FFCP PHASE1:Hg19::chr3:143690905..143690921,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=205428|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28490|TSSclassifier=W|UniProt=Q8NDZ4,B3KTD4|association_with_transcript=265bp_to_ENST00000315691,NM_173552,uc003evo.2_5end|description=CAGE_peak_3_at_C3orf58_5end|id=chr3:143690905..143690921,+|ontology_enrichment_celltype=CL:0002031!8.66e-11!124;CL:0000738!1.71e-09!140;CL:0002087!5.10e-09!119;CL:0000839!1.00e-08!70;CL:0000557!2.90e-08!71;CL:0000037!5.23e-08!172;CL:0000566!5.23e-08!172;CL:0000860!1.09e-07!45;CL:0000988!1.21e-07!182;CL:0002009!2.17e-07!65;CL:0000766!3.08e-07!76;CL:0002032!3.55e-07!165;CL:0000837!3.55e-07!165;CL:0002057!4.79e-07!42;CL:0002194!5.36e-07!63;CL:0000576!5.36e-07!63;CL:0000040!5.36e-07!63;CL:0000559!5.36e-07!63|ontology_enrichment_celltype_v019=CL:0000860;9.30e-07;33!CL:0002057;9.30e-07;33|ontology_enrichment_celltype_v019_2=CL:0002031,4.09e-10,120;CL:0000738,2.41e-09,136;CL:0002087,3.28e-08,115;CL:0000839,4.80e-08,66;CL:0000557,1.38e-07,67;CL:0000037,2.12e-07,168;CL:0000473,4.01e-07,48;CL:0000234,4.01e-07,48;CL:0000860,5.08e-07,42;CL:0002057,5.08e-07,42;CL:0000766,5.48e-07,72;CL:0000988,5.58e-07,177|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002616!1.78e-11!59;UBERON:0001049!6.70e-11!57;UBERON:0005068!6.70e-11!57;UBERON:0006241!6.70e-11!57;UBERON:0007135!6.70e-11!57;UBERON:0000955!1.74e-10!69;UBERON:0006238!1.74e-10!69;UBERON:0003080!2.35e-09!42;UBERON:0002780!5.10e-09!41;UBERON:0001890!5.10e-09!41;UBERON:0006240!5.10e-09!41;UBERON:0001017!9.68e-09!82;UBERON:0007023!4.74e-08!115;UBERON:0001893!8.92e-08!34;UBERON:0005743!1.14e-07!86;UBERON:0002791!2.20e-07!33;UBERON:0002405!2.24e-07!115;UBERON:0003075!2.28e-07!86;UBERON:0007284!2.28e-07!86;UBERON:0002020!4.81e-07!34;UBERON:0003528!4.81e-07!34;UBERON:0000073!5.02e-07!94;UBERON:0001016!5.02e-07!94;UBERON:0001869!8.47e-07!32;UBERON:0001474!8.52e-07!86|ontology_enrichment_uberon_v019=UBERON:0002780;3.45e-07;41!UBERON:0001890;3.45e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.23e-10,56;UBERON:0005068,1.23e-10,56;UBERON:0006241,1.23e-10,56;UBERON:0007135,1.23e-10,56;UBERON:0000073,2.02e-10,53;UBERON:0002616,2.02e-10,53;UBERON:0000955,2.34e-10,68;UBERON:0006238,2.34e-10,68;UBERON:0002780,5.46e-09,41;UBERON:0001890,5.46e-09,41;UBERON:0003080,5.46e-09,41;UBERON:0006240,5.46e-09,41;UBERON:0001017,1.12e-08,81;UBERON:0003075,4.76e-08,82;UBERON:0007284,4.76e-08,82;UBERON:0001893,5.74e-08,34;UBERON:0007023,6.82e-08,114;UBERON:0001016,8.36e-08,89;UBERON:0003528,3.31e-07,34;UBERON:0002020,3.31e-07,34;UBERON:0002791,5.02e-07,32;UBERON:0001869,6.01e-07,32|phase1_expression=0.726713517082227,0.214100523890983,0.845726424575827,1.0007329835313,3.5756887554183,3.48935409640147,0,0,2.87304191019822,1.22866968250754,0.697801167972428,0.873765488520689,0.263766978228454,0.990130823680373,2.65117900582333,0.672325146451775,1.20538905604795,1.46062018077475,1.95173119516203,0.492484232307152,1.02000345622126,1.56727360739044,2.0036519099174,1.36874425072884,1.50651167513763,0.840547463227464,1.14940825229924,0.708397031823113,5.50709987588466,4.22212337906934,7.89562228911988,1.83884244895785,1.204823675113,0.369754010166788,1.00707360754392,2.27470771979874,1.76160263600908,3.87796785972314,6.01633342410425,6.2933152507597,1.56740831967947,1.29557466407592,3.34848237924443,4.36194716338694,3.02300754951048,4.36651310138069,2.09186133215116,1.23350366406548,2.78735733805593,4.31538588483226,2.81776777182011,2.36482229888585,8.27389633767885,4.51839278508678,6.77132432971709,2.44715041405386,1.91034305040492,0.674170453335254,5.81559395504715,0.641858054152187,5.11469700639233,2.63881040149373,3.78980949481101,2.98357325372886,6.38460324982885,4.53908179752912,1.86846674698672,2.51248665256743,3.12889751052121,3.9093992046921,7.26479403160043,3.31449872388808,2.84816148696796,2.11255286311942,0.850417199860174,2.72556239160889,1.57260083605093,1.65194582125657,1.44653028027372,0.570025487482497,0.19891667719909,0.730656615058536,3.51992488922645,4.91524750135918,4.44754626931777,2.13365111283254,2.00197993518006,2.87376219977242,1.98313461835459,6.67837628174755,2.27685187643779,2.34894875748376,1.52909291250092,0,1.68152568894461,3.16060901730092,1.7703879310245,2.75107533924415,3.49522548299166,1.00311897234407,2.60737813306872,0.946895611469467,0,1.00269411196656,0.294605907474837,0.886135578334485,1.89562704635511,1.0247305578054,1.1705341280389,0.657751618414705,1.10540007114339,0.869409257205157,0.741432815810302,0.267540828089713,0,0.453237370790265,1.14966148080576,0.68725489096526,0.506039384039006,0,3.90650072313851,0.950452044448374,0.903450714466637,1.27986611154418,1.24930726552346,0.236777252044017,0,6.24980903996671,8.55808626507223,5.06885413589796,0,2.68280343881454,8.69465420536006,0.361439152384566,0.50133791063589,1.15877215168659,0.795285947051099,2.43317435151318,0.4726740858203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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=205428 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28490 | |||
|TSSclassifier=W | |||
|UniProt=Q8NDZ4,B3KTD4 | |||
|association_with_transcript=265bp_to_ENST00000315691,NM_173552,uc003evo.2_5end | |||
|description=CAGE_peak_3_at_C3orf58_5end | |||
|id=chr3:143690905..143690921,+ | |||
|ontology_enrichment_celltype=CL:0002031!8.66e-11!124;CL:0000738!1.71e-09!140;CL:0002087!5.10e-09!119;CL:0000839!1.00e-08!70;CL:0000557!2.90e-08!71;CL:0000037!5.23e-08!172;CL:0000566!5.23e-08!172;CL:0000860!1.09e-07!45;CL:0000988!1.21e-07!182;CL:0002009!2.17e-07!65;CL:0000766!3.08e-07!76;CL:0002032!3.55e-07!165;CL:0000837!3.55e-07!165;CL:0002057!4.79e-07!42;CL:0002194!5.36e-07!63;CL:0000576!5.36e-07!63;CL:0000040!5.36e-07!63;CL:0000559!5.36e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.30e-07;33!CL:0002057;9.30e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,4.09e-10,120;CL:0000738,2.41e-09,136;CL:0002087,3.28e-08,115;CL:0000839,4.80e-08,66;CL:0000557,1.38e-07,67;CL:0000037,2.12e-07,168;CL:0000473,4.01e-07,48;CL:0000234,4.01e-07,48;CL:0000860,5.08e-07,42;CL:0002057,5.08e-07,42;CL:0000766,5.48e-07,72;CL:0000988,5.58e-07,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!1.78e-11!59;UBERON:0001049!6.70e-11!57;UBERON:0005068!6.70e-11!57;UBERON:0006241!6.70e-11!57;UBERON:0007135!6.70e-11!57;UBERON:0000955!1.74e-10!69;UBERON:0006238!1.74e-10!69;UBERON:0003080!2.35e-09!42;UBERON:0002780!5.10e-09!41;UBERON:0001890!5.10e-09!41;UBERON:0006240!5.10e-09!41;UBERON:0001017!9.68e-09!82;UBERON:0007023!4.74e-08!115;UBERON:0001893!8.92e-08!34;UBERON:0005743!1.14e-07!86;UBERON:0002791!2.20e-07!33;UBERON:0002405!2.24e-07!115;UBERON:0003075!2.28e-07!86;UBERON:0007284!2.28e-07!86;UBERON:0002020!4.81e-07!34;UBERON:0003528!4.81e-07!34;UBERON:0000073!5.02e-07!94;UBERON:0001016!5.02e-07!94;UBERON:0001869!8.47e-07!32;UBERON:0001474!8.52e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.45e-07;41!UBERON:0001890;3.45e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.23e-10,56;UBERON:0005068,1.23e-10,56;UBERON:0006241,1.23e-10,56;UBERON:0007135,1.23e-10,56;UBERON:0000073,2.02e-10,53;UBERON:0002616,2.02e-10,53;UBERON:0000955,2.34e-10,68;UBERON:0006238,2.34e-10,68;UBERON:0002780,5.46e-09,41;UBERON:0001890,5.46e-09,41;UBERON:0003080,5.46e-09,41;UBERON:0006240,5.46e-09,41;UBERON:0001017,1.12e-08,81;UBERON:0003075,4.76e-08,82;UBERON:0007284,4.76e-08,82;UBERON:0001893,5.74e-08,34;UBERON:0007023,6.82e-08,114;UBERON:0001016,8.36e-08,89;UBERON:0003528,3.31e-07,34;UBERON:0002020,3.31e-07,34;UBERON:0002791,5.02e-07,32;UBERON:0001869,6.01e-07,32 | |||
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| |||
|short_description=p3@C3orf58 | |||
}} |
Revision as of 21:54, 12 September 2013
Short description: | p3@C3orf58 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_C3orf58_5end |
Coexpression cluster: | NA |
Association with transcript: | 265bp_to_ENST00000315691, NM_173552, uc003evo.2_5end |
EntrezGene: | C3orf58 |
HGNC: | 28490 |
UniProt: | Q8NDZ4B3KTD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 4.09e-10 | 120 |
leukocyte | 2.41e-09 | 136 |
nongranular leukocyte | 3.28e-08 | 115 |
myeloid lineage restricted progenitor cell | 4.80e-08 | 66 |
granulocyte monocyte progenitor cell | 1.38e-07 | 67 |
hematopoietic stem cell | 2.12e-07 | 168 |
defensive cell | 4.01e-07 | 48 |
phagocyte | 4.01e-07 | 48 |
classical monocyte | 5.08e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.08e-07 | 42 |
myeloid leukocyte | 5.48e-07 | 72 |
hematopoietic cell | 5.58e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.23e-10 | 56 |
neural rod | 1.23e-10 | 56 |
future spinal cord | 1.23e-10 | 56 |
neural keel | 1.23e-10 | 56 |
regional part of nervous system | 2.02e-10 | 53 |
regional part of brain | 2.02e-10 | 53 |
brain | 2.34e-10 | 68 |
future brain | 2.34e-10 | 68 |
regional part of forebrain | 5.46e-09 | 41 |
forebrain | 5.46e-09 | 41 |
anterior neural tube | 5.46e-09 | 41 |
future forebrain | 5.46e-09 | 41 |
central nervous system | 1.12e-08 | 81 |
neural plate | 4.76e-08 | 82 |
presumptive neural plate | 4.76e-08 | 82 |
telencephalon | 5.74e-08 | 34 |
adult organism | 6.82e-08 | 114 |
nervous system | 8.36e-08 | 89 |
brain grey matter | 3.31e-07 | 34 |
gray matter | 3.31e-07 | 34 |
regional part of telencephalon | 5.02e-07 | 32 |
cerebral hemisphere | 6.01e-07 | 32 |
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