FFCP PHASE1:Mm9::chr11:87405647..87405731,+: Difference between revisions
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{{FFCP|EntrezGene=170749|HGNC=|UniProt=Q91XS1,A7M7R1,E9PVF2,B2KGH1,B2KGH2|association_with_transcript=0bp_to_ENSMUST00000092802,ENSMUST00000103179,ENSMUST00000146871,ENSMUST00000167336,NM_133215,uc007ktz.1,uc007kua.1_5end|description=CAGE_peak_1_at_Mtmr4_5end|id=chr11:87405647..87405731,+|ontology_enrichment_celltype=CL:0000540!8.90e-14!33;CL:0000047!8.90e-14!33;CL:0000031!8.90e-14!33;CL:0000404!8.90e-14!33;CL:0000117!6.98e-13!23;CL:0000337!6.98e-13!23;CL:0000393!1.60e-09!39;CL:0000211!1.60e-09!39;CL:0000221!2.52e-07!44;CL:0000133!2.52e-07!44;CL:0002319!7.03e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,8.90e-14,33;CL:0000047,8.90e-14,33;CL:0000031,8.90e-14,33;CL:0000404,8.90e-14,33;CL:0000117,6.98e-13,23;CL:0000337,6.98e-13,23;CL:0000393,1.60e-09,39;CL:0000211,1.60e-09,39;CL:0000221,2.52e-07,44;CL:0000133,2.52e-07,44;CL:0002319,7.03e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.60e-14!73;UBERON:0005743!1.60e-14!73;UBERON:0000073!6.72e-13!75;UBERON:0001016!6.72e-13!75;UBERON:0000033!4.18e-11!63;UBERON:0001049!4.54e-11!52;UBERON:0005068!4.54e-11!52;UBERON:0006241!4.54e-11!52;UBERON:0007135!4.54e-11!52;UBERON:0000955!7.88e-11!50;UBERON:0006238!7.88e-11!50;UBERON:0002616!1.53e-10!49;UBERON:0000153!3.50e-10!94;UBERON:0000475!1.05e-09!200;UBERON:0007811!1.87e-09!86;UBERON:0002346!5.72e-09!71;UBERON:0003075!5.72e-09!71;UBERON:0007284!5.72e-09!71;UBERON:0003056!1.38e-08!49;UBERON:0004121!2.60e-08!102;UBERON:0000924!2.60e-08!102;UBERON:0006601!2.60e-08!102;UBERON:0003080!3.96e-08!40;UBERON:0002780!1.13e-07!39;UBERON:0001890!1.13e-07!39;UBERON:0006240!1.13e-07!39;UBERON:0002020!2.58e-07!34;UBERON:0004111!7.87e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.60e-14,73;UBERON:0001016,6.72e-13,75;UBERON:0000073,2.05e-12,54;UBERON:0002346,5.29e-12,64;UBERON:0003075,5.29e-12,64;UBERON:0007284,5.29e-12,64;UBERON:0001049,4.54e-11,52;UBERON:0005068,4.54e-11,52;UBERON:0006241,4.54e-11,52;UBERON:0007135,4.54e-11,52;UBERON:0004121,1.41e-10,95;UBERON:0000924,1.41e-10,95;UBERON:0006601,1.41e-10,95;UBERON:0010371,1.96e-10,73;UBERON:0000955,3.93e-09,47;UBERON:0006238,3.93e-09,47;UBERON:0002616,7.42e-09,46;UBERON:0003056,1.38e-08,49;UBERON:0003080,3.96e-08,40;UBERON:0002780,1.13e-07,39;UBERON:0001890,1.13e-07,39;UBERON:0006240,1.13e-07,39;UBERON:0002020,2.58e-07,34;UBERON:0011216,4.61e-07,194;UBERON:0004111,7.87e-07,122;UBERON:0000483,9.43e-07,174|phase1_expression=15.534438169165,10.8182376368202,6.3699893514535,17.2404600444893,11.520601788766,11.7515490338323,8.87728034262997,11.4919757863003,1.68946466582,1.40438715793196,2.73948749160808,2.79202556483677,11.641649635322,12.5885379483356,9.66018309265422,15.1856450542369,13.9912375625629,20.5050407482854,16.4537320326887,14.004858509335,11.9060606211498,5.65958421845046,5.74639536105658,7.1996590257033,6.19405058881359,9.76194338995534,5.59990595006797,4.74036711908956,6.84084310042946,7.81293402255785,4.6563407237614,12.7006134691926,11.6862309641068,15.8481681015439,7.22129049378186,6.31691652362271,6.12508068787107,17.5783284909501,15.626706890476,19.3703785270305,18.8234076169925,17.0761371239611,13.5942898848723,5.79125362687656,5.27160042341476,4.77221555620372,8.60630478782843,8.28495594245697,4.83309602015838,5.44403717407994,10.6389680435276,7.18762821824858,21.3083909693325,10.1550699881588,10.4189077734164,6.43148590089868,8.88253663810146,10.8291139378263,16.1853168687678,17.4567023159771,22.1840991227163,9.4876468979357,9.78224275722253,6.29929802096979,4.94433181283487,6.3943210345149,3.59520132622086,6.91592949578798,14.2054768862614,14.5806413398226,15.984697062705,15.7108041422092,10.3808214247258,16.046294697159,21.1818490950302,22.9804696652505,39.6417171597799,22.7283461791634,31.6429458507862,16.353899678544,20.1272815925301,20.8365348222704,20.3803589271008,14.069065250792,16.0438160165651,22.0971439105251,16.2303716110977,18.6399445825301,1.96888102666279,2.64500460373749,13.6236309689789,18.9293252935905,0.679971333707751,13.4925797909454,9.09686984426737,9.85659151614138,6.03911006566533,2.21559419351475,2.07828803682295,2.12003744706204,18.8730182500752,2.56652954828636,2.54805239706646,28.4426681261332,1.5154372870785,2.02687892380079,1.51657333504435,8.67797485864856,15.2773351351831,8.75808620482466,8.15381035800839,7.91610243611567,5.5347719341454,7.38540938707851,6.70255630673517,7.28866229712118,7.16865406429684,7.66376591675532,18.5768215909474,8.41187619726528,7.50861162765338,5.81850303762267,9.31958806090611,19.0307518057506,15.7085030110091,8.9409969323007,4.07371423320129,5.99902730993408,4.06624726633807,17.6752954497691,14.640019290196,12.062817802835,13.7321212951898,10.4843337505436,13.9217989854905,14.7639549391659,7.02691610567182,8.45967400148633,16.4269792981889,13.4682787767343,12.4915625244196,14.2539304748753,9.18316862007281,9.34369870581433,12.5187158438443,8.96796041993949,11.9938207436453,13.1938719076898,17.8921434134259,17.775971535775,12.1406275673125,9.64461222681329,11.6779844674751,8.358051996532,7.40815691068596,12.5391588095651,4.21327912387941,6.17634977075316,3.6941254921427,8.69928244649108,10.3191466391682,9.7233513188948,8.75955521665278,8.06733350164356,7.40482141859416,9.53389173476672,8.31647544338819,6.07179780309281,6.91151369636618,5.74586124276833,9.64718833595683,8.77199924551994,6.14740322814942,9.93127498826751,14.7202963994889,12.3485534855141,8.26046957459495,8.46241813323342,10.6644125267617,17.1855137176724,6.70110798874885,8.87407508342707,10.229390016864,11.7939888189787,8.0669940462567,8.56434564564857,9.0480675168097,8.55512829776949,10.5280607044325,10.7858329038507,7.5648317456143,8.96135729644652,11.3800740571849,10.3966146474853,9.01661885384643,8.96065842519383,11.4431967428899,9.95928642442524,13.2164362589698,12.8420828742254,11.4609071324204,13.2034965396327,8.30067355844017,11.3454671886944,12.1866576970186,9.219346607779,12.5773275260872,12.7823894668781,14.5136735515409,9.78166867332756,12.1601420081277,6.04035109013779,2.87536413054709,6.32639611036456,11.8574315783533,14.1444171650383,11.1226396383586,11.0962009913574,12.1937105509959,16.1067700004912,19.066902243717,10.6939404038369,12.6732734075791,14.4055381399962,14.0445748122748,12.2934198150413,10.719189799221,8.858587585951,14.6698387164888,12.4536119183961,12.7786886580763,9.25753974921674,6.03165135757089,7.07077388964322,8.85175691434265,11.0374698521893,14.4495530989013,13.7137673312878,1.80328439914343,9.84636616097055,9.4652465824877,13.2749173060857,15.0796378412959,14.0991590792006,13.590719119026,18.9661275628518,12.9539424535966,10.5212108848072,8.69633111482352,13.8168166061377,9.9358059645788,10.5058706163681,6.02681749608232,12.8676695918578,9.2921596837974,11.1679092631291,9.37203026590728,11.3163047853539,11.8120757152309,14.1420168054207,8.01127708821486,8.36127577798263,10.3384239731569,12.6414703174326,10.5418608574999,7.21948802737308,17.0219802876894,13.1444598642856,11.1248468053169,14.7892554171799,12.5911565886014,13.7343989553594,12.3411765451591,10.3518082698964,8.68285319835728,14.6164128896036,20.0680842230015,7.91454014119104,5.16686165426898,8.44380948994182,7.87857470420701,8.20704498725306,11.659233465194,15.9465759729038,11.4483490134561,6.19160603889667,10.0005044779644,11.4904758772862,11.7557035840082,8.23601423543482,3.0596117398894,3.91864066506242,3.31679937130617,5.72802370809068,14.3932877079417,11.9958485604841,8.96444328820951,9.40897332065109,6.98760203987768,7.1478103583955,6.36431609085087,4.97336289769656,8.68420321055012,7.45607175704311,15.2197093444731,12.2603567756063,10.2584264083401,10.5003641705786,11.3660644660403,8.10989402355735,6.80671984145373,9.76532886329626,9.75191903159111,11.3544536788223,12.3852902690882,12.0084225838708,14.1907650703115,11.4009162452958,8.31493267057888,13.6060288707286,9.93406773906325,13.5820857957565,10.7813354837441,13.5295042930518,13.10757074466,9.78013995827353,11.8898614502498,14.3355644044091,12.739582337791,6.12172035761071,5.99362074109975,6.72853924571068,8.05846158547577,10.4322380777383,5.2551093126331,8.79127796482872,4.71610433973945,11.5361583928134,14.1187960654267,11.9684561491866,10.8850147553485,14.2638141345261,7.53590771747707,9.82012066606611,12.8254275044043,9.00642406448441,7.70342095273148,12.9440077937955,16.2946135707157,15.1629451892392,12.6342868258059,11.9122291363464,8.59413966774727,7.90527086335061,8.22312892865976,5.56294654545014,9.62757628775446,6.31743029409494,6.84394109703647,8.29955902098735,8.80230170216895,8.89949618427683,8.73019128125322,13.3362233559261,10.1978206831473,9.45255180272155,11.5384052224926,8.83193520806384,6.51451579532289,9.76116933876356,7.39152188836695,5.66851024866081,9.88148494360971,8.54607539705933,7.68297486065645,7.62902163169744,8.41985505844343,8.97827634652382,9.25353141368558,9.65343927280522,10.2307760792422,9.91595783590182,9.06661071611365,6.99469618226249,5.38042699424439,6.23126056740065,6.88637995447836,6.17655973534643,4.86922454802885|short_description=p1@Mtmr4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:170749 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q91XS1,uniprot:A7M7R1,uniprot:E9PVF2,uniprot:B2KGH1,uniprot:B2KGH2 | |||
|association_with_transcript=0bp_to_ENSMUST00000092802,ENSMUST00000103179,ENSMUST00000146871,ENSMUST00000167336,NM_133215,uc007ktz.1,uc007kua.1_5end | |||
|cluster_id=chr11:87405647..87405731,+ | |||
|description=CAGE_peak_1_at_Mtmr4_5end | |||
|id=chr11:87405647..87405731,+ | |||
|ontology_enrichment_celltype=CL:0000540!8.90e-14!33;CL:0000047!8.90e-14!33;CL:0000031!8.90e-14!33;CL:0000404!8.90e-14!33;CL:0000117!6.98e-13!23;CL:0000337!6.98e-13!23;CL:0000393!1.60e-09!39;CL:0000211!1.60e-09!39;CL:0000221!2.52e-07!44;CL:0000133!2.52e-07!44;CL:0002319!7.03e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.90e-14,33;CL:0000047,8.90e-14,33;CL:0000031,8.90e-14,33;CL:0000404,8.90e-14,33;CL:0000117,6.98e-13,23;CL:0000337,6.98e-13,23;CL:0000393,1.60e-09,39;CL:0000211,1.60e-09,39;CL:0000221,2.52e-07,44;CL:0000133,2.52e-07,44;CL:0002319,7.03e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.60e-14!73;UBERON:0005743!1.60e-14!73;UBERON:0000073!6.72e-13!75;UBERON:0001016!6.72e-13!75;UBERON:0000033!4.18e-11!63;UBERON:0001049!4.54e-11!52;UBERON:0005068!4.54e-11!52;UBERON:0006241!4.54e-11!52;UBERON:0007135!4.54e-11!52;UBERON:0000955!7.88e-11!50;UBERON:0006238!7.88e-11!50;UBERON:0002616!1.53e-10!49;UBERON:0000153!3.50e-10!94;UBERON:0000475!1.05e-09!200;UBERON:0007811!1.87e-09!86;UBERON:0002346!5.72e-09!71;UBERON:0003075!5.72e-09!71;UBERON:0007284!5.72e-09!71;UBERON:0003056!1.38e-08!49;UBERON:0004121!2.60e-08!102;UBERON:0000924!2.60e-08!102;UBERON:0006601!2.60e-08!102;UBERON:0003080!3.96e-08!40;UBERON:0002780!1.13e-07!39;UBERON:0001890!1.13e-07!39;UBERON:0006240!1.13e-07!39;UBERON:0002020!2.58e-07!34;UBERON:0004111!7.87e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.60e-14,73;UBERON:0001016,6.72e-13,75;UBERON:0000073,2.05e-12,54;UBERON:0002346,5.29e-12,64;UBERON:0003075,5.29e-12,64;UBERON:0007284,5.29e-12,64;UBERON:0001049,4.54e-11,52;UBERON:0005068,4.54e-11,52;UBERON:0006241,4.54e-11,52;UBERON:0007135,4.54e-11,52;UBERON:0004121,1.41e-10,95;UBERON:0000924,1.41e-10,95;UBERON:0006601,1.41e-10,95;UBERON:0010371,1.96e-10,73;UBERON:0000955,3.93e-09,47;UBERON:0006238,3.93e-09,47;UBERON:0002616,7.42e-09,46;UBERON:0003056,1.38e-08,49;UBERON:0003080,3.96e-08,40;UBERON:0002780,1.13e-07,39;UBERON:0001890,1.13e-07,39;UBERON:0006240,1.13e-07,39;UBERON:0002020,2.58e-07,34;UBERON:0011216,4.61e-07,194;UBERON:0004111,7.87e-07,122;UBERON:0000483,9.43e-07,174 | |||
|phase1_expression=15.534438169165,10.8182376368202,6.3699893514535,17.2404600444893,11.520601788766,11.7515490338323,8.87728034262997,11.4919757863003,1.68946466582,1.40438715793196,2.73948749160808,2.79202556483677,11.641649635322,12.5885379483356,9.66018309265422,15.1856450542369,13.9912375625629,20.5050407482854,16.4537320326887,14.004858509335,11.9060606211498,5.65958421845046,5.74639536105658,7.1996590257033,6.19405058881359,9.76194338995534,5.59990595006797,4.74036711908956,6.84084310042946,7.81293402255785,4.6563407237614,12.7006134691926,11.6862309641068,15.8481681015439,7.22129049378186,6.31691652362271,6.12508068787107,17.5783284909501,15.626706890476,19.3703785270305,18.8234076169925,17.0761371239611,13.5942898848723,5.79125362687656,5.27160042341476,4.77221555620372,8.60630478782843,8.28495594245697,4.83309602015838,5.44403717407994,10.6389680435276,7.18762821824858,21.3083909693325,10.1550699881588,10.4189077734164,6.43148590089868,8.88253663810146,10.8291139378263,16.1853168687678,17.4567023159771,22.1840991227163,9.4876468979357,9.78224275722253,6.29929802096979,4.94433181283487,6.3943210345149,3.59520132622086,6.91592949578798,14.2054768862614,14.5806413398226,15.984697062705,15.7108041422092,10.3808214247258,16.046294697159,21.1818490950302,22.9804696652505,39.6417171597799,22.7283461791634,31.6429458507862,16.353899678544,20.1272815925301,20.8365348222704,20.3803589271008,14.069065250792,16.0438160165651,22.0971439105251,16.2303716110977,18.6399445825301,1.96888102666279,2.64500460373749,13.6236309689789,18.9293252935905,0.679971333707751,13.4925797909454,9.09686984426737,9.85659151614138,6.03911006566533,2.21559419351475,2.07828803682295,2.12003744706204,18.8730182500752,2.56652954828636,2.54805239706646,28.4426681261332,1.5154372870785,2.02687892380079,1.51657333504435,8.67797485864856,15.2773351351831,8.75808620482466,8.15381035800839,7.91610243611567,5.5347719341454,7.38540938707851,6.70255630673517,7.28866229712118,7.16865406429684,7.66376591675532,18.5768215909474,8.41187619726528,7.50861162765338,5.81850303762267,9.31958806090611,19.0307518057506,15.7085030110091,8.9409969323007,4.07371423320129,5.99902730993408,4.06624726633807,17.6752954497691,14.640019290196,12.062817802835,13.7321212951898,10.4843337505436,13.9217989854905,14.7639549391659,7.02691610567182,8.45967400148633,16.4269792981889,13.4682787767343,12.4915625244196,14.2539304748753,9.18316862007281,9.34369870581433,12.5187158438443,8.96796041993949,11.9938207436453,13.1938719076898,17.8921434134259,17.775971535775,12.1406275673125,9.64461222681329,11.6779844674751,8.358051996532,7.40815691068596,12.5391588095651,4.21327912387941,6.17634977075316,3.6941254921427,8.69928244649108,10.3191466391682,9.7233513188948,8.75955521665278,8.06733350164356,7.40482141859416,9.53389173476672,8.31647544338819,6.07179780309281,6.91151369636618,5.74586124276833,9.64718833595683,8.77199924551994,6.14740322814942,9.93127498826751,14.7202963994889,12.3485534855141,8.26046957459495,8.46241813323342,10.6644125267617,17.1855137176724,6.70110798874885,8.87407508342707,10.229390016864,11.7939888189787,8.0669940462567,8.56434564564857,9.0480675168097,8.55512829776949,10.5280607044325,10.7858329038507,7.5648317456143,8.96135729644652,11.3800740571849,10.3966146474853,9.01661885384643,8.96065842519383,11.4431967428899,9.95928642442524,13.2164362589698,12.8420828742254,11.4609071324204,13.2034965396327,8.30067355844017,11.3454671886944,12.1866576970186,9.219346607779,12.5773275260872,12.7823894668781,14.5136735515409,9.78166867332756,12.1601420081277,6.04035109013779,2.87536413054709,6.32639611036456,11.8574315783533,14.1444171650383,11.1226396383586,11.0962009913574,12.1937105509959,16.1067700004912,19.066902243717,10.6939404038369,12.6732734075791,14.4055381399962,14.0445748122748,12.2934198150413,10.719189799221,8.858587585951,14.6698387164888,12.4536119183961,12.7786886580763,9.25753974921674,6.03165135757089,7.07077388964322,8.85175691434265,11.0374698521893,14.4495530989013,13.7137673312878,1.80328439914343,9.84636616097055,9.4652465824877,13.2749173060857,15.0796378412959,14.0991590792006,13.590719119026,18.9661275628518,12.9539424535966,10.5212108848072,8.69633111482352,13.8168166061377,9.9358059645788,10.5058706163681,6.02681749608232,12.8676695918578,9.2921596837974,11.1679092631291,9.37203026590728,11.3163047853539,11.8120757152309,14.1420168054207,8.01127708821486,8.36127577798263,10.3384239731569,12.6414703174326,10.5418608574999,7.21948802737308,17.0219802876894,13.1444598642856,11.1248468053169,14.7892554171799,12.5911565886014,13.7343989553594,12.3411765451591,10.3518082698964,8.68285319835728,14.6164128896036,20.0680842230015,7.91454014119104,5.16686165426898,8.44380948994182,7.87857470420701,8.20704498725306,11.659233465194,15.9465759729038,11.4483490134561,6.19160603889667,10.0005044779644,11.4904758772862,11.7557035840082,8.23601423543482,3.0596117398894,3.91864066506242,3.31679937130617,5.72802370809068,14.3932877079417,11.99584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| |||
|short_description=p1@Mtmr4 | |||
}} |
Revision as of 06:45, 4 August 2015
Short description: | p1@Mtmr4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mtmr4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000092802, ENSMUST00000103179, ENSMUST00000146871, ENSMUST00000167336, NM_133215, uc007ktz.1, uc007kua.1_5end |
EntrezGene: | 170749 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.90e-14 | 33 |
neuronal stem cell | 8.90e-14 | 33 |
neuroblast | 8.90e-14 | 33 |
electrically signaling cell | 8.90e-14 | 33 |
CNS neuron (sensu Vertebrata) | 6.98e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.98e-13 | 23 |
electrically responsive cell | 1.60e-09 | 39 |
electrically active cell | 1.60e-09 | 39 |
ectodermal cell | 2.52e-07 | 44 |
neurectodermal cell | 2.52e-07 | 44 |
neural cell | 7.03e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.60e-14 | 73 |
nervous system | 6.72e-13 | 75 |
regional part of nervous system | 2.05e-12 | 54 |
neurectoderm | 5.29e-12 | 64 |
neural plate | 5.29e-12 | 64 |
presumptive neural plate | 5.29e-12 | 64 |
neural tube | 4.54e-11 | 52 |
neural rod | 4.54e-11 | 52 |
future spinal cord | 4.54e-11 | 52 |
neural keel | 4.54e-11 | 52 |
ectoderm-derived structure | 1.41e-10 | 95 |
ectoderm | 1.41e-10 | 95 |
presumptive ectoderm | 1.41e-10 | 95 |
ecto-epithelium | 1.96e-10 | 73 |
brain | 3.93e-09 | 47 |
future brain | 3.93e-09 | 47 |
regional part of brain | 7.42e-09 | 46 |
pre-chordal neural plate | 1.38e-08 | 49 |
anterior neural tube | 3.96e-08 | 40 |
regional part of forebrain | 1.13e-07 | 39 |
forebrain | 1.13e-07 | 39 |
future forebrain | 1.13e-07 | 39 |
gray matter | 2.58e-07 | 34 |
organ system subdivision | 4.61e-07 | 194 |
anatomical conduit | 7.87e-07 | 122 |
epithelium | 9.43e-07 | 174 |