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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007942
|DRA_sample_Accession=CAGE@DRS007942
|accession_numbers=CAGE;DRX008049;DRR008921;DRZ000346;DRZ001731
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0011100
|is_a=EFO:0002091;;FF:0011100
|is_obsolete=
|is_obsolete=
|library_id=CNhs13229
|library_ids=CNhs13229
|library_ids=CNhs13229
|name=CD14-CD16+ Monocytes, donor1
|name=CD14-CD16+ Monocytes, donor1
Line 87: Line 89:
|top_motifs=SPI1:2.46882602174;HMX1:2.35197452653;SPIB:2.24215881052;NANOG{mouse}:2.12266699343;HES1:2.01957094943;IRF1,2:1.97697678393;NFIL3:1.92407679916;ETS1,2:1.89779047285;CREB1:1.71227606758;ATF5_CREB3:1.70372385498;DMAP1_NCOR{1,2}_SMARC:1.69173682372;FOX{I1,J2}:1.6418614782;PAX2:1.57621510659;IRF7:1.50911112457;FOXO1,3,4:1.46444726554;TGIF1:1.45932039874;ELF1,2,4:1.44344989224;FOXN1:1.43972219788;SREBF1,2:1.35780557035;EP300:1.31850041441;RUNX1..3:1.31788352509;RFX2..5_RFXANK_RFXAP:1.2782372304;ESRRA:1.25430535661;ATF4:1.20705515453;MAFB:1.05397000039;FOX{F1,F2,J1}:1.01109821426;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.969165606413;FOX{D1,D2}:0.794248076154;ZNF148:0.762021257672;NR6A1:0.757122210347;GLI1..3:0.751752302207;NFKB1_REL_RELA:0.748766771211;TLX2:0.724776118066;NR5A1,2:0.713822829131;T:0.706567891599;FOXA2:0.705670516578;HIF1A:0.670332093207;JUN:0.665105093206;POU5F1:0.657844994581;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.62580841222;PAX3,7:0.614999328371;NKX2-2,8:0.610960594891;ALX1:0.598734832074;CEBPA,B_DDIT3:0.584940582456;ELK1,4_GABP{A,B1}:0.562079439036;FOXP1:0.499331752237;TAL1_TCF{3,4,12}:0.492160600595;FOXP3:0.460454520841;ATF2:0.449899862646;HBP1_HMGB_SSRP1_UBTF:0.373492636826;ESR1:0.367917992839;RXRA_VDR{dimer}:0.355625167018;FOSL2:0.354389037963;FOXQ1:0.314604045035;HLF:0.311107109723;PAX8:0.299566454609;OCT4_SOX2{dimer}:0.288656505661;BPTF:0.284762838548;ATF6:0.284078200784;MEF2{A,B,C,D}:0.237130817019;TOPORS:0.212707034387;TFCP2:0.20780821931;RFX1:0.200231757367;EBF1:0.182389357581;CRX:0.162999325014;BACH2:0.143872114395;GATA6:0.11739363134;ALX4:0.0930014315836;HMGA1,2:0.0915651312425;PAX4:0.0654208746914;POU2F1..3:0.0583696302672;TFAP4:0.0542539756893;STAT2,4,6:0.03261299731;NFIX:0.0180448488085;NR1H4:0.0148973785475;RORA:0.00412787350547;RBPJ:-0.00171624091078;FOS_FOS{B,L1}_JUN{B,D}:-0.0041915988264;HNF4A_NR2F1,2:-0.010568548921;CDX1,2,4:-0.0109090422297;HOX{A5,B5}:-0.0138852878064;NFE2L2:-0.0222485272897;PITX1..3:-0.0322599594639;EN1,2:-0.0545443109546;IKZF2:-0.0658969679261;PBX1:-0.085099078371;NFE2:-0.10522049154;MYB:-0.191568271801;XBP1:-0.197099942413;PDX1:-0.202903476367;NANOG:-0.204927511844;POU1F1:-0.216783197286;VSX1,2:-0.280570274605;SOX2:-0.289703769693;GATA4:-0.296286899761;HOXA9_MEIS1:-0.311187494165;AR:-0.312506239825;AHR_ARNT_ARNT2:-0.32412022997;AIRE:-0.333258541026;MYOD1:-0.336776708303;NFE2L1:-0.339036164929;ZBTB16:-0.360715585923;GZF1:-0.362618075234;SOX{8,9,10}:-0.366851351944;PPARG:-0.369443433502;FOXL1:-0.396120766862;PRRX1,2:-0.396351969504;NHLH1,2:-0.413345650794;NKX2-3_NKX2-5:-0.47354716055;CUX2:-0.480202277975;FOXD3:-0.54160820078;ONECUT1,2:-0.554102067945;SRF:-0.584262173182;BREu{core}:-0.586404311815;HOX{A6,A7,B6,B7}:-0.599580474768;STAT1,3:-0.60691165831;DBP:-0.61945880049;HOX{A4,D4}:-0.626700033801;MTF1:-0.6558111848;HNF1A:-0.658512672823;REST:-0.676388457148;MYFfamily:-0.677428500722;PRDM1:-0.684667576672;HSF1,2:-0.694306408403;NFY{A,B,C}:-0.696780156217;EGR1..3:-0.708947570896;ADNP_IRX_SIX_ZHX:-0.708995995181;SOX5:-0.712357985191;TFAP2{A,C}:-0.729582740044;PAX1,9:-0.739803760674;ZEB1:-0.800373592759;PAX5:-0.80603252703;E2F1..5:-0.831819562317;ZFP161:-0.84028850457;SP1:-0.857477338011;PAX6:-0.87950569301;STAT5{A,B}:-0.894287376169;TFAP2B:-0.910486058237;PATZ1:-0.931183704901;HAND1,2:-0.93364769638;YY1:-0.936939321784;ZNF238:-0.951353498203;TBP:-0.987340894443;LHX3,4:-0.988849368478;LEF1_TCF7_TCF7L1,2:-0.999322503567;ARID5B:-1.06560720342;NKX2-1,4:-1.08332805806;NKX6-1,2:-1.08424157375;RREB1:-1.09206655059;KLF4:-1.0973132298;NKX3-1:-1.0982078724;ZNF384:-1.09891307576;GFI1:-1.13434655586;SPZ1:-1.14013590286;RXR{A,B,G}:-1.15081025759;HIC1:-1.1530009665;SMAD1..7,9:-1.15523159782;TLX1..3_NFIC{dimer}:-1.18418904138;TP53:-1.18496173333;GFI1B:-1.21431641975;MTE{core}:-1.23404544621;SNAI1..3:-1.24350243172;MZF1:-1.24578161874;NRF1:-1.26504381433;LMO2:-1.26738301271;XCPE1{core}:-1.27633264361;ZIC1..3:-1.28620022434;NKX3-2:-1.28898619637;MED-1{core}:-1.29052578358;TEF:-1.30053789044;NR3C1:-1.30228290132;ZNF423:-1.32622242441;GTF2I:-1.34339787295;CDC5L:-1.37857899283;MYBL2:-1.41006852191;ZNF143:-1.41105671334;IKZF1:-1.43171328588;GCM1,2:-1.43803436385;ZBTB6:-1.4555354087;MAZ:-1.48510634688;POU6F1:-1.48666206939;bHLH_family:-1.50709858844;GTF2A1,2:-1.51409727057;EVI1:-1.52643422498;NFATC1..3:-1.54101390977;UFEwm:-1.55624007824;TEAD1:-1.55625755575;TFDP1:-1.62871253372;FOXM1:-1.75545824014;TBX4,5:-1.9318498385;SOX17:-2.22073654216;POU3F1..4:-2.95802425254
|top_motifs=SPI1:2.46882602174;HMX1:2.35197452653;SPIB:2.24215881052;NANOG{mouse}:2.12266699343;HES1:2.01957094943;IRF1,2:1.97697678393;NFIL3:1.92407679916;ETS1,2:1.89779047285;CREB1:1.71227606758;ATF5_CREB3:1.70372385498;DMAP1_NCOR{1,2}_SMARC:1.69173682372;FOX{I1,J2}:1.6418614782;PAX2:1.57621510659;IRF7:1.50911112457;FOXO1,3,4:1.46444726554;TGIF1:1.45932039874;ELF1,2,4:1.44344989224;FOXN1:1.43972219788;SREBF1,2:1.35780557035;EP300:1.31850041441;RUNX1..3:1.31788352509;RFX2..5_RFXANK_RFXAP:1.2782372304;ESRRA:1.25430535661;ATF4:1.20705515453;MAFB:1.05397000039;FOX{F1,F2,J1}:1.01109821426;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.969165606413;FOX{D1,D2}:0.794248076154;ZNF148:0.762021257672;NR6A1:0.757122210347;GLI1..3:0.751752302207;NFKB1_REL_RELA:0.748766771211;TLX2:0.724776118066;NR5A1,2:0.713822829131;T:0.706567891599;FOXA2:0.705670516578;HIF1A:0.670332093207;JUN:0.665105093206;POU5F1:0.657844994581;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.62580841222;PAX3,7:0.614999328371;NKX2-2,8:0.610960594891;ALX1:0.598734832074;CEBPA,B_DDIT3:0.584940582456;ELK1,4_GABP{A,B1}:0.562079439036;FOXP1:0.499331752237;TAL1_TCF{3,4,12}:0.492160600595;FOXP3:0.460454520841;ATF2:0.449899862646;HBP1_HMGB_SSRP1_UBTF:0.373492636826;ESR1:0.367917992839;RXRA_VDR{dimer}:0.355625167018;FOSL2:0.354389037963;FOXQ1:0.314604045035;HLF:0.311107109723;PAX8:0.299566454609;OCT4_SOX2{dimer}:0.288656505661;BPTF:0.284762838548;ATF6:0.284078200784;MEF2{A,B,C,D}:0.237130817019;TOPORS:0.212707034387;TFCP2:0.20780821931;RFX1:0.200231757367;EBF1:0.182389357581;CRX:0.162999325014;BACH2:0.143872114395;GATA6:0.11739363134;ALX4:0.0930014315836;HMGA1,2:0.0915651312425;PAX4:0.0654208746914;POU2F1..3:0.0583696302672;TFAP4:0.0542539756893;STAT2,4,6:0.03261299731;NFIX:0.0180448488085;NR1H4:0.0148973785475;RORA:0.00412787350547;RBPJ:-0.00171624091078;FOS_FOS{B,L1}_JUN{B,D}:-0.0041915988264;HNF4A_NR2F1,2:-0.010568548921;CDX1,2,4:-0.0109090422297;HOX{A5,B5}:-0.0138852878064;NFE2L2:-0.0222485272897;PITX1..3:-0.0322599594639;EN1,2:-0.0545443109546;IKZF2:-0.0658969679261;PBX1:-0.085099078371;NFE2:-0.10522049154;MYB:-0.191568271801;XBP1:-0.197099942413;PDX1:-0.202903476367;NANOG:-0.204927511844;POU1F1:-0.216783197286;VSX1,2:-0.280570274605;SOX2:-0.289703769693;GATA4:-0.296286899761;HOXA9_MEIS1:-0.311187494165;AR:-0.312506239825;AHR_ARNT_ARNT2:-0.32412022997;AIRE:-0.333258541026;MYOD1:-0.336776708303;NFE2L1:-0.339036164929;ZBTB16:-0.360715585923;GZF1:-0.362618075234;SOX{8,9,10}:-0.366851351944;PPARG:-0.369443433502;FOXL1:-0.396120766862;PRRX1,2:-0.396351969504;NHLH1,2:-0.413345650794;NKX2-3_NKX2-5:-0.47354716055;CUX2:-0.480202277975;FOXD3:-0.54160820078;ONECUT1,2:-0.554102067945;SRF:-0.584262173182;BREu{core}:-0.586404311815;HOX{A6,A7,B6,B7}:-0.599580474768;STAT1,3:-0.60691165831;DBP:-0.61945880049;HOX{A4,D4}:-0.626700033801;MTF1:-0.6558111848;HNF1A:-0.658512672823;REST:-0.676388457148;MYFfamily:-0.677428500722;PRDM1:-0.684667576672;HSF1,2:-0.694306408403;NFY{A,B,C}:-0.696780156217;EGR1..3:-0.708947570896;ADNP_IRX_SIX_ZHX:-0.708995995181;SOX5:-0.712357985191;TFAP2{A,C}:-0.729582740044;PAX1,9:-0.739803760674;ZEB1:-0.800373592759;PAX5:-0.80603252703;E2F1..5:-0.831819562317;ZFP161:-0.84028850457;SP1:-0.857477338011;PAX6:-0.87950569301;STAT5{A,B}:-0.894287376169;TFAP2B:-0.910486058237;PATZ1:-0.931183704901;HAND1,2:-0.93364769638;YY1:-0.936939321784;ZNF238:-0.951353498203;TBP:-0.987340894443;LHX3,4:-0.988849368478;LEF1_TCF7_TCF7L1,2:-0.999322503567;ARID5B:-1.06560720342;NKX2-1,4:-1.08332805806;NKX6-1,2:-1.08424157375;RREB1:-1.09206655059;KLF4:-1.0973132298;NKX3-1:-1.0982078724;ZNF384:-1.09891307576;GFI1:-1.13434655586;SPZ1:-1.14013590286;RXR{A,B,G}:-1.15081025759;HIC1:-1.1530009665;SMAD1..7,9:-1.15523159782;TLX1..3_NFIC{dimer}:-1.18418904138;TP53:-1.18496173333;GFI1B:-1.21431641975;MTE{core}:-1.23404544621;SNAI1..3:-1.24350243172;MZF1:-1.24578161874;NRF1:-1.26504381433;LMO2:-1.26738301271;XCPE1{core}:-1.27633264361;ZIC1..3:-1.28620022434;NKX3-2:-1.28898619637;MED-1{core}:-1.29052578358;TEF:-1.30053789044;NR3C1:-1.30228290132;ZNF423:-1.32622242441;GTF2I:-1.34339787295;CDC5L:-1.37857899283;MYBL2:-1.41006852191;ZNF143:-1.41105671334;IKZF1:-1.43171328588;GCM1,2:-1.43803436385;ZBTB6:-1.4555354087;MAZ:-1.48510634688;POU6F1:-1.48666206939;bHLH_family:-1.50709858844;GTF2A1,2:-1.51409727057;EVI1:-1.52643422498;NFATC1..3:-1.54101390977;UFEwm:-1.55624007824;TEAD1:-1.55625755575;TFDP1:-1.62871253372;FOXM1:-1.75545824014;TBX4,5:-1.9318498385;SOX17:-2.22073654216;POU3F1..4:-2.95802425254
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007942
|accession_numbers=DRX008049;DRR008921;DRZ000346;DRZ001731;CAGE
|library_id=CNhs13229
}}
}}

Revision as of 19:27, 17 October 2013


Name:CD14-CD16+ Monocytes, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13229
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age25
cell typemonocyte
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number9
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007942
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13229 CAGE DRX008049 DRR008921
Accession ID Hg19

Library idBAMCTSS
CNhs13229 DRZ000346 DRZ001731
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.137
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.338
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.147
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.109
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.109
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.33
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.22
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.196
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.5
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.262
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.358
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.433
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.196
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.165
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.257
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.109
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.428
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.192
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.883
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.268
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.258
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.616
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.551
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.185
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0489
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.546
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.637
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.432
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.616
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral1.141
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.496
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood1.156
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.33
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.561
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.196
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.196
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole1.098
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13229

Jaspar motifP-value
MA0002.25.51085e-8
MA0003.10.0853
MA0004.10.318
MA0006.10.952
MA0007.10.84
MA0009.10.427
MA0014.10.418
MA0017.10.013
MA0018.24.91465e-4
MA0019.10.57
MA0024.10.0193
MA0025.10.0074
MA0027.10.724
MA0028.10.118
MA0029.10.472
MA0030.10.11
MA0031.10.253
MA0035.20.907
MA0038.10.247
MA0039.20.127
MA0040.10.202
MA0041.10.614
MA0042.10.421
MA0043.12.59921e-4
MA0046.10.116
MA0047.20.0756
MA0048.10.63
MA0050.12.45535e-12
MA0051.15.5711e-6
MA0052.10.122
MA0055.10.723
MA0057.10.863
MA0058.10.153
MA0059.10.462
MA0060.10.00162
MA0061.10.00128
MA0062.22.60688e-7
MA0065.20.0133
MA0066.10.21
MA0067.12.29636e-4
MA0068.10.777
MA0069.10.621
MA0070.10.018
MA0071.10.0881
MA0072.10.336
MA0073.10.386
MA0074.10.41
MA0076.10.0816
MA0077.10.0693
MA0078.10.897
MA0079.20.814
MA0080.29.58035e-16
MA0081.13.03495e-5
MA0083.10.461
MA0084.10.567
MA0087.10.454
MA0088.10.563
MA0090.10.0181
MA0091.10.627
MA0092.10.454
MA0093.10.356
MA0099.20.00724
MA0100.10.917
MA0101.10.0101
MA0102.21.4117e-4
MA0103.10.21
MA0104.20.367
MA0105.12.02042e-5
MA0106.10.532
MA0107.10.00371
MA0108.27.94471e-6
MA0111.10.433
MA0112.20.00116
MA0113.10.65
MA0114.10.0735
MA0115.10.41
MA0116.14.45939e-5
MA0117.10.242
MA0119.10.39
MA0122.10.326
MA0124.10.089
MA0125.10.376
MA0131.10.537
MA0135.10.3
MA0136.11.20795e-20
MA0137.20.721
MA0138.20.985
MA0139.10.764
MA0140.10.939
MA0141.10.0189
MA0142.10.605
MA0143.10.869
MA0144.10.652
MA0145.10.242
MA0146.10.0179
MA0147.10.492
MA0148.10.387
MA0149.10.116
MA0150.10.00274
MA0152.10.0655
MA0153.10.0246
MA0154.10.00193
MA0155.10.933
MA0156.13.06182e-13
MA0157.10.205
MA0159.10.0784
MA0160.10.00201
MA0162.10.721
MA0163.13.00528e-10
MA0164.10.881
MA0258.10.0132
MA0259.10.815



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13229

Novel motifP-value
10.144
100.0335
1000.913
1010.41
1020.568
1030.41
1040.564
1050.0813
1060.0117
1070.911
1080.73
1090.028
110.235
1100.194
1110.0861
1120.287
1130.432
1140.0178
1150.368
1160.764
1170.0172
1180.0997
1190.246
120.186
1200.6
1210.749
1220.682
1230.00165
1240.261
1250.253
1260.173
1270.509
1280.0997
1290.874
130.0715
1300.308
1310.622
1320.036
1330.15
1340.663
1350.315
1360.657
1378.08814e-5
1380.341
1390.00878
140.397
1400.247
1410.805
1420.972
1430.0544
1440.938
1450.443
1460.985
1470.475
1480.0339
1490.615
150.128
1500.589
1510.222
1520.205
1530.647
1540.975
1550.102
1560.943
1570.732
1580.105
1590.158
160.596
1600.713
1610.505
1620.353
1630.258
1640.191
1650.106
1660.275
1670.128
1680.533
1690.015
170.325
180.228
190.365
20.93
200.343
210.491
220.209
230.316
240.265
250.146
260.0405
270.671
280.501
290.111
30.0954
300.335
310.639
320.703
330.192
340.526
350.21
360.0378
370.0528
380.501
390.867
40.898
400.0917
410.0416
420.259
430.0743
440.879
450.898
460.18
470.471
480.484
490.0874
50.0785
500.968
510.396
520.381
530.252
540.411
550.396
560.832
570.978
580.0416
590.157
60.812
600.0487
610.165
620.0212
630.542
640.436
650.349
660.39
670.493
680.524
690.688
70.157
700.0374
710.0398
720.314
730.114
740.411
750.0296
760.203
770.636
780.249
790.753
80.508
800.255
810.235
820.181
830.675
840.55
850.0679
860.0827
870.233
880.617
890.888
90.316
900.0995
910.463
920.569
930.394
940.0464
950.00829
960.3
970.955
980.0976
990.0816



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13229


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000875 (non-classical monocyte)
0002396 (CD14-low, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011100 (human CD14-CD16-positive Monocytes sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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