,0.464473343720877,0.38660238396628,0.201683524623343,0.667134131534611,0.190225626112559,0.474529061544512,0.823494773620054,0,1.1937388322469,0.58489226135736,0,0.432276099749388,0,0,0.114248512609729,1.1270773567308,0.610953983535943,0.775809948670503,0.701358198903186,1.45444035385792,3.69025369949005,3.45397201251025,2.34454611451421,0.296452627087149,0.166845105716094,0.589676985339609,0.449724224769707,0.811440485554012,0.72353147925725,1.01850340712568,0.575392274901621,0.162135226775035,0.274561413188081,1.43768206527355,0.744281895337007,0.624075346229121,0,0.717589654087649,0.482443521363367,1.47802552133284,0.189491411770485,0.488894929326078,1.18821560042632,0,0.837531287209079,0.476087281772027,0.585400943573396,1.26108115284953,0.664394068946325,0.318909537314974,1.3109065177259,1.89953480052485,1.73578870297814,0,0,0.491764273019036,0,5.77982123956051,4.57125577709592,0,0.757412781613119,0,0.390438744296638,0.215423397732799,0.477937595905104,1.11399337041197,0,0,1.16902343164525,0.790575555893047,6.42642632843614,0.567760340833074,1.42452482933804,0.488660878060728,1.31976098378028,1.32745138339963,0.485561272309963,0.302323556964751,1.13163047853539,1.47650946440386,0.307435147943927,0.775284879504663,0.727067458955011,0.712994756769443,1.8962205476149,4.21674434299995,3.09406629744561,2.7235168460303,0.18006109403131,0.258717367565509,0.643011105094777,0,0.535106452806212,0.329098041204242,0,0.23467170806371,0.21183207086382,1.32317038832977,0.65954501176592,0.161464426695906,0.301564624640779,0.477489376012546,0.328281799490123,0.582961673259701,5.37733375830478,0.170870880797853,0.619160603889667,0.370389054739423,0.188368457004691,0.136694227721025,0,0.679913719975421,0.559805809294632,0.138199973804424,0,0.474503990371703,0.406638934253697,0.108005340821801,1.04544148007234,0,0.674321731924103,1.07449492442937,1.04702376793612,0,1.86401793926078,1.69107881605257,0,0,0.194451188344048,0.774958940866387,0.675824501963113,0.704143431874524,0.5208175393758,0,0.241584120826006,0.288030006257865,0.632022241256357,0.202725215290164,0.205421914329655,0.129920822977795,0,0,0,0,0.302899349844443,0.304827226619999,0,0.0974578807397524,0.192423683280659,0.350630706544707,0.226730383615211,0.221985953374065,0.0897138566094757,0,0.386379188064381,0.375364950902364,1.46521299413812,1.2862102744744,1.00314420807073,2.25900737046827,3.68260189205742,2.29158205375759,1.03111909406213,4.11049511862385,4.5323633843382,4.05013500139084,0.900642406448441,2.26571204492102,2.07104124700728,0,0.399024873401031,0,0.486213434136588,0.209613162627982,0.551530525350042,0,1.03017528619447,0.64183841918363,0.252697211763798,1.77435509923168,0.377252682772152,0.561849044819294,0.384150914429216,0.631790158511746,0.476293691283074,0.579421629724277,0.38581844092741,0.824171801606613,0.735994600671987,1.02860775715625,0.354951612318675,0.476872379894642,0.726732083161643,0.282328141245992,0.423073039458382,0.914639864363863,0.789209134313529,0.407412341537585,0.561142271657738,0.593175090620871,0.689531376628944,0,0.464810523557898,0.578719832943424,0.249810577937946,1.16965804222704,0.429742108096597,1.72159498861959,0,0
|short_description=p4@Pkp4
}}

Revision as of 06:56, 5 August 2015

Short description:p4@Pkp4
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_4_at_Pkp4_5end
Coexpression cluster:MCL_coexpression_mm9:1189
Association with transcript: -290bp_to_ENSMUST00000122888, ENSMUST00000147562_5end
EntrezGene:227937
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p4@Pkp4

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G71.12
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I51.40
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.45
CD326+ enterocyte, pool1.CNhs13542.11848-124I31.21
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.50
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.34
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.23
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.42
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.47
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.34
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.33
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.20
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.00
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A31.28
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.26
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.65
Ileum epithelium, pool1.CNhs13199.10252-104B90.76
Ileum epithelium, pool2.CNhs13232.10253-104C10.25
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.20
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.22
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.22
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.14
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.29
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.00
Mouse Granule cells, donor1.CNhs12131.11713-123C30.40
Mouse Granule cells, donor2.CNhs12357.11731-123E30.53
Mouse Granule cells, donor3.CNhs12108.11636-122C70.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.34
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.71
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.38
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.21
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.41
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F12.29
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D52.87
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.12
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.48
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.92
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D34.40
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F33.83
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D75.07
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.40
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.18
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.00
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E44.47
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E52.25
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I64.89
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D63.24
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F61.28
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.19
Mouse Schwann, donor1.CNhs12507.11728-123D90.61
Mouse Schwann, donor2.CNhs12573.11746-123F90.23
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G32.03
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.54
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.45
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.56
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.56
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.65
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.91
accessory axillary lymph node, adult.CNhs10475.1063-29H90.00
adrenal gland, adult.CNhs10508.49-24D70.30
adrenal gland, embryo E14.CNhs11038.406-44C50.00
adrenal gland, embryo E16.CNhs11004.1254-43D60.91
adrenal gland, embryo E17.CNhs11043.1263-45I10.00
adrenal gland, embryo E18.CNhs11026.1262-18F50.30
adrenal gland, neonate N00.CNhs11191.1311-23C10.24
adrenal gland, neonate N25.CNhs11223.1377-27I30.00
amnion, adult pregnant day17.5.CNhs10488.583-22A80.49
aorta, adult.CNhs10498.46-23H10.87
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.32
bone (os femoris), neonate N16.CNhs11225.1525-43A60.22
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H41.86
cerebellum, adult.CNhs10494.15-8B24.98
cerebellum, neonate N30.CNhs11135.1395-42I23.98
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.36
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.13
corpora quadrigemina, adult.CNhs10501.16-22A46.29
corpus striatum, adult.CNhs10487.19-21D85.49
corpus striatum, neonate N00.CNhs11226.630-43F10.38
cortex, adult.CNhs10473.12-14D52.61
cortex, neonate N30.CNhs11107.1392-42F21.79
diencephalon, adult.CNhs10482.20-12F23.95
diencephalon, neonate N30.CNhs11201.1388-42B22.60
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.51
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.75
epididymis, adult.CNhs10490.58-23B21.01
eyeball, adult.CNhs10484.31-12G41.68
eyeball, embryo E12.CNhs11016.345-16C60.52
eyeball, embryo E14.CNhs10521.399-16E20.46
eyeball, embryo E15.CNhs10593.426-16C90.54
eyeball, embryo E17.CNhs11023.1261-18D40.60
eyeball, neonate N00.CNhs11207.633-15C60.48
eyeball, neonate N01.CNhs11140.1532-43E70.51
eyeball, neonate N02.CNhs11205.1551-44G80.75
eyeball, neonate N16.CNhs11188.777-19A21.29
forelimb, embryo E11.CNhs10596.335-25E20.00
forelimb, embryo E12.CNhs10600.359-14H20.00
forelimb, embryo E13.CNhs10589.384-1E20.18
forelimb, embryo E14.CNhs10577.413-26A80.22
forelimb, embryo E15.CNhs11007.437-20E70.56
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.62
gonad, embryo E13.CNhs11044.1564-45I60.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.41
heart, embryo E12.CNhs11015.353-12F50.23
heart, embryo E13.CNhs11013.376-3I90.54
heart, embryo E14.CNhs10597.403-26D40.47
heart, embryo E15.CNhs11017.431-16C80.59
heart, embryo E16.CNhs11021.457-17C60.62
heart, embryo E17.CNhs11025.479-18E50.47
heart, embryo E18.CNhs11030.1283-20G31.07
heart, neonate N00.CNhs11213.639-21E31.17
heart, neonate N03.CNhs11221.1349-25I21.48
heart, neonate N10.CNhs11118.749-24G10.99
heart, neonate N16.CNhs11209.782-15G11.05
heart, neonate N20.CNhs11127.821-26I60.44
heart, neonate N25.CNhs11196.1351-25D30.66
heart, neonate N30.CNhs11202.1390-42D21.34
hippocampus, adult.CNhs10478.13-16E82.94
hippocampus, neonate N00.CNhs11228.627-43G10.72
intestinal mucosa, adult.CNhs10506.860-29I30.66
intestine, adult.CNhs10496.178-9A30.53
intestine, embryo E12.CNhs11019.1251-16I50.00
intestine, embryo E13.CNhs11010.381-16D50.46
intestine, embryo E15.CNhs10602.976-16D80.39
intestine, embryo E16.CNhs10585.463-22H40.20
intestine, embryo E17.CNhs10582.482-18D30.67
intestine, embryo E18.CNhs10526.1289-20F70.19
intestine, neonate N00.CNhs11126.644-26D10.47
intestine, neonate N01.CNhs11192.1322-23E90.82
intestine, neonate N06.CNhs11102.688-20B80.00
intestine, neonate N07.CNhs11095.720-20F21.19
intestine, neonate N10.CNhs11098.755-23A50.58
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.43
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.00
kidney, embryo E15.CNhs10997.434-16F80.11
kidney, embryo E16.CNhs10584.464-22A51.13
kidney, embryo E17.CNhs11028.483-18I20.61
kidney, embryo E18.CNhs11001.1288-20C70.78
kidney, neonate N00.CNhs11214.646-21G70.70
kidney, neonate N10.CNhs11206.758-6D51.45
kidney, neonate N20.CNhs11113.832-19I13.69
kidney, neonate N25.CNhs11122.1353-25F33.45
kidney, neonate N30.CNhs11203.1385-42H12.34
liver, adult pregnant day01.CNhs10466.508-5B20.30
liver, embryo E12.CNhs10601.355-15F80.17
liver, embryo E13.CNhs10524.378-3H60.59
liver, embryo E14.CNhs10594.409-16E10.45
liver, embryo E15.CNhs10520.433-16D70.81
liver, embryo E16.CNhs10523.462-17F50.72
liver, embryo E17.CNhs10510.481-18A31.02
liver, embryo E18.CNhs10579.499-43G40.58
liver, neonate N00.CNhs11117.641-24F40.16
liver, neonate N03.CNhs11123.1345-25G20.27
liver, neonate N06.CNhs11101.684-20A81.44
liver, neonate N07.CNhs11103.716-20H20.74
liver, neonate N10.CNhs11115.751-24B90.62
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.72
liver, neonate N30.CNhs11106.1382-42D10.48
lung, adult.CNhs10474.28-22B11.48
lung, embryo E12.CNhs10522.354-16G20.19
lung, embryo E14.CNhs10604.404-26F80.49
lung, embryo E15.CNhs11020.432-17C51.19
lung, embryo E16.CNhs10998.458-17B60.00
lung, embryo E17.CNhs10605.480-44A60.84
lung, embryo E18.CNhs10583.1287-20I60.48
lung, neonate N00.CNhs11224.640-42C60.59
lung, neonate N06.CNhs11212.683-20E51.26
lung, neonate N07.CNhs11111.715-19A30.66
lung, neonate N10.CNhs11219.750-23E60.32
lung, neonate N20.CNhs11109.822-18A41.31
lung, neonate N25.CNhs11119.1359-25C71.90
lung, neonate N30.CNhs11133.1394-42H21.74
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.49
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C25.78
medulla oblongata, neonate N30.CNhs11200.1396-42A34.57
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.76
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.39
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.22
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.48
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D81.11
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.00
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D51.17
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.79
olfactory brain, adult.CNhs10489.18-22I96.43
ovary, adult.CNhs10507.91-2I70.57
ovary, embryo E18.CNhs11040.505-44H71.42
ovary, neonate N00.CNhs11217.1299-22I40.49
oviduct, adult pregnant day01.CNhs10500.988-6G61.32
pancreas, adult.CNhs10486.34-16E41.33
pancreas, embryo E14.CNhs11012.405-44F40.49
pancreas, embryo E15.CNhs11042.1556-45F20.30
pancreas, embryo E16.CNhs11003.460-26E51.13
pancreas, embryo E17.CNhs10599.1558-45G31.48
pancreas, embryo E18.CNhs10580.1535-43I70.31
pancreas, neonate N00.CNhs11105.645-26G90.78
pancreas, neonate N01.CNhs11138.1531-43D70.73
pancreas, neonate N02.CNhs11139.1539-43D80.71
pancreas, neonate N16.CNhs11136.787-43B61.90
pancreas, neonate N25.CNhs11094.1555-45E24.22
pancreas, neonate N30.CNhs11182.1548-44H53.09
pituitary gland, adult.CNhs10493.21-1G82.72
pituitary gland, embryo E12.CNhs11018.346-16E60.18
pituitary gland, embryo E13.CNhs11009.370-44C70.26
pituitary gland, embryo E14.CNhs11037.398-44A50.64
pituitary gland, embryo E15.CNhs10592.427-16B90.00
pituitary gland, embryo E16.CNhs11036.449-43F60.54
pituitary gland, embryo E17.CNhs11039.1265-44F50.33
pituitary gland, neonate N00.CNhs11190.1308-22E90.00
placenta, adult pregnant day10.CNhs10472.539-13I70.23
placenta, adult pregnant day17.CNhs10464.577-18G30.21
prostate, adult.CNhs10470.859-1F81.32
skin, adult.CNhs10492.30-1C30.66
skin, neonate N00.CNhs11124.650-25G40.16
skin, neonate N03.CNhs11215.662-22H30.30
skin, neonate N06.CNhs11097.693-20I50.48
skin, neonate N10.CNhs11108.762-6C40.33
small intestine, neonate N16.CNhs11114.790-21I10.58
spinal cord, adult.CNhs10505.24-13C95.38
spleen, adult.CNhs10465.25-2G20.17
spleen, embryo E16.CNhs11035.461-43C10.62
spleen, embryo E18.CNhs11011.1271-21F20.37
spleen, neonate N10.CNhs11116.752-24D10.19
spleen, neonate N20.CNhs11112.824-19H10.14
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.68
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.56
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.14
stomach, adult.CNhs10503.33-1H60.00
stomach, embryo E12.CNhs10588.356-43E30.47
stomach, embryo E15.CNhs10603.1252-16G80.41
stomach, embryo E16.CNhs11022.459-17D40.11
stomach, embryo E17.CNhs11006.1035-18D51.05
stomach, embryo E18.CNhs10999.1286-20C60.00
stomach, neonate N03.CNhs11193.1340-24B80.67
stomach, neonate N07.CNhs11210.718-18A91.07
stomach, neonate N25.CNhs11104.1355-25E41.05
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C11.86
testis, adult.CNhs10504.57-7G51.69
testis, embryo E13.CNhs11031.389-23F50.00
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.19
testis, embryo E17.CNhs11029.486-18I50.77
testis, embryo E18.CNhs11027.503-18G50.68
testis, neonate N00.CNhs11189.1300-22B70.70
testis, neonate N07.CNhs11222.726-26I40.52
testis, neonate N10.CNhs11204.763-44D90.00
testis, neonate N20.CNhs11110.839-18H30.24
testis, neonate N30.CNhs11130.1391-42E20.29
thymus, adult.CNhs10471.38-12B50.63
thymus, embryo E14.CNhs11041.402-44I40.20
thymus, embryo E15.CNhs11005.430-45I20.21
thymus, embryo E16.CNhs11002.456-26C50.13
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.30
thymus, neonate N07.CNhs11211.713-19D30.30
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.10
thymus, neonate N25.CNhs11125.1362-25G70.19
thymus, neonate N30.CNhs11132.1393-42G20.35
tongue, adult.CNhs10499.32-1B40.23
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.22
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.00
urinary bladder, adult.CNhs10481.879-12E40.39
uterus, adult pregnant day19.CNhs10497.590-15F50.38
uterus, adult.CNhs10509.92-27E51.47
vagina, adult.CNhs10502.89-27D51.29
vesicular gland, adult.CNhs10491.51-27F81.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A12.26
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A23.68
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A32.29
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D71.03
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A44.11
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A54.53
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A64.05
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.90
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A82.27
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A92.07
whole body, embryo E11.CNhs11014.324-5I80.00
whole body, embryo E12.CNhs10587.857-27C90.40
whole body, embryo E13.CNhs10512.372-23H20.00
whole body, embryo E14.5.CNhs10578.420-27D20.49
whole body, embryo E14.CNhs10519.395-14B10.21
whole body, embryo E16.CNhs10514.453-14F20.55
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G51.03
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.64
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G51.77
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.56
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.63
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G50.58
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.39
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.74
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G51.03
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.35
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.73
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.28
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.42
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G50.91
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.79
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.56
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.59
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.69
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.46
whole body, embryo E17.5.CNhs10513.490-9F90.58
whole body, embryo E17.CNhs10517.475-3I50.25
whole body, embryo E18.CNhs10516.493-3B31.17
whole body, neonate N00.CNhs10525.657-19C20.43
whole body, neonate N01.CNhs10576.659-23C61.72
whole body, neonate N06.CNhs10515.692-21D10.00
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
regional part of nervous system2.75e-1454
neural tube1.46e-1252
neural rod1.46e-1252
future spinal cord1.46e-1252
neural keel1.46e-1252
central nervous system2.40e-1273
nervous system1.00e-1175
neurectoderm3.39e-1064
neural plate3.39e-1064
presumptive neural plate3.39e-1064
brain3.77e-1047
future brain3.77e-1047
anatomical conduit4.74e-10122
regional part of brain2.66e-0946
ectoderm-derived structure4.53e-0995
ectoderm4.53e-0995
presumptive ectoderm4.53e-0995
occipital lobe6.47e-0910
visual cortex6.47e-0910
neocortex6.47e-0910
gray matter8.94e-0934
ecto-epithelium1.78e-0873
tube1.83e-08114
posterior neural tube8.97e-0812
chordal neural plate8.97e-0812
structure with developmental contribution from neural crest1.34e-0792
adult organism3.67e-0751
anterior neural tube6.17e-0740
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