UBERON:0002113
From FANTOM5_SSTAR
Name: | kidney | |
---|---|---|
Definition: | "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney] | |
Xrefs: |
| |
Synonyms: | "kidney" EXACT [] | |
Alt_id: |
UBERON:FMA_7204-MA_0001683 UBERON:FMA_7205-MA_0001655 | |
Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000489(cavitated compound organ),UBERON:0004120(mesoderm-derived structure),UBERON:0005172(abdomen element),UBERON:0006554(urinary system structure) |
---|---|
develops_from: | UBERON:0003918(kidney mesenchyme),UBERON:0005095(kidney rudiment) |
part_of: | UBERON:0000916(abdomen),UBERON:0001008(renal system) |
Children
is a: | UBERON:0000080 (mesonephros),UBERON:0002120 (pronephros) |
---|---|
derives from: | FF:0010017 (human kidney - adult sample),FF:0010045 (human kidney - fetal sample),FF:0011341 (mouse kidney- embryo E14 sample),FF:0011350 (mouse kidney- embryo E15 sample),FF:0011363 (mouse kidney- embryo E16 sample),FF:0011371 (mouse kidney- embryo E17 sample),FF:0011396 (mouse kidney- neonate N00 sample),FF:0011419 (mouse kidney- neonate N10 sample),FF:0011432 (mouse kidney- neonate N20 sample),FF:0011482 (mouse kidney- neonate N25 sample),FF:0011483 (mouse kidney- neonate N30 sample),FF:0011512 (mouse kidney- embryo E18 sample),FF:0100067 (kidney cell line sample),FF:0102733 (embryonic kidney cell line sample) |
part of: | UBERON:0001225 (cortex of kidney),CL:0002518 (kidney epithelial cell),UBERON:0004819 (kidney epithelium),UBERON:0005215 (kidney interstitium),UBERON:0006553 (renal duct),UBERON:0007684 (uriniferous tubule),UBERON:0008987 (renal parenchyma),UBERON:0009201 (nephric duct),UBERON:0010532 (primitive nephron),CL:1000497 (kidney cell),CL:1001318 (renal interstitial pericyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10450-106F9 (embryonic kidney cell line: HEK293/SLAM untreated)
- 10451-106G1 (embryonic kidney cell line: HEK293/SLAM infection, 24hr)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
... further results Mouse (Mus musculus)
- 10017-101C8 (kidney, adult, pool1)
- 10045-101F9 (kidney, fetal, pool1)
- 10088-102B7
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10450-106F9 (embryonic kidney cell line: HEK293/SLAM untreated)
- 10451-106G1 (embryonic kidney cell line: HEK293/SLAM infection, 24hr)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002113 (kidney), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data