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MCL coexpression mm9:118

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:12533338..12533388,-p1@Utrn
Mm9::chr10:12533399..12533410,-p7@Utrn
Mm9::chr11:100721761..100721851,+p1@Stat5a
Mm9::chr11:103032277..103032292,+p5@Fmnl1
Mm9::chr11:11585627..11585658,-p1@ENSMUST00000145789
Mm9::chr11:11590081..11590082,+p16@Ikzf1
Mm9::chr11:11590085..11590106,+p7@Ikzf1
Mm9::chr11:11590117..11590138,+p4@Ikzf1
Mm9::chr11:11590140..11590187,+p3@Ikzf1
Mm9::chr11:11590188..11590200,+p8@Ikzf1
Mm9::chr11:11590205..11590216,+p9@Ikzf1
Mm9::chr11:46202956..46202969,-p2@Itk
Mm9::chr11:46202973..46203007,-p1@Itk
Mm9::chr11:5344782..5344826,-p1@Znrf3
Mm9::chr11:97857177..97857249,-p1@Arl5c
Mm9::chr11:99016332..99016351,-p2@Ccr7
Mm9::chr12:74685775..74685797,+p1@Prkch
Mm9::chr12:77470718..77470752,-p4@Zbtb25
Mm9::chr13:24508844..24508851,+p12@Cmah
Mm9::chr14:53965564..53965568,+p1@uc007trv.1
p1@uc007trw.1
Mm9::chr14:54048383..54048396,+p1@ENSMUST00000103638
Mm9::chr14:54062918..54062937,+p1@ENSMUST00000103639
Mm9::chr14:54157921..54157933,+p1@ENSMUST00000103650
Mm9::chr14:54164650..54164665,+p1@ENSMUST00000103651
p1@uc007tsn.1
p1@uc011zkx.1
Mm9::chr14:54426172..54426195,+p1@ENSMUST00000103672
p1@uc007tto.1
Mm9::chr14:54464938..54464951,+p2@ENSMUST00000103674
p2@uc007ttp.1
Mm9::chr14:54464982..54464996,+p1@ENSMUST00000103674
p1@uc007ttp.1
Mm9::chr14:54811976..54811990,+p1@ENSMUST00000103714
Mm9::chr14:54840241..54840260,+p@chr14:54840241..54840260
+
Mm9::chr14:54840371..54840385,+p@chr14:54840371..54840385
+
Mm9::chr15:100430393..100430410,-p3@Pou6f1
Mm9::chr15:100430414..100430470,-p1@Pou6f1
Mm9::chr15:80403104..80403111,+p10@Grap2
Mm9::chr15:97661968..97662011,-p3@Hdac7
Mm9::chr16:23175423..23175450,+p2@ENSMUST00000149488
Mm9::chr16:52031698..52031759,+p1@Cblb
Mm9::chr17:47645236..47645255,+p@chr17:47645236..47645255
+
Mm9::chr17:51953616..51953628,-p@chr17:51953616..51953628
-
Mm9::chr17:51966047..51966066,+p@chr17:51966047..51966066
+
Mm9::chr17:51971209..51971220,-p43@Satb1
Mm9::chr17:51971932..51971958,-p2@Satb1
Mm9::chr19:10813429..10813446,-p2@Cd5
Mm9::chr19:10869146..10869168,-p@chr19:10869146..10869168
-
Mm9::chr19:10904411..10904532,-p1@Cd6
Mm9::chr19:10904535..10904553,-p2@Cd6
Mm9::chr19:8831629..8831645,+p1@Nxf1
Mm9::chr1:135027985..135028014,+p3@Ppp1r15b
Mm9::chr1:140041614..140041617,-p@chr1:140041614..140041617
-
Mm9::chr1:167718815..167718859,+p2@Cd247
Mm9::chr1:55420578..55420600,-p2@Boll
Mm9::chr1:60803211..60803271,+p1@Cd28
p1@LOC100048845
Mm9::chr1:60803273..60803321,+p2@Cd28
p2@LOC100048845
Mm9::chr1:60803329..60803340,+p3@Cd28
p3@LOC100048845
Mm9::chr1:64574357..64574362,-p@chr1:64574357..64574362
-
Mm9::chr2:132517620..132517639,+p@chr2:132517620..132517639
+
Mm9::chr2:160557512..160557532,+p3@Plcg1
Mm9::chr2:22630785..22630799,-p@chr2:22630785..22630799
-
Mm9::chr2:73288647..73288669,+p@chr2:73288647..73288669
+
Mm9::chr2:73290723..73290769,-p10@Wipf1
Mm9::chr3:101091820..101091880,-p1@Cd2
Mm9::chr3:106839074..106839099,+p1@Kcna3
Mm9::chr3:130814473..130814487,+p@chr3:130814473..130814487
+
Mm9::chr3:60305179..60305197,+p1@Mbnl1
Mm9::chr4:129250843..129250873,-p2@Lck
Mm9::chr4:129251001..129251012,+p@chr4:129251001..129251012
+
Mm9::chr4:129252589..129252596,-p@chr4:129252589..129252596
-
Mm9::chr4:129419424..129419433,-p4@Khdrbs1
Mm9::chr4:151498695..151498722,+p@chr4:151498695..151498722
+
Mm9::chr4:62295400..62295422,+p9@Rgs3
Mm9::chr4:6917606..6917681,-p1@Tox
Mm9::chr5:123439299..123439324,+p3@ENSMUST00000148466
p3@uc008zmw.1
Mm9::chr5:130363286..130363299,-p3@Chchd2
p3@Gm12350
p3@Gm13202
p3@LOC100045688
Mm9::chr6:125181157..125181191,-p@chr6:125181157..125181191
-
Mm9::chr6:125186941..125186952,-p4@Cd27
Mm9::chr6:40841402..40841426,+p4@1810009J06Rik
Mm9::chr6:40841430..40841450,+p3@1810009J06Rik
Mm9::chr6:41007727..41007736,+p@chr6:41007727..41007736
+
Mm9::chr6:41128837..41128859,+p2@Gm5409
Mm9::chr6:41221420..41221423,+p1@uc012ekt.1
Mm9::chr6:41491801..41491815,-p@chr6:41491801..41491815
-
Mm9::chr6:41494355..41494368,-p@chr6:41494355..41494368
-
Mm9::chr6:41494376..41494389,-p@chr6:41494376..41494389
-
Mm9::chr6:41494819..41494832,+p@chr6:41494819..41494832
+
Mm9::chr6:41504409..41504422,-p@chr6:41504409..41504422
-
Mm9::chr6:41504514..41504522,+p@chr6:41504514..41504522
+
Mm9::chr6:48626407..48626421,+p@chr6:48626407..48626421
+
Mm9::chr6:48688916..48688931,-p@chr6:48688916..48688931
-
Mm9::chr6:48691327..48691343,-p@chr6:48691327..48691343
-
Mm9::chr6:48691433..48691448,-p@chr6:48691433..48691448
-
Mm9::chr6:48691461..48691472,-p@chr6:48691461..48691472
-
Mm9::chr7:132746934..132746951,+p2@Il21r
Mm9::chr7:133513014..133513040,-p2@Lat
Mm9::chr7:133513065..133513092,-p1@Lat
Mm9::chr7:133848402..133848420,-p9@Coro1a
Mm9::chr7:29160541..29160603,-p@chr7:29160541..29160603
-
Mm9::chr8:126545419..126545430,+p4@Urb2
Mm9::chrX:156146587..156146592,+p26@Sh3kbp1
Mm9::chrX:34519665..34519666,-p@chrX:34519665..34519666
-
Mm9::chrX:74756216..74756236,+p5@Tbl1x
Mm9::chrX:74756248..74756265,+p3@Tbl1x


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs