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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007865
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251
Line 41: Line 42:
|is_a=CL:0002563;;EFO:0002091;;FF:0000210;;FF:0100003
|is_a=CL:0002563;;EFO:0002091;;FF:0000210;;FF:0100003
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11950
|name=normal intestinal epithelial cell line:FHs 74 Int
|name=normal intestinal epithelial cell line:FHs 74 Int
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=NKX3-1:2.21743245631;GZF1:2.16889734094;ESR1:2.08750006099;UFEwm:1.97796793424;MYBL2:1.68112540702;HOXA9_MEIS1:1.54541544475;HMGA1,2:1.4863308352;ALX4:1.44871893492;NKX2-2,8:1.39788640193;PAX4:1.37236284738;TBX4,5:1.36015334927;EBF1:1.30816916569;FOXL1:1.30661091081;RXR{A,B,G}:1.27066237819;TFAP4:1.26630204427;TFCP2:1.20798317175;TEF:1.09820514386;HMX1:1.0880805689;NFE2L1:1.06746209611;GTF2A1,2:1.06533870135;EVI1:1.0346397435;FOX{I1,J2}:1.00392522525;IRF1,2:0.999783937989;TEAD1:0.942138338047;TP53:0.927817982908;TLX1..3_NFIC{dimer}:0.922068864473;KLF4:0.884107486519;HES1:0.854411157613;NR3C1:0.81812429354;NANOG{mouse}:0.816257042288;ARID5B:0.813164881366;SRF:0.810480977158;TAL1_TCF{3,4,12}:0.761534052245;HSF1,2:0.745306023888;NR5A1,2:0.727943388939;HAND1,2:0.698911678954;LHX3,4:0.695379614329;ZIC1..3:0.64106127498;FOX{F1,F2,J1}:0.62339274205;PAX5:0.619083940261;ZNF423:0.615057367695;TBP:0.601357999292;ZBTB6:0.598245778831;EN1,2:0.592984533;NFIX:0.576416219822;YY1:0.573111033404;PAX1,9:0.542044817193;DBP:0.511705656069;MYFfamily:0.504199074882;MAFB:0.484600300733;IKZF1:0.473168680992;LMO2:0.464113822183;MAZ:0.457278623555;CDC5L:0.438633795081;NR6A1:0.430590212068;GLI1..3:0.430539127589;TFAP2{A,C}:0.413630700014;MTE{core}:0.410941615625;NKX6-1,2:0.39782818872;AIRE:0.393852258387;GTF2I:0.385883251425;ZNF238:0.37677114941;POU6F1:0.347115486782;IRF7:0.306867087913;GFI1B:0.248756922163;HOX{A4,D4}:0.242361618978;HIC1:0.238678812926;SOX5:0.228286668519;TFAP2B:0.212636270681;PRDM1:0.206786233626;NFE2L2:0.203951660546;STAT1,3:0.166236890312;STAT5{A,B}:0.137468129663;CDX1,2,4:0.135510396011;RXRA_VDR{dimer}:0.105410899135;PATZ1:0.103625209875;FOXO1,3,4:0.0970558700949;MTF1:0.0910019341576;SOX17:0.0809829933908;PAX8:0.037860005326;HNF1A:0.0126761155404;FOXN1:0.00938614093196;SPZ1:0.0084702034078;FOXP1:0.00761835309591;XCPE1{core}:-0.00522679493305;ATF6:-0.00771871465851;FOXD3:-0.026237535162;FOX{D1,D2}:-0.0285147752616;IKZF2:-0.0373445802408;SP1:-0.0476704724614;NFATC1..3:-0.0897079009097;TOPORS:-0.096186160412;XBP1:-0.0994408280516;HNF4A_NR2F1,2:-0.110025264357;REST:-0.114027378061;GCM1,2:-0.133849541136;STAT2,4,6:-0.137922412299;MEF2{A,B,C,D}:-0.142124851186;NKX3-2:-0.166537108479;RREB1:-0.176082582589;AHR_ARNT_ARNT2:-0.189688843042;MZF1:-0.207551315498;NFE2:-0.220019527867;GFI1:-0.222222479394;MED-1{core}:-0.225334408007;OCT4_SOX2{dimer}:-0.228630665467;BACH2:-0.23793050445;PAX6:-0.238977548748;T:-0.252758947171;NHLH1,2:-0.272336053338;SOX2:-0.28797378728;HLF:-0.296594807904;GATA4:-0.298885245081;PPARG:-0.311166989297;NFKB1_REL_RELA:-0.312303452317;PAX3,7:-0.312584161488;TFDP1:-0.314077950858;CEBPA,B_DDIT3:-0.320730456878;ONECUT1,2:-0.323504260565;ZFP161:-0.326211685611;HIF1A:-0.326702497158;BPTF:-0.335330280179;ZNF143:-0.364143075291;FOXA2:-0.368838247134;ELK1,4_GABP{A,B1}:-0.381643917397;AR:-0.391543182062;MYB:-0.395296142422;FOS_FOS{B,L1}_JUN{B,D}:-0.40590954953;ZBTB16:-0.407135544179;E2F1..5:-0.411896026942;HOX{A5,B5}:-0.430282082453;RFX1:-0.440227681323;MYOD1:-0.442527726085;SPIB:-0.443274247549;LEF1_TCF7_TCF7L1,2:-0.445661182767;POU5F1:-0.451868267123;PBX1:-0.462110956556;FOSL2:-0.463798133832;TGIF1:-0.495404607606;ZNF148:-0.498425075656;SMAD1..7,9:-0.50661862264;PITX1..3:-0.51494934882;ZNF384:-0.534750187303;POU1F1:-0.543108053636;FOXQ1:-0.557887517323;PAX2:-0.563367521105;DMAP1_NCOR{1,2}_SMARC:-0.56823546855;NR1H4:-0.570158347448;EGR1..3:-0.593688893617;RORA:-0.595385649217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.604488229963;HOX{A6,A7,B6,B7}:-0.62167731845;ETS1,2:-0.636242685698;SNAI1..3:-0.642749647709;RUNX1..3:-0.646249824721;ESRRA:-0.664415175225;ATF2:-0.674090955019;PRRX1,2:-0.689470746711;NRF1:-0.702946400131;POU2F1..3:-0.707972538826;SPI1:-0.755548495014;bHLH_family:-0.760974628903;FOXM1:-0.76271559839;RFX2..5_RFXANK_RFXAP:-0.772735316596;CUX2:-0.817524464749;NKX2-1,4:-0.822037083432;ELF1,2,4:-0.873662467265;JUN:-0.878730050905;ATF4:-0.888200701433;NFIL3:-0.913043420836;CREB1:-0.934611871406;TLX2:-0.93545654137;FOXP3:-0.939308782898;SREBF1,2:-0.941929889679;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.978270752294;ZEB1:-0.980488957966;ATF5_CREB3:-1.00409389707;VSX1,2:-1.01439514377;PDX1:-1.02446430128;NFY{A,B,C}:-1.03197524901;SOX{8,9,10}:-1.05132144775;RBPJ:-1.05312261561;NKX2-3_NKX2-5:-1.07242433485;HBP1_HMGB_SSRP1_UBTF:-1.09125845337;GATA6:-1.11212491769;ADNP_IRX_SIX_ZHX:-1.19490233651;POU3F1..4:-1.29766967558;CRX:-1.35183092568;EP300:-1.40631718988;ALX1:-1.45861270008;BREu{core}:-1.61006943543;NANOG:-2.56805540244
|top_motifs=NKX3-1:2.21743245631;GZF1:2.16889734094;ESR1:2.08750006099;UFEwm:1.97796793424;MYBL2:1.68112540702;HOXA9_MEIS1:1.54541544475;HMGA1,2:1.4863308352;ALX4:1.44871893492;NKX2-2,8:1.39788640193;PAX4:1.37236284738;TBX4,5:1.36015334927;EBF1:1.30816916569;FOXL1:1.30661091081;RXR{A,B,G}:1.27066237819;TFAP4:1.26630204427;TFCP2:1.20798317175;TEF:1.09820514386;HMX1:1.0880805689;NFE2L1:1.06746209611;GTF2A1,2:1.06533870135;EVI1:1.0346397435;FOX{I1,J2}:1.00392522525;IRF1,2:0.999783937989;TEAD1:0.942138338047;TP53:0.927817982908;TLX1..3_NFIC{dimer}:0.922068864473;KLF4:0.884107486519;HES1:0.854411157613;NR3C1:0.81812429354;NANOG{mouse}:0.816257042288;ARID5B:0.813164881366;SRF:0.810480977158;TAL1_TCF{3,4,12}:0.761534052245;HSF1,2:0.745306023888;NR5A1,2:0.727943388939;HAND1,2:0.698911678954;LHX3,4:0.695379614329;ZIC1..3:0.64106127498;FOX{F1,F2,J1}:0.62339274205;PAX5:0.619083940261;ZNF423:0.615057367695;TBP:0.601357999292;ZBTB6:0.598245778831;EN1,2:0.592984533;NFIX:0.576416219822;YY1:0.573111033404;PAX1,9:0.542044817193;DBP:0.511705656069;MYFfamily:0.504199074882;MAFB:0.484600300733;IKZF1:0.473168680992;LMO2:0.464113822183;MAZ:0.457278623555;CDC5L:0.438633795081;NR6A1:0.430590212068;GLI1..3:0.430539127589;TFAP2{A,C}:0.413630700014;MTE{core}:0.410941615625;NKX6-1,2:0.39782818872;AIRE:0.393852258387;GTF2I:0.385883251425;ZNF238:0.37677114941;POU6F1:0.347115486782;IRF7:0.306867087913;GFI1B:0.248756922163;HOX{A4,D4}:0.242361618978;HIC1:0.238678812926;SOX5:0.228286668519;TFAP2B:0.212636270681;PRDM1:0.206786233626;NFE2L2:0.203951660546;STAT1,3:0.166236890312;STAT5{A,B}:0.137468129663;CDX1,2,4:0.135510396011;RXRA_VDR{dimer}:0.105410899135;PATZ1:0.103625209875;FOXO1,3,4:0.0970558700949;MTF1:0.0910019341576;SOX17:0.0809829933908;PAX8:0.037860005326;HNF1A:0.0126761155404;FOXN1:0.00938614093196;SPZ1:0.0084702034078;FOXP1:0.00761835309591;XCPE1{core}:-0.00522679493305;ATF6:-0.00771871465851;FOXD3:-0.026237535162;FOX{D1,D2}:-0.0285147752616;IKZF2:-0.0373445802408;SP1:-0.0476704724614;NFATC1..3:-0.0897079009097;TOPORS:-0.096186160412;XBP1:-0.0994408280516;HNF4A_NR2F1,2:-0.110025264357;REST:-0.114027378061;GCM1,2:-0.133849541136;STAT2,4,6:-0.137922412299;MEF2{A,B,C,D}:-0.142124851186;NKX3-2:-0.166537108479;RREB1:-0.176082582589;AHR_ARNT_ARNT2:-0.189688843042;MZF1:-0.207551315498;NFE2:-0.220019527867;GFI1:-0.222222479394;MED-1{core}:-0.225334408007;OCT4_SOX2{dimer}:-0.228630665467;BACH2:-0.23793050445;PAX6:-0.238977548748;T:-0.252758947171;NHLH1,2:-0.272336053338;SOX2:-0.28797378728;HLF:-0.296594807904;GATA4:-0.298885245081;PPARG:-0.311166989297;NFKB1_REL_RELA:-0.312303452317;PAX3,7:-0.312584161488;TFDP1:-0.314077950858;CEBPA,B_DDIT3:-0.320730456878;ONECUT1,2:-0.323504260565;ZFP161:-0.326211685611;HIF1A:-0.326702497158;BPTF:-0.335330280179;ZNF143:-0.364143075291;FOXA2:-0.368838247134;ELK1,4_GABP{A,B1}:-0.381643917397;AR:-0.391543182062;MYB:-0.395296142422;FOS_FOS{B,L1}_JUN{B,D}:-0.40590954953;ZBTB16:-0.407135544179;E2F1..5:-0.411896026942;HOX{A5,B5}:-0.430282082453;RFX1:-0.440227681323;MYOD1:-0.442527726085;SPIB:-0.443274247549;LEF1_TCF7_TCF7L1,2:-0.445661182767;POU5F1:-0.451868267123;PBX1:-0.462110956556;FOSL2:-0.463798133832;TGIF1:-0.495404607606;ZNF148:-0.498425075656;SMAD1..7,9:-0.50661862264;PITX1..3:-0.51494934882;ZNF384:-0.534750187303;POU1F1:-0.543108053636;FOXQ1:-0.557887517323;PAX2:-0.563367521105;DMAP1_NCOR{1,2}_SMARC:-0.56823546855;NR1H4:-0.570158347448;EGR1..3:-0.593688893617;RORA:-0.595385649217;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.604488229963;HOX{A6,A7,B6,B7}:-0.62167731845;ETS1,2:-0.636242685698;SNAI1..3:-0.642749647709;RUNX1..3:-0.646249824721;ESRRA:-0.664415175225;ATF2:-0.674090955019;PRRX1,2:-0.689470746711;NRF1:-0.702946400131;POU2F1..3:-0.707972538826;SPI1:-0.755548495014;bHLH_family:-0.760974628903;FOXM1:-0.76271559839;RFX2..5_RFXANK_RFXAP:-0.772735316596;CUX2:-0.817524464749;NKX2-1,4:-0.822037083432;ELF1,2,4:-0.873662467265;JUN:-0.878730050905;ATF4:-0.888200701433;NFIL3:-0.913043420836;CREB1:-0.934611871406;TLX2:-0.93545654137;FOXP3:-0.939308782898;SREBF1,2:-0.941929889679;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.978270752294;ZEB1:-0.980488957966;ATF5_CREB3:-1.00409389707;VSX1,2:-1.01439514377;PDX1:-1.02446430128;NFY{A,B,C}:-1.03197524901;SOX{8,9,10}:-1.05132144775;RBPJ:-1.05312261561;NKX2-3_NKX2-5:-1.07242433485;HBP1_HMGB_SSRP1_UBTF:-1.09125845337;GATA6:-1.11212491769;ADNP_IRX_SIX_ZHX:-1.19490233651;POU3F1..4:-1.29766967558;CRX:-1.35183092568;EP300:-1.40631718988;ALX1:-1.45861270008;BREu{core}:-1.61006943543;NANOG:-2.56805540244
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007865
|accession_numbers=DRX007971;DRR008843;DRZ000268;DRZ001653;CAGE
|library_id=CNhs11950
}}
}}

Revision as of 18:24, 16 October 2013


Name:normal intestinal epithelial cell line:FHs 74 Int
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:cell lines
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuesmall intestine
dev stageNA
sexfemale
agefetal
cell typeepithelial cell, intestinal
cell lineFHs 74 Int
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007865
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.003
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.109
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.723
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.116
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.129
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0272
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.538
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.56
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.116
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0453
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0796
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.995
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.575
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.154
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.115
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.639
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.645
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0675
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.748
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.207
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11950

Jaspar motifP-value
MA0002.20.395
MA0003.10.251
MA0004.10.0273
MA0006.10.088
MA0007.10.52
MA0009.10.958
MA0014.10.724
MA0017.10.927
MA0018.23.39501e-7
MA0019.10.644
MA0024.10.00654
MA0025.18.20993e-4
MA0027.10.885
MA0028.10.00323
MA0029.10.503
MA0030.10.426
MA0031.10.0892
MA0035.20.555
MA0038.10.119
MA0039.20.0416
MA0040.10.201
MA0041.10.968
MA0042.10.229
MA0043.11.50361e-6
MA0046.10.393
MA0047.20.751
MA0048.10.351
MA0050.12.705e-8
MA0051.15.02121e-6
MA0052.10.503
MA0055.10.162
MA0057.10.0926
MA0058.10.00111
MA0059.10.461
MA0060.12.13449e-9
MA0061.10.381
MA0062.25.10221e-9
MA0065.20.147
MA0066.10.354
MA0067.10.00519
MA0068.10.736
MA0069.10.294
MA0070.10.372
MA0071.10.397
MA0072.10.823
MA0073.10.804
MA0074.10.255
MA0076.11.97872e-4
MA0077.10.645
MA0078.10.913
MA0079.20.89
MA0080.24.62472e-8
MA0081.10.0213
MA0083.10.123
MA0084.10.749
MA0087.10.953
MA0088.10.513
MA0090.10.00432
MA0091.10.00346
MA0092.10.452
MA0093.10.0169
MA0099.22.65772e-6
MA0100.10.0758
MA0101.10.0101
MA0102.20.391
MA0103.10.0718
MA0104.20.00536
MA0105.10.646
MA0106.10.294
MA0107.10.0663
MA0108.20.585
MA0111.10.987
MA0112.20.00943
MA0113.10.914
MA0114.10.688
MA0115.10.238
MA0116.10.0506
MA0117.10.107
MA0119.10.0266
MA0122.10.334
MA0124.10.0127
MA0125.10.0511
MA0131.10.0908
MA0135.10.0216
MA0136.12.45155e-12
MA0137.20.735
MA0138.20.276
MA0139.10.581
MA0140.10.545
MA0141.10.259
MA0142.10.785
MA0143.10.496
MA0144.10.705
MA0145.10.103
MA0146.10.566
MA0147.10.0271
MA0148.10.993
MA0149.10.483
MA0150.10.0142
MA0152.10.981
MA0153.10.922
MA0154.10.206
MA0155.10.109
MA0156.11.13956e-9
MA0157.10.249
MA0159.10.276
MA0160.10.816
MA0162.10.034
MA0163.10.00571
MA0164.10.794
MA0258.10.0211
MA0259.10.0623



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11950

Novel motifP-value
10.983
100.872
1000.249
1010.249
1020.316
1030.203
1040.679
1050.102
1060.0192
1070.013
1080.207
1090.0736
110.352
1100.38
1110.766
1120.219
1130.555
1140.196
1150.0014
1160.0188
1170.637
1180.547
1190.239
120.265
1200.338
1210.0674
1220.0369
1230.362
1240.477
1250.86
1260.958
1270.994
1280.0295
1290.139
130.77
1300.708
1310.676
1320.37
1330.922
1340.829
1350.675
1360.229
1370.09
1380.952
1390.577
140.236
1400.86
1410.82
1420.759
1430.959
1440.552
1450.444
1460.72
1470.23
1480.419
1490.0216
150.504
1500.314
1510.411
1520.00342
1530.372
1540.542
1550.0795
1560.694
1570.264
1580.00486
1590.648
160.0471
1600.799
1610.935
1620.661
1630.304
1640.0867
1650.468
1660.0236
1670.893
1680.898
1690.0379
170.471
180.355
190.02
20.26
200.184
210.123
220.438
230.267
240.844
250.495
260.191
270.249
280.194
290.39
30.404
300.506
310.463
321.19795e-14
330.591
340.697
350.507
360.105
370.175
380.72
390.478
40.289
400.733
410.293
420.761
430.217
440.015
450.711
460.265
470.478
480.962
490.943
50.875
500.502
510.45
520.604
530.313
540.603
550.253
560.718
570.533
580.812
590.0101
60.871
600.796
610.419
620.494
630.375
640.915
650.412
660.184
670.503
680.598
690.344
70.483
700.125
710.104
720.637
730.00444
740.734
750.818
760.847
770.0183
780.439
797.9524e-4
80.0945
800.0705
810.537
820.201
830.811
840.913
850.0216
860.656
870.266
880.9
890.165
90.46
900.664
910.5
920.356
930.0842
940.644
950.0428
960.918
970.773
980.744
993.39551e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11950


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100003 (intestinal cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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