FFCP PHASE1:Mm9::chr10:78243215..78243286,+: Difference between revisions
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{{FFCP|EntrezGene=20513|HGNC=|MCL_coexpression_id=30|UniProt=O35544,B2RQX4,Q3TXM3|association_with_transcript=0bp_to_ENSMUST00000005490,NM_009200,uc007fyg.2_5end|description=CAGE_peak_1_at_Slc1a6_5end|id=chr10:78243215..78243286,+|ontology_enrichment_celltype=CL:0000055!9.65e-13!50;CL:0000393!5.17e-12!39;CL:0000211!5.17e-12!39;CL:0000221!1.05e-09!44;CL:0000133!1.05e-09!44;CL:0002319!1.16e-09!43;CL:0000117!1.57e-08!23;CL:0000337!1.57e-08!23;CL:0000540!2.88e-08!33;CL:0000047!2.88e-08!33;CL:0000031!2.88e-08!33;CL:0000404!2.88e-08!33|ontology_enrichment_celltype_v019_2=CL:0000393,3.61e-12,39;CL:0000211,3.61e-12,39;CL:0002319,7.01e-10,43;CL:0000221,1.78e-09,44;CL:0000133,1.78e-09,44;CL:0000117,2.01e-09,23;CL:0000337,2.01e-09,23;CL:0002321,3.82e-08,70;CL:0000680,5.20e-08,6;CL:0000187,5.20e-08,6;CL:0000056,5.20e-08,6;CL:0000540,2.41e-07,33;CL:0000047,2.41e-07,33;CL:0000031,2.41e-07,33;CL:0000404,2.41e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.55e-20!73;UBERON:0005743!8.55e-20!73;UBERON:0000073!1.76e-18!75;UBERON:0001016!1.76e-18!75;UBERON:0002346!1.41e-15!71;UBERON:0003075!1.41e-15!71;UBERON:0007284!1.41e-15!71;UBERON:0000033!1.88e-15!63;UBERON:0001049!7.28e-15!52;UBERON:0005068!7.28e-15!52;UBERON:0006241!7.28e-15!52;UBERON:0007135!7.28e-15!52;UBERON:0004121!7.80e-15!102;UBERON:0000924!7.80e-15!102;UBERON:0006601!7.80e-15!102;UBERON:0000955!3.72e-13!50;UBERON:0006238!3.72e-13!50;UBERON:0002616!9.83e-13!49;UBERON:0003056!4.17e-12!49;UBERON:0002020!3.86e-11!34;UBERON:0003080!5.84e-09!40;UBERON:0002780!1.53e-08!39;UBERON:0001890!1.53e-08!39;UBERON:0006240!1.53e-08!39;UBERON:0002791!3.49e-08!29;UBERON:0003528!3.49e-08!29;UBERON:0001893!3.49e-08!29;UBERON:0007811!1.22e-07!86;UBERON:0003076!1.56e-07!12;UBERON:0003057!1.56e-07!12;UBERON:0000153!9.14e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.00e-16,73;UBERON:0004121,3.17e-16,95;UBERON:0000924,3.17e-16,95;UBERON:0006601,3.17e-16,95;UBERON:0002346,9.49e-16,64;UBERON:0003075,9.49e-16,64;UBERON:0007284,9.49e-16,64;UBERON:0001016,1.93e-15,75;UBERON:0000073,1.34e-12,54;UBERON:0010371,3.01e-12,73;UBERON:0001049,2.04e-11,52;UBERON:0005068,2.04e-11,52;UBERON:0006241,2.04e-11,52;UBERON:0007135,2.04e-11,52;UBERON:0002020,8.77e-11,34;UBERON:0010314,2.41e-10,92;UBERON:0003056,1.46e-09,49;UBERON:0003076,1.11e-08,12;UBERON:0003057,1.11e-08,12;UBERON:0000955,6.17e-08,47;UBERON:0006238,6.17e-08,47;UBERON:0002616,1.80e-07,46;UBERON:0002240,4.97e-07,6;UBERON:0005174,4.97e-07,6;UBERON:0001137,4.97e-07,6;UBERON:0003528,5.30e-07,29;UBERON:0002791,5.30e-07,29;UBERON:0001893,5.30e-07,29|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74190476664707,0.198581902401771,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.2980858692864,20.9850247624395,29.0003868415457,50.8554373826225,0.218025156380447,5.05278220289285,6.80504646759992,4.89952475688769,0,0,0,0,15.6928255981928,16.9054729563866,9.7977697532714,4.24864567805155,6.34789175126439,5.70448263155561,13.5537812827653,19.5644855144451,0,1.97773272513395,0,18.2756067416227,7.30014780110954,0.103689612308478,0,0.210324961351382,11.9973413449598,13.0312439161452,0.61245399607477,0.191690942036473,0.919218786610021,4.40463523997555,2.17068474744819,1.84327839907492,1.58263545276233,1.82975287204819,1.04182674111352,7.81712397203867,5.6276261003168,2.90316670775939,11.7851434189467,11.6744778255264,8.20157561631323,0,0,0,0,0,0,0,0,0.702222100658759,1.36344258062446,1.03914401841148,1.06001872353102,0.422530259330042,3.84979432242953,0,0,0,0,0,0.5709193985953,0,0,0.173485326766136,0,0,0.150722640552623,1.52865319276416,0,0,0,0,0,0.220841518460394,0,0,77.8796920050715,113.101221679266,0,0,0,0,2.39665023047716,2.74500361691176,1.88481528169297,1.39059456153821,1.27857728665165,1.45451631191692,1.29793010454206,1.42575109390443,0,0,0,1.04096354370163,3.90833577536904,4.68161537493908,7.38453607395004,14.3557013209302,12.811372028485,10.3071897015702,1.03481348295606,0,0.189106080167819,0.703804496655795,0.657587197282725,0.278047249225598,0,0,3.78165106955137,0,0,0,0.414251545071004,0,0.540186184383045,0.473489471170421,0.393528463494808,0,0.232533944750408,0.268273401399619,0.233530684734339,0.16455984991348,0.164167464079095,0,0,0,0,1.47202963994889,1.13195073617213,0,0,1.06644125267617,1.62565670302307,0.77320476793256,0.80673409849337,0.22237804384487,0.190225626112559,0,0,0,0.397912944082302,0,0,0,0,0,0.342745537829186,0,0,0,0.280543279561274,0,0,0,0,0,0.667380422864376,0.196558995113203,0,0,0,0.50925170356284,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.162964976442026,0.169745085775188,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,1.9266070798535,0.937693492737625,0,0,1.26203287766503,0.390438744296638,0,0.238968797952552,0,0.283076530788832,0.809621403349789,2.33804686329049,1.18586333383957,1.92792789853084,0.283880170416537,1.6025904330053,2.11753047159649,0,0,0.728341908464944,0.906970670894253,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0.214337035031592,0.532020700926821,0.356737635204141,0.329098041204242,0.608929898229199,0.23467170806371,0.21183207086382,0,0,0,0,0,0,0,2.22510362412612,0,0.412773735926445,0,0,0,0,0,0,0,0,0.949007980743406,0,0.216010681643603,0,0.218362563746178,0,0.330613822901344,0,0.129614973291793,0,0,4.18646328923141,4.30192075188454,5.05573089694524,6.19967152693109,6.75824501963113,21.945803626756,20.0514752659683,12.0588246089567,0.241584120826006,0,0,0.202725215290164,0.616265742988964,0.129920822977795,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0.0897138566094757,0.167884616364078,0,0,0,0,0,3.95326289831947,0.460325236507177,1.71868654031819,1.54667864109319,2.74033007908257,2.2661816921691,2.70009000092722,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,0.399024873401031,0.512200817262403,0.729320151204882,0,0.551530525350042,1.11123363900808,0.824140228955577,1.28367683836726,1.26348605881899,2.28131369901216,1.32038438970253,0.561849044819294,0.640251524048693,0.918967503289812,0.952587382566147,0.463537303779422,0.77163688185482,1.23625770240992,1.03039244094078,0.685738504770831,1.06485483695602,1.1921809497366,1.30811774969096,0.564656282491984,1.01537529470012,0.73171189149109,0.789209134313529,0.407412341537585,0.561142271657738,1.06771516311757,1.18205378850676,1.22769312950907,0.464810523557898,0.964533054905707,2.24829520144151,0.935726433781634,0.859484216193193,0.57386499620653,0.220591419119515,0|short_description=p1@Slc1a6}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20513 | |||
|HGNC= | |||
|MCL_coexpression_id=30 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O35544,uniprot:B2RQX4,uniprot:Q3TXM3 | |||
|association_with_transcript=0bp_to_ENSMUST00000005490,NM_009200,uc007fyg.2_5end | |||
|cluster_id=chr10:78243215..78243286,+ | |||
|description=CAGE_peak_1_at_Slc1a6_5end | |||
|id=chr10:78243215..78243286,+ | |||
|ontology_enrichment_celltype=CL:0000055!9.65e-13!50;CL:0000393!5.17e-12!39;CL:0000211!5.17e-12!39;CL:0000221!1.05e-09!44;CL:0000133!1.05e-09!44;CL:0002319!1.16e-09!43;CL:0000117!1.57e-08!23;CL:0000337!1.57e-08!23;CL:0000540!2.88e-08!33;CL:0000047!2.88e-08!33;CL:0000031!2.88e-08!33;CL:0000404!2.88e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,3.61e-12,39;CL:0000211,3.61e-12,39;CL:0002319,7.01e-10,43;CL:0000221,1.78e-09,44;CL:0000133,1.78e-09,44;CL:0000117,2.01e-09,23;CL:0000337,2.01e-09,23;CL:0002321,3.82e-08,70;CL:0000680,5.20e-08,6;CL:0000187,5.20e-08,6;CL:0000056,5.20e-08,6;CL:0000540,2.41e-07,33;CL:0000047,2.41e-07,33;CL:0000031,2.41e-07,33;CL:0000404,2.41e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.55e-20!73;UBERON:0005743!8.55e-20!73;UBERON:0000073!1.76e-18!75;UBERON:0001016!1.76e-18!75;UBERON:0002346!1.41e-15!71;UBERON:0003075!1.41e-15!71;UBERON:0007284!1.41e-15!71;UBERON:0000033!1.88e-15!63;UBERON:0001049!7.28e-15!52;UBERON:0005068!7.28e-15!52;UBERON:0006241!7.28e-15!52;UBERON:0007135!7.28e-15!52;UBERON:0004121!7.80e-15!102;UBERON:0000924!7.80e-15!102;UBERON:0006601!7.80e-15!102;UBERON:0000955!3.72e-13!50;UBERON:0006238!3.72e-13!50;UBERON:0002616!9.83e-13!49;UBERON:0003056!4.17e-12!49;UBERON:0002020!3.86e-11!34;UBERON:0003080!5.84e-09!40;UBERON:0002780!1.53e-08!39;UBERON:0001890!1.53e-08!39;UBERON:0006240!1.53e-08!39;UBERON:0002791!3.49e-08!29;UBERON:0003528!3.49e-08!29;UBERON:0001893!3.49e-08!29;UBERON:0007811!1.22e-07!86;UBERON:0003076!1.56e-07!12;UBERON:0003057!1.56e-07!12;UBERON:0000153!9.14e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.00e-16,73;UBERON:0004121,3.17e-16,95;UBERON:0000924,3.17e-16,95;UBERON:0006601,3.17e-16,95;UBERON:0002346,9.49e-16,64;UBERON:0003075,9.49e-16,64;UBERON:0007284,9.49e-16,64;UBERON:0001016,1.93e-15,75;UBERON:0000073,1.34e-12,54;UBERON:0010371,3.01e-12,73;UBERON:0001049,2.04e-11,52;UBERON:0005068,2.04e-11,52;UBERON:0006241,2.04e-11,52;UBERON:0007135,2.04e-11,52;UBERON:0002020,8.77e-11,34;UBERON:0010314,2.41e-10,92;UBERON:0003056,1.46e-09,49;UBERON:0003076,1.11e-08,12;UBERON:0003057,1.11e-08,12;UBERON:0000955,6.17e-08,47;UBERON:0006238,6.17e-08,47;UBERON:0002616,1.80e-07,46;UBERON:0002240,4.97e-07,6;UBERON:0005174,4.97e-07,6;UBERON:0001137,4.97e-07,6;UBERON:0003528,5.30e-07,29;UBERON:0002791,5.30e-07,29;UBERON:0001893,5.30e-07,29 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.74190476664707,0.198581902401771,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.2980858692864,20.9850247624395,29.0003868415457,50.8554373826225,0.218025156380447,5.05278220289285,6.80504646759992,4.89952475688769,0,0,0,0,15.6928255981928,16.9054729563866,9.7977697532714,4.24864567805155,6.34789175126439,5.70448263155561,13.5537812827653,19.5644855144451,0,1.97773272513395,0,18.2756067416227,7.30014780110954,0.103689612308478,0,0.210324961351382,11.9973413449598,13.0312439161452,0.61245399607477,0.191690942036473,0.919218786610021,4.40463523997555,2.17068474744819,1.84327839907492,1.58263545276233,1.82975287204819,1.04182674111352,7.81712397203867,5.6276261003168,2.90316670775939,11.7851434189467,11.6744778255264,8.20157561631323,0,0,0,0,0,0,0,0,0.702222100658759,1.36344258062446,1.03914401841148,1.06001872353102,0.422530259330042,3.84979432242953,0,0,0,0,0,0.5709193985953,0,0,0.173485326766136,0,0,0.150722640552623,1.52865319276416,0,0,0,0,0,0.220841518460394,0,0,77.8796920050715,113.101221679266,0,0,0,0,2.39665023047716,2.74500361691176,1.88481528169297,1.39059456153821,1.27857728665165,1.45451631191692,1.29793010454206,1.42575109390443,0,0,0,1.04096354370163,3.90833577536904,4.68161537493908,7.38453607395004,14.3557013209302,12.811372028485,10.3071897015702,1.03481348295606,0,0.189106080167819,0.703804496655795,0.657587197282725,0.278047249225598,0,0,3.78165106955137,0,0,0,0.414251545071004,0,0.540186184383045,0.473489471170421,0.393528463494808,0,0.232533944750408,0.268273401399619,0.233530684734339,0.16455984991348,0.164167464079095,0,0,0,0,1.47202963994889,1.13195073617213,0,0,1.06644125267617,1.62565670302307,0.77320476793256,0.80673409849337,0.22237804384487,0.190225626112559,0,0,0,0.397912944082302,0,0,0,0,0,0.342745537829186,0,0,0,0.280543279561274,0,0,0,0,0,0.667380422864376,0.196558995113203,0,0,0,0.50925170356284,0,0,0,0,0,0,0,0,0,0,0.757965647081939,0.162964976442026,0.169745085775188,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,1.9266070798535,0.937693492737625,0,0,1.26203287766503,0.390438744296638,0,0.238968797952552,0,0.283076530788832,0.809621403349789,2.33804686329049,1.18586333383957,1.92792789853084,0.283880170416537,1.6025904330053,2.11753047159649,0,0,0.728341908464944,0.906970670894253,0.188605079755898,0.295301892880773,0,0,0,0,0,0,0,0.340439605753788,0.18006109403131,0.129358683782755,0.214337035031592,0.532020700926821,0.356737635204141,0.329098041204242,0.608929898229199,0.23467170806371,0.21183207086382,0,0,0,0,0,0,0,2.22510362412612,0,0.412773735926445,0,0,0,0,0,0,0,0,0.949007980743406,0,0.216010681643603,0,0.218362563746178,0,0.330613822901344,0,0.129614973291793,0,0,4.18646328923141,4.30192075188454,5.05573089694524,6.19967152693109,6.75824501963113,21.945803626756,20.0514752659683,12.0588246089567,0.241584120826006,0,0,0.202725215290164,0.616265742988964,0.129920822977795,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0.0897138566094757,0.167884616364078,0,0,0,0,0,3.95326289831947,0.460325236507177,1.71868654031819,1.54667864109319,2.74033007908257,2.2661816921691,2.70009000092722,0.45032120322422,0.453142408984205,0.51776031175182,0.103787347584177,0.399024873401031,0.512200817262403,0.729320151204882,0,0.551530525350042,1.11123363900808,0.824140228955577,1.28367683836726,1.26348605881899,2.28131369901216,1.32038438970253,0.561849044819294,0.640251524048693,0.918967503289812,0.952587382566147,0.463537303779422,0.77163688185482,1.23625770240992,1.03039244094078,0.685738504770831,1.06485483695602,1.1921809497366,1.30811774969096,0.564656282491984,1.01537529470012,0.73171189149109,0.789209134313529,0.407412341537585,0.561142271657738,1.06771516311757,1.18205378850676,1.22769312950907,0.464810523557898,0.964533054905707,2.24829520144151,0.935726433781634,0.859484216193193,0.57386499620653,0.220591419119515,0 | |||
|short_description=p1@Slc1a6 | |||
}} |
Revision as of 18:28, 4 August 2015
Short description: | p1@Slc1a6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc1a6_5end |
Coexpression cluster: | MCL_coexpression_mm9:30 |
Association with transcript: | 0bp_to_ENSMUST00000005490, NM_009200, uc007fyg.2_5end |
EntrezGene: | 20513 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 3.61e-12 | 39 |
electrically active cell | 3.61e-12 | 39 |
neural cell | 7.01e-10 | 43 |
ectodermal cell | 1.78e-09 | 44 |
neurectodermal cell | 1.78e-09 | 44 |
CNS neuron (sensu Vertebrata) | 2.01e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.01e-09 | 23 |
embryonic cell | 3.82e-08 | 70 |
muscle precursor cell | 5.20e-08 | 6 |
muscle cell | 5.20e-08 | 6 |
myoblast | 5.20e-08 | 6 |
neuron | 2.41e-07 | 33 |
neuronal stem cell | 2.41e-07 | 33 |
neuroblast | 2.41e-07 | 33 |
electrically signaling cell | 2.41e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.00e-16 | 73 |
ectoderm-derived structure | 3.17e-16 | 95 |
ectoderm | 3.17e-16 | 95 |
presumptive ectoderm | 3.17e-16 | 95 |
neurectoderm | 9.49e-16 | 64 |
neural plate | 9.49e-16 | 64 |
presumptive neural plate | 9.49e-16 | 64 |
nervous system | 1.93e-15 | 75 |
regional part of nervous system | 1.34e-12 | 54 |
ecto-epithelium | 3.01e-12 | 73 |
neural tube | 2.04e-11 | 52 |
neural rod | 2.04e-11 | 52 |
future spinal cord | 2.04e-11 | 52 |
neural keel | 2.04e-11 | 52 |
gray matter | 8.77e-11 | 34 |
structure with developmental contribution from neural crest | 2.41e-10 | 92 |
pre-chordal neural plate | 1.46e-09 | 49 |
posterior neural tube | 1.11e-08 | 12 |
chordal neural plate | 1.11e-08 | 12 |
brain | 6.17e-08 | 47 |
future brain | 6.17e-08 | 47 |
regional part of brain | 1.80e-07 | 46 |
spinal cord | 4.97e-07 | 6 |
dorsal region element | 4.97e-07 | 6 |
dorsum | 4.97e-07 | 6 |
brain grey matter | 5.30e-07 | 29 |
regional part of telencephalon | 5.30e-07 | 29 |
telencephalon | 5.30e-07 | 29 |