FFCP PHASE1:Hg19::chr4:56814168..56814203,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=weak | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C428 | |||
|description=CAGE_peak_at_chr4:56814168..56814203,- | |||
|id=chr4:56814168..56814203,- | |||
|ontology_enrichment_celltype=CL:0000738!2.27e-30!140;CL:0002087!6.59e-26!119;CL:0002031!1.19e-24!124;CL:0002057!3.08e-23!42;CL:0000037!8.52e-21!172;CL:0000566!8.52e-21!172;CL:0000988!2.99e-20!182;CL:0000860!7.90e-20!45;CL:0000766!1.43e-19!76;CL:0002009!4.91e-19!65;CL:0002032!7.54e-19!165;CL:0000837!7.54e-19!165;CL:0000557!2.13e-18!71;CL:0002194!2.92e-18!63;CL:0000576!2.92e-18!63;CL:0000040!2.92e-18!63;CL:0000559!2.92e-18!63;CL:0000839!6.22e-17!70;CL:0002139!7.01e-17!24;CL:0000115!2.91e-15!35;CL:0000071!1.34e-12!18;CL:0002546!1.34e-12!18;CL:0000213!2.83e-12!57;CL:0000215!2.83e-12!57;CL:0002078!5.68e-12!44;CL:0000763!1.56e-11!112;CL:0000049!1.56e-11!112;CL:0000134!7.18e-09!358;CL:0000048!2.03e-08!430;CL:0002320!3.02e-08!365;CL:0000723!3.88e-08!436;CL:0000945!4.09e-08!24;CL:0000826!4.09e-08!24;CL:0000236!4.50e-08!14;CL:0000034!6.35e-08!444;CL:0000838!1.25e-07!52;CL:0000542!1.51e-07!53;CL:0000051!1.51e-07!53;CL:1000413!4.28e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.62e-23;24!CL:0000860;3.48e-22;33!CL:0002057;3.48e-22;33!CL:0000473;4.36e-20;39!CL:0000234;4.36e-20;39!CL:0000115;7.78e-18;36!CL:0000071;4.81e-17;18!CL:0000576;1.22e-16;48!CL:0000766;4.55e-13;69!CL:0000236;5.73e-11;13!CL:0000738;3.29e-10;136!CL:0000945;6.76e-10;24!CL:0002078;1.03e-09;45!CL:0002087;1.48e-09;104!CL:1000413;2.48e-09;9!CL:0002138;1.35e-07;6!CL:0000213;1.93e-07;58!CL:0000215;1.93e-07;58!CL:0002544;8.57e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.19e-41,136;CL:0002087,4.29e-35,115;CL:0002031,1.13e-33,120;CL:0000473,9.45e-33,48;CL:0000234,9.45e-33,48;CL:0000860,2.68e-31,42;CL:0002057,2.68e-31,42;CL:0000037,4.52e-31,168;CL:0000988,2.92e-29,177;CL:0000766,1.19e-28,72;CL:0002009,3.76e-28,61;CL:0002032,5.65e-28,161;CL:0000837,5.65e-28,161;CL:0002194,4.80e-27,59;CL:0000576,4.80e-27,59;CL:0000040,4.80e-27,59;CL:0000559,4.80e-27,59;CL:0000557,1.22e-26,67;CL:0000839,7.50e-25,66;CL:0002139,5.42e-23,24;CL:0000115,4.27e-21,36;CL:0000763,4.36e-19,108;CL:0000049,4.36e-19,108;CL:0000071,5.38e-17,18;CL:0002546,5.38e-17,18;CL:0002078,2.97e-14,45;CL:0000213,1.58e-11,58;CL:0000215,1.58e-11,58;CL:0000236,3.61e-11,14;CL:0000134,8.63e-10,354;CL:0000945,1.06e-09,24;CL:0000826,1.06e-09,24;CL:1000413,2.63e-09,9;CL:0002320,6.34e-09,361;CL:0000048,7.03e-09,427;CL:0000838,7.73e-09,52;CL:0000034,9.48e-09,441;CL:0000542,1.76e-08,53;CL:0000051,1.76e-08,53;CL:0000723,1.79e-08,433;CL:0002393,4.21e-08,9;CL:0002397,4.21e-08,9;CL:0005020,1.42e-07,6;CL:0002138,1.42e-07,6;CL:0005022,1.42e-07,6;CL:0002544,9.03e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;2.52e-22;42!CL:0002546;4.81e-17;18!CL:0005022;1.35e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!3.12e-23!216;UBERON:0002193!6.96e-23!112;UBERON:0002390!1.50e-19!102;UBERON:0003061!1.50e-19!102;UBERON:0002371!4.67e-16!80;UBERON:0002405!2.79e-14!115;UBERON:0001474!4.14e-14!86;UBERON:0000055!1.13e-13!69;UBERON:0004765!1.06e-12!101;UBERON:0001434!1.06e-12!101;UBERON:0001986!1.34e-12!18;UBERON:0004638!1.34e-12!18;UBERON:0004852!1.34e-12!18;UBERON:0004535!2.04e-12!110;UBERON:0001009!1.10e-11!113;UBERON:0001981!4.69e-11!60;UBERON:0007500!4.69e-11!60;UBERON:0004537!4.69e-11!60;UBERON:0006965!4.69e-11!60;UBERON:0004872!2.01e-10!84;UBERON:0000487!3.71e-10!22;UBERON:0002049!1.37e-09!79;UBERON:0007798!1.37e-09!79;UBERON:0006914!5.18e-09!25;UBERON:0002204!2.12e-08!167;UBERON:0002384!1.08e-07!375;UBERON:0003915!4.28e-07!9;UBERON:0004700!4.28e-07!9;UBERON:0001917!4.28e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.81e-17;18!UBERON:0001986;4.81e-17;18!UBERON:0004852;4.81e-17;18!UBERON:0000487;3.94e-14;22!UBERON:0006914;1.76e-11;25!UBERON:0003915;2.48e-09;9!UBERON:0004700;2.48e-09;9!UBERON:0001917;2.48e-09;9!UBERON:0000055;4.70e-08;65!UBERON:0000490;3.46e-07;33!UBERON:0007500;4.08e-07;56!UBERON:0001981;4.08e-07;56!UBERON:0004537;4.08e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.23e-32,203;UBERON:0002193,1.23e-30,108;UBERON:0002405,9.49e-28,93;UBERON:0002390,5.51e-27,98;UBERON:0003061,5.51e-27,98;UBERON:0002371,1.04e-24,76;UBERON:0001474,5.01e-22,82;UBERON:0004765,5.54e-21,90;UBERON:0001434,3.09e-18,100;UBERON:0004638,5.38e-17,18;UBERON:0001986,5.38e-17,18;UBERON:0004852,5.38e-17,18;UBERON:0000926,4.21e-14,315;UBERON:0004120,4.21e-14,315;UBERON:0006603,4.21e-14,315;UBERON:0000487,4.25e-14,22;UBERON:0000055,9.31e-14,68;UBERON:0006914,1.86e-11,25;UBERON:0004535,2.32e-11,109;UBERON:0007500,6.30e-11,59;UBERON:0001981,6.30e-11,59;UBERON:0004537,6.30e-11,59;UBERON:0006965,6.30e-11,59;UBERON:0001009,1.41e-10,112;UBERON:0002049,4.19e-10,78;UBERON:0007798,4.19e-10,78;UBERON:0003915,2.63e-09,9;UBERON:0004700,2.63e-09,9;UBERON:0001917,2.63e-09,9;UBERON:0004872,2.85e-09,83;UBERON:0002204,3.67e-09,167;UBERON:0002384,1.92e-08,371 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,5.3786011716142,2.41077811209591,2.92124036154949,2.43966399395253,0.123121058076788,0,0,0,0.273748850145768,0,2.36881557818649,2.79142004129816,2.36132343941038,5.11373559903575,6.52509976765262,4.33485145285013,0.919421224478927,0.30120591877825,0,2.24654881682875,1.13735385989937,9.39521405871511,10.5259127621057,8.82395568868623,9.76548918221333,0.671746422719773,1.6194683300949,0.77272670290256,3.05336301437086,0.377875943688809,4.60909716256851,7.20530014407622,4.93401465626191,4.33588919253145,24.1661609550606,18.6997315766243,35.4723344832878,7.23965929546899,8.39130088658974,13.5426486594342,5.64727018627814,2.18324920046277,8.31476892446813,6.12167784741805,2.88836124368484,5.75403413219137,12.8642007072819,11.7683557996763,14.4916415181116,13.3496249769149,8.5107783703671,13.7020894779026,14.8236712501479,10.429658368404,21.9360733152168,7.87019353423379,7.73383035573886,16.7725065343669,3.80259515361495,9.56719349842696,6.70907665626803,2.92054440980887,3.75442232103766,2.4108838004562,4.84521664360123,3.9783335439818,3.83594722905731,22.879511779972,14.7457425040775,26.6852776159066,15.7890182349608,19.6194033647646,18.3920780785435,23.797615420255,21.9432363543134,32.4451392392386,11.7447437874188,17.9668417218858,15.8605594294831,5.04457706683382,1.84368859342554,0.983548850569165,2.35806457649499,2.67281948699362,3.8452893939856,2.28145586643513,0.946895611469467,5.84480185223734,4.79064964606246,2.65145316727353,5.31681347000691,1.08321545506006,2.43373507478783,5.20237390239513,0.822189523018381,1.93445012450094,2.31842468588042,1.33457906845854,1.07016331235885,1.04535523804977,0.679856056185397,1.53288197440768,3.09264700934367,1.01207876807801,1.91139248594458,0,0,1.20460095262218,1.02389288923535,0,0.473554504088034,0.821127996921047,0.80642697289893,0.534880391567015,1.73789284659359,0,0,0.639312809217652,0.361439152384566,0.50133791063589,0.144846518960824,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.72038491523742,0,0,0.649094787309367,1.56716763569341,2.39324328933957,5.00830311041218,9.15191857248205,5.94332002127304,16.2985174040698,6.881876760849,9.37279354340505,13.0020826642522,16.7799774483962,8.52865930014209,10.2407533603037,32.3020948961661,31.3074311164305,56.2330629444646,30.212198783186,21.2876189601184,19.7690266614017,18.7508170976393,17.012980905517,11.5196649486463,6.28682243353275,6.53146586803269,13.7984973719295,9.49265659568129,9.52649068438118,3.9534125230819,3.87780264148325,0,0.496971951695318,1.2663051166458,4.10468460520978,1.43418310374407,0.709336764396714,0,1.06748995729705,0.24666754841716,1.24484414159907,2.15537075311501,2.12500474047496,0,0,0,0,3.4228309292667,0.597794722207204,0,0,0.140450806702248,0,0.122834317311768,0,0,3.21447008062124,0,0.718618141816238,0,0,0,0.877955241761676,1.22595118319608,3.75595147266492,1.36118619792025,0.179389635688862,0,0.211931901159562,0.600182192168805,0.103052529238439,0,0.37223371266318,0,0,0.252433774244115,0.368199594569197,0,0.355009592516614,0.10075209822764,0.508681776931463,8.69673839234836,3.27295344709002,5.44928731239107,0,0,0,0,0,0,0,0,0,1.85747171212792,0.721879481669586,0,0.168584690078102,0,0,0,0,0,0.392442930250692,0.769494313892781,5.90524363699719,1.40241773803446,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,1.1240175325762,0.703702806881416,0.0925884451585296,0,0,0,0,0.117408694235822,33.6373823283302,25.4642031917136,26.2550730083746,0,0.858486162094873,3.20082107913617,7.25413221931637,1.78357394746474,2.81201501960331,2.68771405118175,3.1190521393325,0,0,0.383382679165211,0.492663237895943,0.176096868026452,1.24396869324463,1.29707958075265,1.2624243342638,0.126995788584338,1.14596527667483,0,1.71072446022705,0.616964956219941,0.600686115687835,0.285826432630578,0.897048674762886,0,0.4400297149257,2.19761916788222,3.57656445851882,0,0.531876233169741,2.08014873822732,0,0,0,0.428933980974443,0,0,0.325736184293735,0,0,1.80863626235752,0,0.899756920638513,2.43247561282381,0,2.10833939483032,3.35474797688216,0,0,1.15825045334063,0,0.537182889719687,0,1.57624608161542,1.07813787429759,1.54011643535698,0,0,0,0,0,0,0,2.48649308061621,0.24538298343828,0.500170521059677,0.271265023699736,0,0.356857977594324,0.157702415033935,0,1.80567659836631,2.27407504055985,1.03473071292505,0.664225598535437,0.368738337083406,1.12948698808508,0,0,5.78950473144085,4.09856981555372,1.60091336705167,0,0,0,0.248107807818777,0.460385919864187,0,0.384417447767103,0,0,0,0.771048469013278,0,0.328508624055237,0.519254429183621,0.348631135379878,0,3.20810352485256,0,0.114814448164607,0.910455840033585,1.18011973463482,0,0.308061348417659,0,0,0.105551628892876,5.68666920354483,5.95327968467805,3.02282282542995,7.71136263451447,0.270946437543853,0,0,0,0.447749509444357,0,0,0,0,0.976135183992909,1.75169719801128,0,0.082509499920588,0,0.650060246036521,4.82051789532479,0.290012154876366,0,0,0.55134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| |||
|short_description=p@chr4:56814168..56814203,- | |||
}} |
Revision as of 01:08, 22 January 2014
Short description: | p@chr4:56814168..56814203, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:56814168..56814203, - |
Coexpression cluster: | C428_Endothelial_Renal_Lymphatic_Hepatic_adipose_heart_breast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.23e-32 | 203 |
hemolymphoid system | 1.23e-30 | 108 |
immune system | 9.49e-28 | 93 |
hematopoietic system | 5.51e-27 | 98 |
blood island | 5.51e-27 | 98 |
bone marrow | 1.04e-24 | 76 |
bone element | 5.01e-22 | 82 |
skeletal element | 5.54e-21 | 90 |
skeletal system | 3.09e-18 | 100 |
blood vessel endothelium | 5.38e-17 | 18 |
endothelium | 5.38e-17 | 18 |
cardiovascular system endothelium | 5.38e-17 | 18 |
mesoderm | 4.21e-14 | 315 |
mesoderm-derived structure | 4.21e-14 | 315 |
presumptive mesoderm | 4.21e-14 | 315 |
simple squamous epithelium | 4.25e-14 | 22 |
vessel | 9.31e-14 | 68 |
squamous epithelium | 1.86e-11 | 25 |
cardiovascular system | 2.32e-11 | 109 |
epithelial tube open at both ends | 6.30e-11 | 59 |
blood vessel | 6.30e-11 | 59 |
blood vasculature | 6.30e-11 | 59 |
vascular cord | 6.30e-11 | 59 |
circulatory system | 1.41e-10 | 112 |
vasculature | 4.19e-10 | 78 |
vascular system | 4.19e-10 | 78 |
endothelial tube | 2.63e-09 | 9 |
arterial system endothelium | 2.63e-09 | 9 |
endothelium of artery | 2.63e-09 | 9 |
splanchnic layer of lateral plate mesoderm | 2.85e-09 | 83 |
musculoskeletal system | 3.67e-09 | 167 |
connective tissue | 1.92e-08 | 371 |