FFCP PHASE1:Mm9::chr4:34841043..34841065,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12640|HGNC=|MCL_coexpression_id=84|UniProt=P01216,A2AVN2|association_with_transcript=6bp_to_ENSMUST00000108130,ENSMUST00000135871_5end|description=CAGE_peak_2_at_Cga_5end|id=chr4:34841043..34841065,+|ontology_enrichment_celltype=CL:0002613!1.59e-08!3|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000007!6.43e-24!8;UBERON:0003296!6.43e-24!8;UBERON:0010133!6.43e-24!8;UBERON:0001894!7.59e-19!10;UBERON:0006222!7.59e-19!10;UBERON:0003056!2.78e-10!49;UBERON:0003080!9.50e-10!40;UBERON:0002780!1.54e-08!39;UBERON:0001890!1.54e-08!39;UBERON:0006240!1.54e-08!39;UBERON:0002616!1.88e-07!49;UBERON:0000033!2.85e-07!63;UBERON:0000955!3.01e-07!50;UBERON:0006238!3.01e-07!50;UBERON:0002346!4.75e-07!71;UBERON:0003075!4.75e-07!71;UBERON:0007284!4.75e-07!71;UBERON:0007811!5.92e-07!86;UBERON:0001049!7.26e-07!52;UBERON:0005068!7.26e-07!52;UBERON:0006241!7.26e-07!52;UBERON:0007135!7.26e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0000007,4.51e-70,8;UBERON:0003296,4.51e-70,8;UBERON:0010133,4.51e-70,8;UBERON:0001894,4.68e-56,10;UBERON:0006222,4.68e-56,10;UBERON:0002780,6.99e-18,39;UBERON:0001890,6.99e-18,39;UBERON:0006240,6.99e-18,39;UBERON:0003056,1.81e-17,49;UBERON:0003080,2.00e-17,40;UBERON:0002616,4.23e-15,46;UBERON:0000955,9.04e-15,47;UBERON:0006238,9.04e-15,47;UBERON:0001049,2.62e-13,52;UBERON:0005068,2.62e-13,52;UBERON:0006241,2.62e-13,52;UBERON:0007135,2.62e-13,52;UBERON:0002346,2.86e-13,64;UBERON:0003075,2.86e-13,64;UBERON:0007284,2.86e-13,64;UBERON:0000073,8.48e-13,54;UBERON:0010371,1.42e-11,73;UBERON:0001017,2.47e-09,73;UBERON:0002368,4.35e-09,60;UBERON:0001016,4.53e-09,75;UBERON:0010314,4.56e-09,92;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0002530,2.37e-08,65;UBERON:0000949,1.72e-07,72|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0.0914876436024097,0.52091337055676,0,0,1.22238598221448,0,0,0,0.681535739998656,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0,0,0,0,0,0,0,0,0,2.08192708740326,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,973.657272455834,11.3438489239725,24.0607151835923,34.9369367101495,57.1035552328121,71.1691582232261,92.9701966401984,204.295980855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0,0.350630706544707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0,0.183843508450014,0.222246727801615,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0,0,0,0|short_description=p2@Cga}} | ||
|EntrezGene=12640 | |||
|HGNC= | |||
|MCL_coexpression_id=84 | |||
|UniProt=P01216,A2AVN2 | |||
|association_with_transcript=6bp_to_ENSMUST00000108130,ENSMUST00000135871_5end | |||
|description=CAGE_peak_2_at_Cga_5end | |||
|id=chr4:34841043..34841065,+ | |||
|ontology_enrichment_celltype=CL:0002613!1.59e-08!3 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000007!6.43e-24!8;UBERON:0003296!6.43e-24!8;UBERON:0010133!6.43e-24!8;UBERON:0001894!7.59e-19!10;UBERON:0006222!7.59e-19!10;UBERON:0003056!2.78e-10!49;UBERON:0003080!9.50e-10!40;UBERON:0002780!1.54e-08!39;UBERON:0001890!1.54e-08!39;UBERON:0006240!1.54e-08!39;UBERON:0002616!1.88e-07!49;UBERON:0000033!2.85e-07!63;UBERON:0000955!3.01e-07!50;UBERON:0006238!3.01e-07!50;UBERON:0002346!4.75e-07!71;UBERON:0003075!4.75e-07!71;UBERON:0007284!4.75e-07!71;UBERON:0007811!5.92e-07!86;UBERON:0001049!7.26e-07!52;UBERON:0005068!7.26e-07!52;UBERON:0006241!7.26e-07!52;UBERON:0007135!7.26e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,4.51e-70,8;UBERON:0003296,4.51e-70,8;UBERON:0010133,4.51e-70,8;UBERON:0001894,4.68e-56,10;UBERON:0006222,4.68e-56,10;UBERON:0002780,6.99e-18,39;UBERON:0001890,6.99e-18,39;UBERON:0006240,6.99e-18,39;UBERON:0003056,1.81e-17,49;UBERON:0003080,2.00e-17,40;UBERON:0002616,4.23e-15,46;UBERON:0000955,9.04e-15,47;UBERON:0006238,9.04e-15,47;UBERON:0001049,2.62e-13,52;UBERON:0005068,2.62e-13,52;UBERON:0006241,2.62e-13,52;UBERON:0007135,2.62e-13,52;UBERON:0002346,2.86e-13,64;UBERON:0003075,2.86e-13,64;UBERON:0007284,2.86e-13,64;UBERON:0000073,8.48e-13,54;UBERON:0010371,1.42e-11,73;UBERON:0001017,2.47e-09,73;UBERON:0002368,4.35e-09,60;UBERON:0001016,4.53e-09,75;UBERON:0010314,4.56e-09,92;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0002530,2.37e-08,65;UBERON:0000949,1.72e-07,72 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131886287730194,0.0914876436024097,0.52091337055676,0,0,1.22238598221448,0,0,0,0.681535739998656,0.226714680320357,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0,0,0,0,0,0,0,0,0,2.08192708740326,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,973.657272455834,11.3438489239725,24.0607151835923,34.9369367101495,57.1035552328121,71.1691582232261,92.9701966401984,204.295980855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0,0.350630706544707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0,0.183843508450014,0.222246727801615,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0,0,0,0 | |||
|short_description=p2@Cga | |||
}} |
Revision as of 04:53, 14 September 2013
Short description: | p2@Cga |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cga_5end |
Coexpression cluster: | MCL_coexpression_mm9:84 |
Association with transcript: | 6bp_to_ENSMUST00000108130, ENSMUST00000135871_5end |
EntrezGene: | Cga |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pituitary gland | 4.51e-70 | 8 |
gland of diencephalon | 4.51e-70 | 8 |
neuroendocrine gland | 4.51e-70 | 8 |
diencephalon | 4.68e-56 | 10 |
future diencephalon | 4.68e-56 | 10 |
regional part of forebrain | 6.99e-18 | 39 |
forebrain | 6.99e-18 | 39 |
future forebrain | 6.99e-18 | 39 |
pre-chordal neural plate | 1.81e-17 | 49 |
anterior neural tube | 2.00e-17 | 40 |
regional part of brain | 4.23e-15 | 46 |
brain | 9.04e-15 | 47 |
future brain | 9.04e-15 | 47 |
neural tube | 2.62e-13 | 52 |
neural rod | 2.62e-13 | 52 |
future spinal cord | 2.62e-13 | 52 |
neural keel | 2.62e-13 | 52 |
neurectoderm | 2.86e-13 | 64 |
neural plate | 2.86e-13 | 64 |
presumptive neural plate | 2.86e-13 | 64 |
regional part of nervous system | 8.48e-13 | 54 |
ecto-epithelium | 1.42e-11 | 73 |
central nervous system | 2.47e-09 | 73 |
endocrine gland | 4.35e-09 | 60 |
nervous system | 4.53e-09 | 75 |
structure with developmental contribution from neural crest | 4.56e-09 | 92 |
ectoderm-derived structure | 9.21e-09 | 95 |
ectoderm | 9.21e-09 | 95 |
presumptive ectoderm | 9.21e-09 | 95 |
gland | 2.37e-08 | 65 |
endocrine system | 1.72e-07 | 72 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.