FFCP PHASE1:Hg19::chr4:77966727..77966730,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:77966727..77966730,+ | |||
|id=chr4:77966727..77966730,+ | |||
|ontology_enrichment_celltype=CL:0002620!6.85e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.90e-10;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,2.69e-10,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;7.43e-08;5!DOID:450;7.43e-08;5!DOID:66;7.43e-08;5!DOID:423;7.43e-08;5!DOID:0080000;7.43e-08;5!DOID:11722;7.43e-08;5!DOID:1192;6.44e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:17,9.72e-08,5;DOID:450,9.72e-08,5;DOID:66,9.72e-08,5;DOID:423,9.72e-08,5;DOID:0080000,9.72e-08,5;DOID:11722,9.72e-08,5;DOID:1192,5.14e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000955!2.48e-17!69;UBERON:0006238!2.48e-17!69;UBERON:0000073!1.17e-16!94;UBERON:0001016!1.17e-16!94;UBERON:0001017!4.07e-16!82;UBERON:0002616!8.17e-16!59;UBERON:0002780!2.35e-14!41;UBERON:0001890!2.35e-14!41;UBERON:0006240!2.35e-14!41;UBERON:0005743!2.54e-14!86;UBERON:0001049!3.73e-14!57;UBERON:0005068!3.73e-14!57;UBERON:0006241!3.73e-14!57;UBERON:0007135!3.73e-14!57;UBERON:0003080!1.13e-13!42;UBERON:0002020!2.18e-13!34;UBERON:0003528!2.18e-13!34;UBERON:0001869!4.14e-13!32;UBERON:0001893!9.27e-13!34;UBERON:0002791!1.97e-12!33;UBERON:0000956!5.92e-12!25;UBERON:0000203!5.92e-12!25;UBERON:0002619!1.32e-11!22;UBERON:0001950!2.01e-10!20;UBERON:0002346!1.38e-09!90;UBERON:0003075!1.44e-09!86;UBERON:0007284!1.44e-09!86;UBERON:0000924!9.02e-09!173;UBERON:0006601!9.02e-09!173;UBERON:0004121!1.18e-08!169;UBERON:0000153!1.70e-08!129;UBERON:0007811!1.70e-08!129;UBERON:0000033!1.75e-08!123;UBERON:0003056!3.56e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.43e-14;20!UBERON:0002619;3.68e-13;22!UBERON:0002791;8.37e-12;32!UBERON:0001869;8.98e-12;32!UBERON:0000956;1.87e-11;25!UBERON:0000203;1.87e-11;25!UBERON:0003528;1.99e-10;34!UBERON:0002020;1.99e-10;34!UBERON:0001893;4.00e-10;34!UBERON:0002702;1.55e-09;2!UBERON:0002780;4.27e-08;41!UBERON:0001890;4.27e-08;41!UBERON:0000073;4.55e-07;53!UBERON:0002616;4.55e-07;53!UBERON:0000200;7.97e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.59e-14,20;UBERON:0002619,4.04e-13,22;UBERON:0002791,5.02e-13,32;UBERON:0001869,5.02e-13,32;UBERON:0003528,3.74e-12,34;UBERON:0002020,3.74e-12,34;UBERON:0001893,3.74e-12,34;UBERON:0000956,2.03e-11,25;UBERON:0000203,2.03e-11,25;UBERON:0000073,3.36e-10,53;UBERON:0002616,3.36e-10,53;UBERON:0002780,9.26e-10,41;UBERON:0001890,9.26e-10,41;UBERON:0003080,9.26e-10,41;UBERON:0006240,9.26e-10,41;UBERON:0001049,1.62e-09,56;UBERON:0005068,1.62e-09,56;UBERON:0006241,1.62e-09,56;UBERON:0007135,1.62e-09,56;UBERON:0002702,2.87e-09,2;UBERON:0000955,1.42e-08,68;UBERON:0006238,1.42e-08,68;UBERON:0001016,4.83e-08,89;UBERON:0002346,2.16e-07,86;UBERON:0003056,3.23e-07,61;UBERON:0003075,8.28e-07,82;UBERON:0007284,8.28e-07,82;UBERON:0001017,8.91e-07,81 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0.281908808191942,0,0.893922188854576,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.572471974262113,0.136874425072884,0.125542639594803,0.229240217243854,0.164201178899891,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0.217010870715852,0,0.647787332037959,0,0,0,0,0,0,0.619412741790207,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0.390178042679635,0.493313713811028,1.93445012450094,0,0,0.267540828089713,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,1.24930726552346,0,0,0,0,0.144824403882799,2.43806866313962,0,0,0.361439152384566,1.50401373190767,0.144846518960824,0,0,0.378139268656271,0.221729397462564,0.43917392846563,0.0654895377488563,0,0,0.97364218096405,0.522389211897802,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,1.33888245105868,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,2.98183171017191,0,0.926864265692532,0.573673241497627,0.354668382198357,0,0,0,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0.352303495931295,0.647491777472526,0.561803226808994,0.204154171254893,0.368502951935304,0.103325781175765,0,0.247266929278557,0,0,0.336672227908132,0,0,0,0.919463387397059,0.300476117813194,0,1.07633781413317,1.06778694409284,0.211931901159562,1.80054657650641,0.309157587715317,2.31876486041066,0.744467425326359,1.35021065793013,0.68205903612839,2.27190396819703,1.10459878370759,0.161646056818812,2.84007674013291,0.906768884048762,0.169560592310488,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0.246217006087397,0.234004265139238,0.297262324577456,0,0,0,0,0,0,0.492663237895943,0.704387472105808,0,0.432359860250884,0.75745460055828,0,0,0,0,0,0.300343057843917,0,0,0.43596006883328,0.07333828582095,1.03417372606222,0,0.845302752556,0,0,0,0,0,0,0,0,0.325736184293735,0.355391948742546,0,0,0,0.399891964728228,0,0,0,0.239624855491583,0,2.85273810081437,0,0.410952645100767,0,0.336255431980582,0,0.215627574859517,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0.788512075169673,0.468565659970853,0,0,0,0,0.184369168541703,0.434418072340414,0,0.343143423810856,0.206768026122887,0,0.106727557803444,0,0,0,0.744323423456331,1.68808170616869,0.280660094433074,0.128139149255701,0.511707249066704,0.965123526861645,1.48418066444991,0.308419387605311,0,0.0821271560138091,0,0,0.120859449591622,0,0,0.114814448164607,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.206082023295445,0.183138929636687,0.165018999841176,0,0,0,0.290012154876366,0,0.307007349452259,0.275673144969061,0.644521469209642,0,0.170453254832202,0.0890320356467374,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0.744316738719335,0.316379424718726,0.953150969619124,0,0,0,0,0.539617372749944,0.54907405947211,0.471249609382746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0.35667105148125,0.354761064070598,0,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.213648142254946,1.92495971052672,0,0,0.144269212976445,0.640276590135727,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0.18714054040822,0,0.242721043499027,0,0.284136146806413,0,0,0,0.994147647766298,1.40669416410513,0.111308705022906,0,0.844501632511974,0.19924798825107,0,0,0.613612095012929,0,0.933118762985422,0.179736702294654,0.179021174675609,0,0,0,0,0.969332746095218,0.649376687132959,1.99613798001194,0,0.174919999992391,0,0.1137934482855,0.508507300585533,0,0.344743373241465,0.291604613383254,0,0,1.4471572635049,1.52581736317083,1.99042667876204,0.295547618953547,0.658156191461918,0,0.139423744278603,0.153900517007594,0.227884111694002,0.23056390438806,0.179515288819544,0.108647371922008,0,0.0915975934018623,0.533034776018635,0,0.156980256395025,0.166211681900156,0.225595660617181,0,0.167821586975843,0,0.158936578980379,0.421996129056054,0.326465616318295,0,0.216388639742091,0,0.442287822516696,0.611030144933625,0.593042257361244,0.370691816839509,0,0,1.60515529459758,0.234264445725339,0,0,0.485560759068186,0,0,1.83643656978294,0.568679216656392,0.150323419414493,0.103688191397247,0,0.330991955875499,0,0,0,0,0.173559738335131,0.0979923974143777,0.174118413160805,0,0.171986032471617,0,0,0,0.193978032976839,0.176512253383001,0.451961481561065,0.548167698587004,0,0.569797163602908,0.195551382734803,0,0,0.599428828746391,0,0.229073192331831,0.514784993585894,0,0,0,0.67952103036807,0.209205692624666,0.305994652908965,0,0,0.821432273351958,0,1.71906176567983,0,0.279282401272254,0.458320848023367,0.717873024576814,0.199679000498991,1.28767814440971,0,0.0671834724867263,2.16179930125442,0,0.157566364614447,0,0.13480708770837,0,0.0846733320657845,0.795229689809303,0.817220436669454,0.160753148465019,0,0,0,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| |||
|short_description=p@chr4:77966727..77966730,+ | |||
}} |
Revision as of 01:45, 22 January 2014
Short description: | p@chr4:77966727..77966730, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:77966727..77966730, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 2.69e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.59e-14 | 20 |
regional part of cerebral cortex | 4.04e-13 | 22 |
regional part of telencephalon | 5.02e-13 | 32 |
cerebral hemisphere | 5.02e-13 | 32 |
brain grey matter | 3.74e-12 | 34 |
gray matter | 3.74e-12 | 34 |
telencephalon | 3.74e-12 | 34 |
cerebral cortex | 2.03e-11 | 25 |
pallium | 2.03e-11 | 25 |
regional part of nervous system | 3.36e-10 | 53 |
regional part of brain | 3.36e-10 | 53 |
regional part of forebrain | 9.26e-10 | 41 |
forebrain | 9.26e-10 | 41 |
anterior neural tube | 9.26e-10 | 41 |
future forebrain | 9.26e-10 | 41 |
neural tube | 1.62e-09 | 56 |
neural rod | 1.62e-09 | 56 |
future spinal cord | 1.62e-09 | 56 |
neural keel | 1.62e-09 | 56 |
middle frontal gyrus | 2.87e-09 | 2 |
brain | 1.42e-08 | 68 |
future brain | 1.42e-08 | 68 |
nervous system | 4.83e-08 | 89 |
neurectoderm | 2.16e-07 | 86 |
pre-chordal neural plate | 3.23e-07 | 61 |
neural plate | 8.28e-07 | 82 |
presumptive neural plate | 8.28e-07 | 82 |
central nervous system | 8.91e-07 | 81 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 9.72e-08 | 5 |
myotonic disease | 9.72e-08 | 5 |
muscle tissue disease | 9.72e-08 | 5 |
myopathy | 9.72e-08 | 5 |
muscular disease | 9.72e-08 | 5 |
myotonic dystrophy | 9.72e-08 | 5 |
peripheral nervous system neoplasm | 5.14e-07 | 3 |