FFCP PHASE1:Hg19::chr12:58145555..58145603,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1019 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1773 | |||
|TSSclassifier=strong | |||
|UniProt=F8VWX7 | |||
|association_with_transcript=56bp_to_ENST00000552254_5end | |||
|coexpression_cluster_id=C181 | |||
|description=CAGE_peak_3_at_CDK4_5end | |||
|id=chr12:58145555..58145603,- | |||
|ontology_enrichment_celltype=CL:0000055!3.01e-31!180;CL:0000183!8.21e-22!59;CL:0000680!3.75e-21!57;CL:0000056!3.75e-21!57;CL:0000355!3.75e-21!57;CL:0000187!2.04e-20!54;CL:0000393!1.56e-19!60;CL:0000211!1.56e-19!60;CL:0000192!1.76e-19!42;CL:0000514!1.76e-19!42;CL:0000222!2.95e-19!119;CL:0002321!5.02e-18!248;CL:0000220!5.42e-18!246;CL:0000548!1.80e-17!679;CL:0000004!1.80e-17!679;CL:0000255!1.80e-17!679;CL:0000012!2.89e-17!682;CL:0000359!3.27e-16!32;CL:0000144!1.24e-15!625;CL:0002371!4.54e-12!591;CL:0000003!1.28e-10!722;CL:0002494!4.73e-10!16;CL:0000057!3.51e-09!75;CL:0002539!2.45e-07!10;CL:0000048!3.54e-07!430;CL:0000034!6.59e-07!444;CL:0000723!8.84e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000192;1.74e-18;43!CL:0000359;2.16e-17;32!CL:0002494;2.83e-17;16!CL:0000187;6.71e-11;55!CL:0000393;4.98e-09;61!CL:0000211;4.98e-09;61!CL:0002539;5.18e-09;10!CL:0000569;1.42e-07;4!CL:0000048;1.43e-07;58!CL:1000306;2.15e-07;4!CL:0002547;2.15e-07;4!CL:0000134;4.53e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,4.49e-25,43;CL:0000514,4.49e-25,43;CL:0000187,1.32e-20,55;CL:0000680,3.61e-20,58;CL:0000056,3.61e-20,58;CL:0000355,3.61e-20,58;CL:0000393,9.72e-19,61;CL:0000211,9.72e-19,61;CL:0000359,2.52e-18,32;CL:0000222,1.03e-17,121;CL:0002494,1.39e-17,16;CL:0000048,5.89e-11,427;CL:0000723,1.94e-10,433;CL:0000034,3.10e-10,441;CL:0002321,6.36e-10,250;CL:0002539,2.73e-09,10;CL:0000569,1.50e-07,4;CL:0000011,1.50e-07,4;CL:1000306,2.67e-07,4;CL:0002547,2.67e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000514;1.74e-18;43!CL:0000355;5.28e-10;58!CL:0000011;1.42e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!4.33e-21!61;UBERON:0002036!4.33e-21!61;UBERON:0003082!4.33e-21!61;UBERON:0002385!1.39e-19!63;UBERON:0001015!1.39e-19!63;UBERON:0000383!1.39e-19!63;UBERON:0004290!6.67e-19!70;UBERON:0001637!7.67e-17!42;UBERON:0003509!7.67e-17!42;UBERON:0004572!7.67e-17!42;UBERON:0000914!1.02e-16!83;UBERON:0002329!1.02e-16!83;UBERON:0003077!1.02e-16!83;UBERON:0003059!1.02e-16!83;UBERON:0007282!1.02e-16!83;UBERON:0009618!1.02e-16!83;UBERON:0007285!1.02e-16!83;UBERON:0000486!2.14e-16!82;UBERON:0004872!2.38e-15!84;UBERON:0004535!7.63e-15!110;UBERON:0003914!2.12e-14!118;UBERON:0002049!2.46e-14!79;UBERON:0007798!2.46e-14!79;UBERON:0001009!4.48e-14!113;UBERON:0001981!9.96e-14!60;UBERON:0007500!9.96e-14!60;UBERON:0004537!9.96e-14!60;UBERON:0006965!9.96e-14!60;UBERON:0000490!1.02e-13!138;UBERON:0004573!2.21e-13!33;UBERON:0004571!2.21e-13!33;UBERON:0000055!2.42e-13!69;UBERON:0005256!4.51e-13!143;UBERON:0002100!3.70e-08!216;UBERON:0003104!2.20e-07!238;UBERON:0009142!2.20e-07!238;UBERON:0004237!2.45e-07!10;UBERON:0004695!2.45e-07!10;UBERON:0002111!2.45e-07!10;UBERON:0004178!2.45e-07!10;UBERON:0000948!5.03e-07!24;UBERON:0005498!5.03e-07!24;UBERON:0004140!5.03e-07!24;UBERON:0009881!5.03e-07!24;UBERON:0004141!5.03e-07!24;UBERON:0003084!5.03e-07!24;UBERON:0007005!5.03e-07!24;UBERON:0004139!5.03e-07!24;UBERON:0004291!5.03e-07!24;UBERON:0000947!5.03e-07!21;UBERON:0010191!5.03e-07!21;UBERON:0001135!7.09e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.78e-19;33!UBERON:0004571;1.78e-19;33!UBERON:0001637;9.98e-18;42!UBERON:0003509;9.98e-18;42!UBERON:0004572;9.98e-18;42!UBERON:0000948;2.32e-11;22!UBERON:0007500;5.96e-11;56!UBERON:0001981;5.96e-11;56!UBERON:0004537;5.96e-11;56!UBERON:0001135;4.64e-10;15!UBERON:0000947;7.46e-10;21!UBERON:0010191;7.46e-10;21!UBERON:0007100;1.70e-09;25!UBERON:0004237;5.18e-09;10!UBERON:0004695;5.18e-09;10!UBERON:0002111;5.18e-09;10!UBERON:0004178;5.18e-09;10!UBERON:0000055;1.06e-08;65!UBERON:0003513;1.34e-08;7!UBERON:0004797;2.15e-07;4!UBERON:0000415;2.15e-07;4!UBERON:0007240;2.15e-07;4!UBERON:0005742;2.15e-07;4!UBERON:0005734;2.15e-07;4!UBERON:0004664;2.15e-07;4!UBERON:0004663;2.15e-07;4!UBERON:0002049;3.22e-07;75!UBERON:0007798;3.22e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,3.40e-25,42;UBERON:0003509,3.40e-25,42;UBERON:0004572,3.40e-25,42;UBERON:0004872,1.05e-23,83;UBERON:0004573,4.57e-22,33;UBERON:0004571,4.57e-22,33;UBERON:0004535,1.93e-20,109;UBERON:0001009,1.80e-19,112;UBERON:0003914,1.98e-19,117;UBERON:0007500,5.83e-19,59;UBERON:0001981,5.83e-19,59;UBERON:0004537,5.83e-19,59;UBERON:0006965,5.83e-19,59;UBERON:0000055,9.40e-19,68;UBERON:0001134,3.66e-18,62;UBERON:0002036,3.66e-18,62;UBERON:0003082,3.66e-18,62;UBERON:0002385,2.94e-17,64;UBERON:0001015,2.94e-17,64;UBERON:0000383,2.94e-17,64;UBERON:0002049,8.67e-17,78;UBERON:0007798,8.67e-17,78;UBERON:0007503,3.79e-15,78;UBERON:0002329,1.61e-14,71;UBERON:0003059,1.61e-14,71;UBERON:0007282,1.61e-14,71;UBERON:0004290,1.61e-14,71;UBERON:0009618,1.61e-14,71;UBERON:0003077,3.56e-14,72;UBERON:0007285,3.56e-14,72;UBERON:0000948,6.88e-14,24;UBERON:0005498,6.88e-14,24;UBERON:0004140,6.88e-14,24;UBERON:0009881,6.88e-14,24;UBERON:0004141,6.88e-14,24;UBERON:0003084,6.88e-14,24;UBERON:0007005,6.88e-14,24;UBERON:0004139,6.88e-14,24;UBERON:0004291,6.88e-14,24;UBERON:0007524,7.69e-14,73;UBERON:0005256,3.12e-12,122;UBERON:0003104,8.70e-12,160;UBERON:0009142,8.70e-12,160;UBERON:0007100,8.83e-12,27;UBERON:0000486,9.92e-12,83;UBERON:0000926,2.90e-11,315;UBERON:0004120,2.90e-11,315;UBERON:0006603,2.90e-11,315;UBERON:0001135,2.73e-10,15;UBERON:0000947,6.00e-10,21;UBERON:0010191,6.00e-10,21;UBERON:0003081,2.37e-09,203;UBERON:0004237,2.73e-09,10;UBERON:0004695,2.73e-09,10;UBERON:0002111,2.73e-09,10;UBERON:0004178,2.73e-09,10;UBERON:0000490,3.36e-09,148;UBERON:0003498,1.09e-08,5;UBERON:0005985,1.09e-08,5;UBERON:0003513,2.11e-08,7;UBERON:0000415,2.67e-07,4;UBERON:0007240,2.67e-07,4;UBERON:0005742,2.67e-07,4;UBERON:0005734,2.67e-07,4;UBERON:0004664,2.67e-07,4;UBERON:0004663,2.67e-07,4;UBERON:0000483,6.79e-07,306 | |||
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| |||
|short_description=p3@CDK4 | |||
}} |
Revision as of 14:15, 11 January 2014
Short description: | p3@CDK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDK4_5end |
Coexpression cluster: | C181_liposarcoma_somatostatinoma_neuroblastoma_mesothelioma_nonsmall_small_Alveolar |
Association with transcript: | 56bp_to_ENST00000552254_5end |
EntrezGene: | CDK4 |
HGNC: | 1773 |
UniProt: | F8VWX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 4.49e-25 | 43 |
smooth muscle myoblast | 4.49e-25 | 43 |
muscle cell | 1.32e-20 | 55 |
muscle precursor cell | 3.61e-20 | 58 |
myoblast | 3.61e-20 | 58 |
multi-potent skeletal muscle stem cell | 3.61e-20 | 58 |
electrically responsive cell | 9.72e-19 | 61 |
electrically active cell | 9.72e-19 | 61 |
vascular associated smooth muscle cell | 2.52e-18 | 32 |
mesodermal cell | 1.03e-17 | 121 |
cardiocyte | 1.39e-17 | 16 |
multi fate stem cell | 5.89e-11 | 427 |
somatic stem cell | 1.94e-10 | 433 |
stem cell | 3.10e-10 | 441 |
embryonic cell | 6.36e-10 | 250 |
aortic smooth muscle cell | 2.73e-09 | 10 |
cardiac mesenchymal cell | 1.50e-07 | 4 |
migratory trunk neural crest cell | 1.50e-07 | 4 |
fibroblast of tunica adventitia of artery | 2.67e-07 | 4 |
fibroblast of the aortic adventitia | 2.67e-07 | 4 |