FFCP PHASE1:Mm9::chr2:3250430..3250435,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=105|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:3250430..3250435,+|id=chr2:3250430..3250435,+|ontology_enrichment_celltype=CL:0000063!1.99e-16!66;CL:0002563!1.21e-14!9;CL:0002251!1.21e-14!9;CL:0000791!3.23e-13!9;CL:0000789!3.23e-13!9;CL:0002420!3.23e-13!9;CL:0002419!3.23e-13!9;CL:0000790!3.23e-13!9;CL:0000084!3.30e-13!11;CL:0000827!3.30e-13!11;CL:0000838!5.96e-12!12;CL:0000066!6.56e-12!25;CL:0000624!1.22e-11!8;CL:0000893!1.65e-11!6;CL:0002489!1.65e-11!6;CL:0000898!1.65e-11!6;CL:0000809!1.65e-11!6;CL:0000810!1.65e-11!6;CL:0000895!1.65e-11!6;CL:0000808!1.65e-11!6;CL:0000894!1.65e-11!6;CL:0000806!1.65e-11!6;CL:0000807!1.65e-11!6;CL:0000805!1.65e-11!6;CL:0002425!1.65e-11!6;CL:0002436!1.65e-11!6;CL:0002427!1.65e-11!6;CL:0002428!1.65e-11!6;CL:0002429!1.65e-11!6;CL:0002433!1.65e-11!6;CL:0002431!1.65e-11!6;CL:0002432!1.65e-11!6;CL:0000542!6.88e-11!13;CL:0000051!6.88e-11!13;CL:0000144!1.28e-10!121;CL:0000012!1.28e-10!121;CL:0000075!1.84e-10!7;CL:0000239!8.84e-09!6;CL:0000677!8.84e-09!6;CL:0000212!8.84e-09!6;CL:0000584!8.84e-09!6;CL:0002371!1.89e-08!118;CL:0002076!4.07e-08!15;CL:0000738!6.74e-08!17;CL:0002087!6.74e-08!17;CL:0002250!1.20e-07!3;CL:0000988!1.37e-07!32;CL:0002032!1.37e-07!32;CL:0000037!1.37e-07!32;CL:0000566!1.37e-07!32;CL:0000837!1.37e-07!32;CL:0000223!2.63e-07!20;CL:0000548!3.28e-07!115;CL:0000004!3.28e-07!115;CL:0000255!3.28e-07!115;CL:0000473!4.09e-07!3;CL:0000627!4.09e-07!3;CL:0000682!4.09e-07!3|ontology_enrichment_celltype_v019_2=CL:0002250,4.47e-25,3;CL:0002563,1.38e-22,9;CL:0002251,1.38e-22,9;CL:0000066,4.03e-20,25;CL:0000223,1.77e-14,20;CL:0002076,1.32e-13,15;CL:0000682,1.97e-11,3;CL:0000213,1.73e-09,1;CL:0002078,1.73e-09,1;CL:0000115,1.73e-09,1;CL:0002262,1.73e-09,1;CL:1000398,1.73e-09,1;CL:0000815,2.52e-09,1;CL:0000792,2.52e-09,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000485!1.09e-14!11;UBERON:0003350!1.21e-14!9;UBERON:0004808!1.21e-14!9;UBERON:0001277!1.21e-14!9;UBERON:0001242!1.28e-09!13;UBERON:0000060!1.28e-09!13;UBERON:0001262!1.28e-09!13;UBERON:0004786!1.28e-09!13;UBERON:0000344!4.07e-08!15|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.38e-22,9;UBERON:0004808,1.38e-22,9;UBERON:0001277,1.38e-22,9;UBERON:0000485,1.64e-18,11;UBERON:0001242,1.10e-15,13;UBERON:0001262,1.10e-15,13;UBERON:0004786,1.10e-15,13;UBERON:0000344,1.32e-13,15;UBERON:0002394,1.73e-09,1;UBERON:0001281,1.73e-09,1;UBERON:0000353,1.73e-09,1;UBERON:0003497,1.73e-09,1;UBERON:0003909,1.73e-09,1;UBERON:0003928,1.73e-09,1;UBERON:0003835,1.73e-09,1;UBERON:0003513,1.73e-09,1;UBERON:0001280,1.73e-09,1;UBERON:0004647,1.73e-09,1;UBERON:0002294,1.73e-09,1;UBERON:0001173,1.73e-09,1;UBERON:0004912,1.73e-09,1;UBERON:0005171,1.73e-09,1;UBERON:0004923,1.62e-08,24;UBERON:0003929,7.67e-07,55|phase1_expression=0,0,0.454999239389536,1.51232105653415,3.00537437967808,0.33575854382378,0.934450562382103,1.67860320474049,0.703943610758334,0.468129052643987,0.171217968225505,0.159544317990673,1.54080656938085,0.874204024189974,0,0,0,0.157731082679119,0,0,0,0.198581902401771,0,0,0,1.72269589234506,1.29228598847722,0.430942465371778,0,0,0,0,0,0,7.51014211353314,1.49611180822643,7.75843553797003,0.418531630736908,0.7813353445238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6087803983151,0,0,0,0,0,0,0,0,0.35333957451034,0.563373679106722,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718890747035522,0,0.381210681219194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40442637462647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0.193952487167626,0,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0.169978429993855,0.839708713941948,0.276399947608848,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165458490457098,0,0.258319646955462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0,0,0,0.167884616364078,0,0,0,0,0,0,0,0,0,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr2:3250430..3250435,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=105 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:3250430..3250435,+ | |||
|description=CAGE_peak_at_chr2:3250430..3250435,+ | |||
|id=chr2:3250430..3250435,+ | |||
|ontology_enrichment_celltype=CL:0000063!1.99e-16!66;CL:0002563!1.21e-14!9;CL:0002251!1.21e-14!9;CL:0000791!3.23e-13!9;CL:0000789!3.23e-13!9;CL:0002420!3.23e-13!9;CL:0002419!3.23e-13!9;CL:0000790!3.23e-13!9;CL:0000084!3.30e-13!11;CL:0000827!3.30e-13!11;CL:0000838!5.96e-12!12;CL:0000066!6.56e-12!25;CL:0000624!1.22e-11!8;CL:0000893!1.65e-11!6;CL:0002489!1.65e-11!6;CL:0000898!1.65e-11!6;CL:0000809!1.65e-11!6;CL:0000810!1.65e-11!6;CL:0000895!1.65e-11!6;CL:0000808!1.65e-11!6;CL:0000894!1.65e-11!6;CL:0000806!1.65e-11!6;CL:0000807!1.65e-11!6;CL:0000805!1.65e-11!6;CL:0002425!1.65e-11!6;CL:0002436!1.65e-11!6;CL:0002427!1.65e-11!6;CL:0002428!1.65e-11!6;CL:0002429!1.65e-11!6;CL:0002433!1.65e-11!6;CL:0002431!1.65e-11!6;CL:0002432!1.65e-11!6;CL:0000542!6.88e-11!13;CL:0000051!6.88e-11!13;CL:0000144!1.28e-10!121;CL:0000012!1.28e-10!121;CL:0000075!1.84e-10!7;CL:0000239!8.84e-09!6;CL:0000677!8.84e-09!6;CL:0000212!8.84e-09!6;CL:0000584!8.84e-09!6;CL:0002371!1.89e-08!118;CL:0002076!4.07e-08!15;CL:0000738!6.74e-08!17;CL:0002087!6.74e-08!17;CL:0002250!1.20e-07!3;CL:0000988!1.37e-07!32;CL:0002032!1.37e-07!32;CL:0000037!1.37e-07!32;CL:0000566!1.37e-07!32;CL:0000837!1.37e-07!32;CL:0000223!2.63e-07!20;CL:0000548!3.28e-07!115;CL:0000004!3.28e-07!115;CL:0000255!3.28e-07!115;CL:0000473!4.09e-07!3;CL:0000627!4.09e-07!3;CL:0000682!4.09e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002250,4.47e-25,3;CL:0002563,1.38e-22,9;CL:0002251,1.38e-22,9;CL:0000066,4.03e-20,25;CL:0000223,1.77e-14,20;CL:0002076,1.32e-13,15;CL:0000682,1.97e-11,3;CL:0000213,1.73e-09,1;CL:0002078,1.73e-09,1;CL:0000115,1.73e-09,1;CL:0002262,1.73e-09,1;CL:1000398,1.73e-09,1;CL:0000815,2.52e-09,1;CL:0000792,2.52e-09,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000485!1.09e-14!11;UBERON:0003350!1.21e-14!9;UBERON:0004808!1.21e-14!9;UBERON:0001277!1.21e-14!9;UBERON:0001242!1.28e-09!13;UBERON:0000060!1.28e-09!13;UBERON:0001262!1.28e-09!13;UBERON:0004786!1.28e-09!13;UBERON:0000344!4.07e-08!15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.38e-22,9;UBERON:0004808,1.38e-22,9;UBERON:0001277,1.38e-22,9;UBERON:0000485,1.64e-18,11;UBERON:0001242,1.10e-15,13;UBERON:0001262,1.10e-15,13;UBERON:0004786,1.10e-15,13;UBERON:0000344,1.32e-13,15;UBERON:0002394,1.73e-09,1;UBERON:0001281,1.73e-09,1;UBERON:0000353,1.73e-09,1;UBERON:0003497,1.73e-09,1;UBERON:0003909,1.73e-09,1;UBERON:0003928,1.73e-09,1;UBERON:0003835,1.73e-09,1;UBERON:0003513,1.73e-09,1;UBERON:0001280,1.73e-09,1;UBERON:0004647,1.73e-09,1;UBERON:0002294,1.73e-09,1;UBERON:0001173,1.73e-09,1;UBERON:0004912,1.73e-09,1;UBERON:0005171,1.73e-09,1;UBERON:0004923,1.62e-08,24;UBERON:0003929,7.67e-07,55 | |||
|phase1_expression=0,0,0.454999239389536,1.51232105653415,3.00537437967808,0.33575854382378,0.934450562382103,1.67860320474049,0.703943610758334,0.468129052643987,0.171217968225505,0.159544317990673,1.54080656938085,0.874204024189974,0,0,0,0.157731082679119,0,0,0,0.198581902401771,0,0,0,1.72269589234506,1.29228598847722,0.430942465371778,0,0,0,0,0,0,7.51014211353314,1.49611180822643,7.75843553797003,0.418531630736908,0.7813353445238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6087803983151,0,0,0,0,0,0,0,0,0.35333957451034,0.563373679106722,0,0,0,0,0,0,0,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718890747035522,0,0.381210681219194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40442637462647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0.193952487167626,0,0,0,0.156998727841375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0.169978429993855,0.839708713941948,0.276399947608848,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165458490457098,0,0.258319646955462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0,0,0,0.167884616364078,0,0,0,0,0,0,0,0,0,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:3250430..3250435,+ | |||
}} |
Latest revision as of 01:40, 5 August 2015
Short description: | p@chr2:3250430..3250435, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:3250430..3250435, + |
Coexpression cluster: | MCL_coexpression_mm9:105 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal crypt stem cell | 4.47e-25 | 3 |
intestinal epithelial cell | 1.38e-22 | 9 |
epithelial cell of alimentary canal | 1.38e-22 | 9 |
epithelial cell | 4.03e-20 | 25 |
endodermal cell | 1.77e-14 | 20 |
endo-epithelial cell | 1.32e-13 | 15 |
M cell of gut | 1.97e-11 | 3 |
lining cell | 1.73e-09 | 1 |
meso-epithelial cell | 1.73e-09 | 1 |
endothelial cell | 1.73e-09 | 1 |
endothelial cell of sinusoid | 1.73e-09 | 1 |
endothelial cell of hepatic sinusoid | 1.73e-09 | 1 |
regulatory T cell | 2.52e-09 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.52e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 1.38e-22 | 9 |
gastrointestinal system epithelium | 1.38e-22 | 9 |
intestinal epithelium | 1.38e-22 | 9 |
simple columnar epithelium | 1.64e-18 | 11 |
intestinal mucosa | 1.10e-15 | 13 |
wall of intestine | 1.10e-15 | 13 |
gastrointestinal system mucosa | 1.10e-15 | 13 |
mucosa | 1.32e-13 | 15 |
bile duct | 1.73e-09 | 1 |
hepatic sinusoid | 1.73e-09 | 1 |
parenchyma | 1.73e-09 | 1 |
abdomen blood vessel | 1.73e-09 | 1 |
sinusoid | 1.73e-09 | 1 |
digestive system duct | 1.73e-09 | 1 |
abdominal segment blood vessel | 1.73e-09 | 1 |
trunk blood vessel | 1.73e-09 | 1 |
liver parenchyma | 1.73e-09 | 1 |
liver lobule | 1.73e-09 | 1 |
biliary system | 1.73e-09 | 1 |
biliary tree | 1.73e-09 | 1 |
biliary bud | 1.73e-09 | 1 |
hepatic duct | 1.73e-09 | 1 |
organ component layer | 1.62e-08 | 24 |
gut epithelium | 7.67e-07 | 55 |